Rorug04G0182600

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000325
Physical Location & Seq
Forward (+)
31934729 .. 31941550
6822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0182600.1

Sequence Viewer

Length: 3957 bp
ATGTACTTCGACGATTCTCAGTCGCACAACCTCCAACACTACAACGGACCAGAACCAGAAGAAGATGAAGACTCCGGTGACAATTACGCTTCGAATTCAACATCGCCGCCGCCGACTTGCTCCCAGGGCCACCGCTCCACTCTCGTCCTCCAAACCAAGCAAGGCGGCTCCATCTGCCTCCTCTGCTTCTCCAATCTCATCTCAAACCCTCAATCTCCCACCGTCCACGTGTCCTACGCTCTCTCCCAGCTCTCCCAGGCCCTCTCCGACCCTCCCTTCCTCCGCTCCCTCCTCACCTTCCACTCTCACCTCCTCGTCTCCCCGCTCGTCCAAACCCTAGCCTCCTTCGACGACGACCCCATCGCGCGACAAGTCGTGGATCTCGTCACAGGTCTTTGCGATTCCGGCGATCCCTCCCTCGCTGCTGAGTTCATTGCTCGGCTTTCCGATCGCCTCTCTTCCGGCGCCTTGGCTTGGAGTCGCCGTCAGGTTTACACGCTTCACTGCTTAGGAGTTCTCTTAAACTGTCAGCAGAGTAATCCTTTTGCTCACATTAGAGACAAAAATGGCCTCATTACAAATCTTGTTTCAGGTCTTCAATTACCAAGTGAAGAGATTCGGGGAGAAATCCTGTTTGTTCTGTACAAAGTATCTGCTCTCCACTATGCATCAGAGGATGCTGATGGATCTGATCTTTTATTTTCCTTTTGCCCCAAGTTAGTGCGCCTGTCTCTGGAGGCCCTCATGAAGACCCAAAGTGATGACGTCCGCTTGAATTGTATAGCTCTTTTGACGGTCTTGACTCGGAGAGGGCTTTTTGGGACTGCATATGCCCTTGATTTAAACAGCATGAGTTCATCTGAAGGAGATAGCTTTGGGCAAGCAACAGAAGATGGAAAAGATATGCATCCTCTGAACATATTATTTACTGAGGCCATCAAAGGCCCACTTCTTTCAACAGACAGCCAAGTCCAGATCAGCACACTAGATTTACTCTTTCACTATATGTCCTGTGAAGGCACTTCATCCAGAGAAATCCAAGTACTAGTTGAAGAAAGCATTGCAGATTATGTGTTTGAAATACTGAGATTGTCAGAATGCAAGGATCCGGCTGTCAAATCTTGCCTTCAGGTACTTGATATTTTATCAAAAGCTAAGCAAGCTTTCAAACAGAGGCTTGTTGTTGGGTTTGCAATTCTGGTTCCAGTACTACATTATGTAGCTGAAGTTCCTCTCCATCCGGTTCAAAATCAAACTCTGAAGCTTATTTTGAACTGCATTTCTGATTGCCCCGGAATGCTATCCTCCTCTCATATAGAGGAACTAGTTCCTGTTTTAACAAAGATGCTTAAACAACATACTGATGGGGATATGGGCATGCTTGAGGAGACATTTATAATGACCTGTTCAGTCCTTGTAGCTATCATAAGAACTCCATCTTTTCATGTGAGTTTGAATCTAGCACCATCAATTAAAGAAGCATTAGAATATGCTGTCTTAGCTTGTCTAAGTACATCCAACAAACATCCCGGTCAACTTCTGCATTCCTTGTACCTACTTAAAGAGGCATACATGTATAGTCGTGAAGAAAATTCTGCTGACTCCTCTAAAATAGAACTACGAAATTTGATTTTGAGTTTGTGTACAAAACATTTGTTGCCTTGGCTGGTAACCACCTTAAATGAAATGGAAGAGGAAACTATCCTTGGAGTACTGGAAACTTTTCATTCGATACTGCTTCAGGATTCTGATAACCAAGCCAGAGAATTTGCAATGACGCTACTTTCGAGCACTTGGTTCACGTTGTCATTTGGATGTCTGGGCTTATTCCCTGCTGAGAAAATGAAGTGGAGGGTGTATCTGATGCTCAGTTCACTGGTGGATGTGCTTTTGGGAACTGATACTGGGCAACCCATTAGGGATGCTACTACATATCTGCCATCTGATCCCATTGATTTGCTCTTTCTACTTGGTCAAAGGAACACCCATAATTTGGAATTATCTTCTTGTCAATCTGCCATTTTGCTGATCTTATACATCAGTTCTTTACATGATGAAAGACTTGCAGATGATAAGATGGTTTTAGCCTCTCTGGAGCAATATATTTTGGTCAACAGTAGTGATCTCCAAAATGGAGCCACTGATTCGTTCACAGTGATGATGCTGTTGTTTCTTTACGGCCTTTATAGGGGTCTTGCCGAGGTTAGCTACCAAATCCCCTATAGTCCAGAAGCTGAAAGAATCCTGTTTCAGATAGTAACTGAAAATGAATGGGATTTGTCTTCTGCAAGAATTCATCCAATATCATTGAAATGGTTCTTTCAACAAGAGAAATTGAGAAACTCATTATCTTATCAGCTTCTGAAATTTTGCAGAAGGAATACATCAAATGGCTCTGAAATCACTGCCCATGGAAAGAATAGTCATATATTAAATGTTAATGCAATTGCAGAGTTAATAGTAGAAGAACATAGTTATGGCGCCACAATTTTGGTGTGCTTATTGACAGAGCTTGTTCAAACAGAAGGTCAAGAGCAAGAGATAATTTCTGTAGTCAATCTCATGGCAACAATTGTCGACATATATCCAACCATTTCAGACCAGTTATGCTTTCTTGGTTTTGGAAATGCAGCTCGTACTCTTTATTGTGAGTCCTCCTATACACAGTCCCCACATATATCCGCAGTTGTGTTGGTTCTTATTTTTAAAATTCTATGCTCGGTGCAACATGATACTCTTTCTGATGATGAAAGTTGGCTTGCAGTGATTGTGAAGTTGATAAACAGTATCACCACAAAAGCTGCAGACATGTGGAATCATGAATGTCTCTTGGTGATTGGCATACTTTGCTTGATTTTGCACCATTCTGCTAATGCAGTGCTCACAGAAGCTTCAAAAACCATCATTTTCAGTAGTTCTCTAGTCTCTATAATCAACAGTGCAGTTCATGCAGCATGTCTTAAGGGGCCAGCATTGGTTGACCATGATGAAGGAACAAGCTCTGGAGAAATTTTGATATTTGTGCTTCTTCTAAATTACTTCACTTTAAGAAGTTTGCACATTGTTGTACCAGGGATTATGGACTGGAAAGTTTTCTTAGATCCCTCAGGTAGGATGCAGTCATTTTCCTTTATTGGCATCTACTGCCATGACCTGTGCAGGCTAATGCATTTTGGATCTCCTGTGGTCAAGCTTGCTGCTTCATACTGCCTGTTGGAGTTGTTTACCAGAATATCTGAGCAGAGGAATAGAACAGGGGAGGAGTTGCTATGTGCCACGAAGTACCTAAGTTCTGTAATGGCTGTATTAGAAGGCTTAGTTTTCTACAGTGACCTCAGAGTGGCTATGAATTGTGGCCTGTGCCTGTCAATGATCATGGGGTGGGAATTGCCGGACATGCATGAGACAAGTGTGGATGCAAAGAATACTTGGAGTAGGATGGTTGTGGAAGAGCTCGCAATGTCTTTAGCTGTCCCGTGCCTGGCATCAAAATCTTTCATTAATCTTCACAAGCCTGCAATTCATGTTGCAGTTGCTCTGTTAAAACTGCAGAAGATTCCTAAGTGGATGAGATCCGTATTTGATGATACTTGCATATCTAGCATAATTCAAAACCTTGCGGCTAATAATTTGAGCACAGAAATTGTCCTATTATTTCGAGCTCTATTGAACTCAGATTTCTTAAAGATGGAACAAATTGCTAGCTTAAATCAGTTGCTCCAGGTGTGCAGAAAACAAAAGTACACTGACAACACCAAGGATGATGGTGTGCAAGAGCATAGAGTGGTGATCAGCAACCTGGATGATTTGGGACAAGTTTGTGAGTATCTCATTCGTTTGATGTCATCAGAGTCATCTTTAGGTAAGGATTCTGGAGGATCACATCTTGGGAATAAGAGATTGTTAGAAGAAATAGAGCTTTTCTTTAGAACTTTAACGGTACAGGATGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1318

Amino Acids

146.54

Weight (kDa)

5.16

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1397
AasI GACNNNNNNGTC 1 cut(s) 968
AatII GACGTC 1 cut(s) 768
AccB1I GGYRCC 2 cut(s) 464, 2480
AccB7I CCANNNNNTGG 1 cut(s) 1993
AccBSI CCGCTC 3 cut(s) 135, 285, 325
AccI GTMKAC 1 cut(s) 2577
AccII CGCG 2 cut(s) 365, 367
AciI CCGC 9 cut(s) 107, 110, 133, 165, 283, 323, 769, 2682, 3620
AcsI RAATTY 8 cut(s) 94, 1591, 1624, 1766, 2292, 2366, 2709, 3009
AcuI CTGAAG 5 cut(s) 882, 1112, 1245, 1280, 1724
AcvI CACGTG 1 cut(s) 229
AcyI GRCGYC 3 cut(s) 465, 765, 2481
AfiI CCNNNNNNNGG 7 cut(s) 474, 733, 1993, 2188, 3111, 3340, 3481
AflII CTTAAG 1 cut(s) 2960
AflIII ACRYGT 3 cut(s) 228, 1572, 2808
AhlI ACTAGT 2 cut(s) 1045, 1324
AjnI CCWGG 6 cut(s) 123, 255, 3070, 3480, 3720, 3798
AjuI GAANNNNNNNTTGG 2 cut(s) 1689, 1721
Alw21I GWGCWC 5 cut(s) 1793, 2883, 3456, 3638, 3664
Alw26I GTCTC 7 cut(s) 322, 552, 735, 1382, 2831, 2929, 3398
AlwNI CAGNNNCTG 2 cut(s) 2234, 2362
AoxI GGCC 9 cut(s) 127, 258, 568, 738, 933, 943, 2179, 2966, 3355
ApeKI GCWGC 5 cut(s) 422, 2630, 2801, 2951, 3197
ApoI RAATTY 8 cut(s) 94, 1591, 1624, 1766, 2292, 2366, 2709, 3009
ArsI GACNNNNNNTTYG 4 cut(s) 1768, 1800, 2512, 2544
AseI ATTAAT 1 cut(s) 3501
Asp700I GAANNNNTTC 5 cut(s) 615, 1326, 1722, 2315, 3092
AspLEI GCGC 4 cut(s) 367, 467, 726, 2483
AspS9I GGNCC 6 cut(s) 47, 127, 259, 739, 944, 2966
AsuC2I CCSGG 2 cut(s) 1293, 1530
AsuHPI GGTGA 6 cut(s) 89, 286, 299, 2782, 2845, 3799
AsuII TTCGAA 1 cut(s) 92
AsuNHI GCTAGC 1 cut(s) 3701
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 3106
BamHI GGATCC 1 cut(s) 1105
BanI GGYRCC 2 cut(s) 464, 2480
BanII GRGCYC 2 cut(s) 3456, 3664
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 4 cut(s) 75, 587, 755, 2274
Bbv12I GWGCWC 5 cut(s) 1793, 2883, 3456, 3638, 3664
BbvI GCAGC 5 cut(s) 409, 2642, 2788, 2963, 3184
BceAI ACGGC 2 cut(s) 468, 2194
BciT130I CCWGG 6 cut(s) 125, 257, 3072, 3482, 3722, 3800
BclI TGATCA 2 cut(s) 3372, 3789
BcnI CCSGG 2 cut(s) 1293, 1530
BcoDI GTCTC 7 cut(s) 322, 552, 735, 1382, 2831, 2929, 3398
BcuI ACTAGT 2 cut(s) 1045, 1324
BfaI CTAG 8 cut(s) 338, 986, 1046, 1325, 1460, 2921, 3600, 3702
BfmI CTRYAG 5 cut(s) 2221, 2550, 2802, 3325, 3548
BfoI RGCGCY 2 cut(s) 468, 2484
BfrI CTTAAG 1 cut(s) 2960
BisI GCNGC 9 cut(s) 107, 110, 166, 423, 2631, 2802, 2952, 3198, 3621
BlpI GCTNAGC 1 cut(s) 1155
BlsI GCNGC 9 cut(s) 108, 111, 167, 424, 2632, 2803, 2953, 3199, 3622
BmcAI AGTACT 3 cut(s) 1044, 1209, 1713
Bme1390I CCNGG 8 cut(s) 125, 257, 1293, 1530, 3072, 3482, 3722, 3800
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 6 cut(s) 47, 127, 259, 739, 944, 2966
BmiI GGNNCC 7 cut(s) 169, 466, 1107, 1203, 2137, 2482, 2967
BmrFI CCNGG 8 cut(s) 125, 257, 1293, 1530, 3072, 3482, 3722, 3800
BmrI ACTGGG 1 cut(s) 1914
BmtI GCTAGC 1 cut(s) 3705
BmuI ACTGGG 1 cut(s) 1914
BpiI GAAGAC 4 cut(s) 75, 587, 755, 2274
BpmI CTGGAG 5 cut(s) 755, 2114, 3024, 3704, 3894
Bpu10I CCTNAGC 1 cut(s) 508
Bpu1102I GCTNAGC 1 cut(s) 1155
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 1403
BpuMI CCSGG 2 cut(s) 1293, 1530
BsaAI YACGTR 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 3 cut(s) 465, 765, 2481
BsaWI WCCGGW 2 cut(s) 74, 1240
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 469, 499
Bsc4I CCNNNNNNNGG 7 cut(s) 474, 733, 1993, 2188, 3111, 3340, 3481
Bse1I ACTGG 6 cut(s) 1205, 1719, 1881, 1909, 2602, 3089
Bse21I CCTNAGG 1 cut(s) 3106
Bse3DI GCAATG 4 cut(s) 432, 1059, 1779, 3465
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 6 cut(s) 125, 257, 3072, 3482, 3722, 3800
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 7 cut(s) 474, 733, 1993, 2188, 3111, 3340, 3481
BseMI GCAATG 4 cut(s) 432, 1059, 1779, 3465
BseNI ACTGG 6 cut(s) 1205, 1719, 1881, 1909, 2602, 3089
BseRI GAGGAG 7 cut(s) 170, 281, 302, 1297, 1400, 1594, 3275
BseXI GCAGC 5 cut(s) 409, 2642, 2788, 2963, 3184
BseYI CCCAGC 1 cut(s) 246
BsgI GTGCAG 3 cut(s) 2961, 3178, 3748
Bsh1236I CGCG 2 cut(s) 365, 367
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 9 cut(s) 129, 260, 570, 740, 935, 945, 2181, 2968, 3357
BshNI GGYRCC 2 cut(s) 464, 2480
BsiEI CGRYCG 1 cut(s) 451
BsiHKAI GWGCWC 5 cut(s) 1793, 2883, 3456, 3638, 3664
BsiSI CCGG 8 cut(s) 75, 405, 462, 1109, 1241, 1293, 1530, 3392
BslFI GGGAC 4 cut(s) 835, 2653, 3458, 3825
BslI CCNNNNNNNGG 7 cut(s) 474, 733, 1993, 2188, 3111, 3340, 3481
BsmAI GTCTC 7 cut(s) 322, 552, 735, 1382, 2831, 2929, 3398
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 4 cut(s) 835, 2653, 3458, 3825
BsmI GAATGC 3 cut(s) 1103, 1302, 1543
BsnI GGCC 9 cut(s) 129, 260, 570, 740, 935, 945, 2181, 2968, 3357
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 5 cut(s) 1793, 2883, 3456, 3638, 3664
Bsp1407I TGTACA 2 cut(s) 642, 1643
Bsp1720I GCTNAGC 1 cut(s) 1155
Bsp19I CCATGG 1 cut(s) 2410
BspACI CCGC 9 cut(s) 107, 110, 133, 165, 283, 323, 769, 2682, 3620
BspANI GGCC 9 cut(s) 129, 260, 570, 740, 935, 945, 2181, 2968, 3357
BspFNI CGCG 2 cut(s) 365, 367
BspHI TCATGA 2 cut(s) 744, 2818
BspLI GGNNCC 7 cut(s) 169, 466, 1107, 1203, 2137, 2482, 2967
BspMAI CTGCAG 2 cut(s) 2806, 3552
BspOI GCTAGC 1 cut(s) 3705
BspQI GCTCTTC 1 cut(s) 3444
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 2 cut(s) 464, 2480
BspTI CTTAAG 1 cut(s) 2960
BsrBI CCGCTC 3 cut(s) 135, 285, 325
BsrDI GCAATG 4 cut(s) 432, 1059, 1779, 3465
BsrGI TGTACA 2 cut(s) 642, 1643
BsrI ACTGG 6 cut(s) 1205, 1719, 1881, 1909, 2602, 3089
BssNI GRCGYC 3 cut(s) 465, 765, 2481
BssT1I CCWWGG 5 cut(s) 468, 1661, 1705, 2410, 3756
Bst2UI CCWGG 6 cut(s) 125, 257, 3072, 3482, 3722, 3800
Bst6I CTCTTC 4 cut(s) 463, 606, 1686, 3444
BstACI GRCGYC 3 cut(s) 465, 765, 2481
BstAFI CTTAAG 1 cut(s) 2960
BstAPI GCANNNNNTGC 3 cut(s) 2847, 2948, 3144
BstAUI TGTACA 2 cut(s) 642, 1643
BstBAI YACGTR 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 2410
BstEII GGTNACC 1 cut(s) 1669
BstENI CCTNNNNNAGG 1 cut(s) 3109
BstFNI CGCG 2 cut(s) 365, 367
BstH2I RGCGCY 2 cut(s) 468, 2484
BstHHI GCGC 4 cut(s) 367, 467, 726, 2483
BstMAI GTCTC 7 cut(s) 322, 552, 735, 1382, 2831, 2929, 3398
BstMCI CGRYCG 1 cut(s) 451
BstNI CCWGG 6 cut(s) 125, 257, 3072, 3482, 3722, 3800
BstNSI RCATGY 5 cut(s) 1381, 1576, 2812, 2958, 3400
BstPI GGTNACC 1 cut(s) 1669
BstSCI CCNGG 8 cut(s) 123, 255, 1291, 1528, 3070, 3480, 3720, 3798
BstSFI CTRYAG 5 cut(s) 2221, 2550, 2802, 3325, 3548
BstUI CGCG 2 cut(s) 365, 367
BstV1I GCAGC 5 cut(s) 409, 2642, 2788, 2963, 3184
BstV2I GAAGAC 4 cut(s) 75, 587, 755, 2274
BstX2I RGATCY 6 cut(s) 379, 686, 1105, 3100, 3176, 3572
BstXI CCANNNNNNTGG 1 cut(s) 2491
BstYI RGATCY 6 cut(s) 379, 686, 1105, 3100, 3176, 3572
Bsu36I CCTNAGG 1 cut(s) 3106
BsuRI GGCC 9 cut(s) 129, 260, 570, 740, 935, 945, 2181, 2968, 3357
BtgI CCRYGG 1 cut(s) 2410
BtgZI GCGATG 2 cut(s) 87, 346
BtsI GCAGTG 4 cut(s) 502, 2403, 2769, 2883
CaiI CAGNNNCTG 2 cut(s) 2234, 2362
CciI TCATGA 2 cut(s) 744, 2818
CfoI GCGC 4 cut(s) 367, 467, 726, 2483
Cfr13I GGNCC 6 cut(s) 47, 127, 259, 739, 944, 2966
CseI GACGC 1 cut(s) 1786
DinI GGCGCC 2 cut(s) 466, 2482
DraI TTTAAA 2 cut(s) 843, 2707
DrdI GACNNNNNNGTC 1 cut(s) 968
DseDI GACNNNNNNGTC 1 cut(s) 968
Eam1104I CTCTTC 4 cut(s) 463, 606, 1686, 3444
EarI CTCTTC 4 cut(s) 463, 606, 1686, 3444
Ecl136II GAGCTC 2 cut(s) 3454, 3662
Eco130I CCWWGG 5 cut(s) 468, 1661, 1705, 2410, 3756
Eco24I GRGCYC 2 cut(s) 3456, 3664
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 2 cut(s) 3454, 3662
Eco57I CTGAAG 5 cut(s) 882, 1112, 1245, 1280, 1724
Eco72I CACGTG 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 3106
Eco91I GGTNACC 1 cut(s) 1669
EcoICRI GAGCTC 2 cut(s) 3454, 3662
EcoNI CCTNNNNNAGG 1 cut(s) 3109
EcoO109I RGGNCCY 2 cut(s) 259, 739
EcoO65I GGTNACC 1 cut(s) 1669
EcoRI GAATTC 2 cut(s) 94, 2292
EcoRII CCWGG 6 cut(s) 123, 255, 3070, 3480, 3720, 3798
EcoT14I CCWWGG 5 cut(s) 468, 1661, 1705, 2410, 3756
EcoT22I ATGCAT 4 cut(s) 670, 909, 3171, 3402
EcoT38I GRGCYC 2 cut(s) 3456, 3664
EgeI GGCGCC 2 cut(s) 466, 2482
EheI GGCGCC 2 cut(s) 466, 2482
ErhI CCWWGG 5 cut(s) 468, 1661, 1705, 2410, 3756
Esp3I CGTCTC 1 cut(s) 322
FalI AAGNNNNNCTT 2 cut(s) 933, 965
FaqI GGGAC 4 cut(s) 835, 2653, 3458, 3825
FauI CCCGC 1 cut(s) 330
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 2 cut(s) 3372, 3789
FblI GTMKAC 1 cut(s) 2577
Fnu4HI GCNGC 9 cut(s) 107, 110, 166, 423, 2631, 2802, 2952, 3198, 3621
FriOI GRGCYC 2 cut(s) 3456, 3664
Fsp4HI GCNGC 9 cut(s) 107, 110, 166, 423, 2631, 2802, 2952, 3198, 3621
FspBI CTAG 8 cut(s) 338, 986, 1046, 1325, 1460, 2921, 3600, 3702
GlaI GCGC 4 cut(s) 366, 466, 725, 2482
GluI GCNGC 9 cut(s) 107, 110, 166, 423, 2631, 2802, 2952, 3198, 3621
GsaI CCCAGC 1 cut(s) 250
GsuI CTGGAG 5 cut(s) 755, 2114, 3024, 3704, 3894
HaeII RGCGCY 2 cut(s) 468, 2484
HaeIII GGCC 9 cut(s) 129, 260, 570, 740, 935, 945, 2181, 2968, 3357
HapII CCGG 8 cut(s) 75, 405, 462, 1109, 1241, 1293, 1530, 3392
HgaI GACGC 1 cut(s) 1786
HhaI GCGC 4 cut(s) 367, 467, 726, 2483
Hin1I GRCGYC 3 cut(s) 465, 765, 2481
Hin6I GCGC 4 cut(s) 365, 465, 724, 2481
HinP1I GCGC 4 cut(s) 365, 465, 724, 2481
HincII GTYRAC 4 cut(s) 1535, 2113, 2578, 2980
HindII GTYRAC 4 cut(s) 1535, 2113, 2578, 2980
HindIII AAGCTT 4 cut(s) 1161, 1262, 2889, 3191
HpaII CCGG 8 cut(s) 75, 405, 462, 1109, 1241, 1293, 1530, 3392
HphI GGTGA 6 cut(s) 89, 286, 299, 2782, 2845, 3799
Hpy99I CGWCG 3 cut(s) 14, 353, 356
HpyCH4IV ACGT 3 cut(s) 228, 765, 1802
HpySE526I ACGT 3 cut(s) 228, 765, 1802
Hsp92I GRCGYC 3 cut(s) 465, 765, 2481
HspAI GCGC 4 cut(s) 365, 465, 724, 2481
KasI GGCGCC 2 cut(s) 464, 2480
Ksp22I TGATCA 2 cut(s) 3372, 3789
LguI GCTCTTC 1 cut(s) 3444
LmnI GCTCC 7 cut(s) 125, 140, 173, 290, 2095, 2135, 3723
Lsp1109I GCAGC 5 cut(s) 409, 2642, 2788, 2963, 3184
MaeI CTAG 8 cut(s) 338, 986, 1046, 1325, 1460, 2921, 3600, 3702
MaeII ACGT 3 cut(s) 228, 765, 1802
MaeIII GTNAC 5 cut(s) 77, 385, 1669, 2257, 3329
MbiI CCGCTC 3 cut(s) 135, 285, 325
MfeI CAATTG 2 cut(s) 2445, 2571
MflI RGATCY 6 cut(s) 379, 686, 1105, 3100, 3176, 3572
MhlI GDGCHC 5 cut(s) 1793, 2883, 3456, 3638, 3664
Mly113I GGCGCC 2 cut(s) 465, 2481
MlyI GAGTC 6 cut(s) 65, 487, 796, 1595, 2660, 3860
MmeI TCCRAC 5 cut(s) 58, 291, 1542, 2612, 3195
Mph1103I ATGCAT 4 cut(s) 670, 909, 3171, 3402
MroXI GAANNNNTTC 5 cut(s) 615, 1326, 1722, 2315, 3092
MslI CAYNNNNRTG 5 cut(s) 1362, 1813, 2156, 2311, 2475
MspCI CTTAAG 1 cut(s) 2960
MspI CCGG 8 cut(s) 75, 405, 462, 1109, 1241, 1293, 1530, 3392
MspR9I CCNGG 8 cut(s) 125, 257, 1293, 1530, 3072, 3482, 3722, 3800
MunI CAATTG 2 cut(s) 2445, 2571
Mva1269I GAATGC 3 cut(s) 1103, 1302, 1543
MvaI CCWGG 6 cut(s) 125, 257, 3072, 3482, 3722, 3800
MvnI CGCG 2 cut(s) 365, 367
NarI GGCGCC 2 cut(s) 465, 2481
NciI CCSGG 2 cut(s) 1293, 1530
NcoI CCATGG 1 cut(s) 2410
NdeI CATATG 1 cut(s) 829
NheI GCTAGC 1 cut(s) 3701
NlaIV GGNNCC 7 cut(s) 169, 466, 1107, 1203, 2137, 2482, 2967
NmeAIII GCCGAG 2 cut(s) 418, 2224
NmuCI GTSAC 3 cut(s) 77, 385, 3329
NsiI ATGCAT 4 cut(s) 670, 909, 3171, 3402
NspI RCATGY 5 cut(s) 1381, 1576, 2812, 2958, 3400
NspV TTCGAA 1 cut(s) 92
PaeI GCATGC 1 cut(s) 1381
PagI TCATGA 2 cut(s) 744, 2818
PasI CCCWGGG 1 cut(s) 124
PciI ACATGT 2 cut(s) 1572, 2808
PciSI GCTCTTC 1 cut(s) 3444
PcsI WCGNNNNNNNCGW 3 cut(s) 110, 381, 1784
PctI GAATGC 3 cut(s) 1103, 1302, 1543
PdmI GAANNNNTTC 5 cut(s) 615, 1326, 1722, 2315, 3092
PflMI CCANNNNNTGG 1 cut(s) 1993
PkrI GCNGC 9 cut(s) 108, 111, 167, 424, 2632, 2803, 2953, 3199, 3622
Ple19I CGATCG 1 cut(s) 451
PleI GAGTC 6 cut(s) 65, 486, 796, 1595, 2659, 3859
PluTI GGCGCC 2 cut(s) 468, 2484
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 6 cut(s) 65, 486, 796, 1595, 2659, 3859
Ppu21I YACGTR 1 cut(s) 229
PscI ACATGT 2 cut(s) 1572, 2808
PshBI ATTAAT 1 cut(s) 3501
PsiI TTATAA 1 cut(s) 1397
Psp124BI GAGCTC 2 cut(s) 3456, 3664
Psp6I CCWGG 6 cut(s) 123, 255, 3070, 3480, 3720, 3798
PspCI CACGTG 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 1669
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 6 cut(s) 123, 255, 3070, 3480, 3720, 3798
PspN4I GGNNCC 7 cut(s) 169, 466, 1107, 1203, 2137, 2482, 2967
PspPI GGNCC 6 cut(s) 47, 127, 259, 739, 944, 2966
PsrI GAACNNNNNNTAC 2 cut(s) 1212, 1244
PstI CTGCAG 2 cut(s) 2806, 3552
PstNI CAGNNNCTG 2 cut(s) 2234, 2362
PsuI RGATCY 6 cut(s) 379, 686, 1105, 3100, 3176, 3572
PvuI CGATCG 1 cut(s) 451
RseI CAYNNNNRTG 5 cut(s) 1362, 1813, 2156, 2311, 2475
SacI GAGCTC 2 cut(s) 3456, 3664
SalI GTCGAC 1 cut(s) 2576
SapI GCTCTTC 1 cut(s) 3444
SatI GCNGC 9 cut(s) 107, 110, 166, 423, 2631, 2802, 2952, 3198, 3621
Sau96I GGNCC 6 cut(s) 47, 127, 259, 739, 944, 2966
ScaI AGTACT 3 cut(s) 1044, 1209, 1713
SchI GAGTC 6 cut(s) 65, 487, 796, 1595, 2660, 3860
ScrFI CCNGG 8 cut(s) 125, 257, 1293, 1530, 3072, 3482, 3722, 3800
SduI GDGCHC 5 cut(s) 1793, 2883, 3456, 3638, 3664
SfcI CTRYAG 5 cut(s) 2221, 2550, 2802, 3325, 3548
SfoI GGCGCC 2 cut(s) 466, 2482
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 5 cut(s) 1362, 1813, 2156, 2311, 2475
SmlI CTYRAG 2 cut(s) 1382, 2960
SmoI CTYRAG 2 cut(s) 1382, 2960
SpeI ACTAGT 2 cut(s) 1045, 1324
SphI GCATGC 1 cut(s) 1381
SsiI CCGC 9 cut(s) 107, 110, 133, 165, 283, 323, 769, 2682, 3620
SspDI GGCGCC 2 cut(s) 464, 2480
SspMI CTAG 8 cut(s) 338, 986, 1046, 1325, 1460, 2921, 3600, 3702
SstI GAGCTC 2 cut(s) 3456, 3664
StyD4I CCNGG 8 cut(s) 123, 255, 1291, 1528, 3070, 3480, 3720, 3798
StyI CCWWGG 5 cut(s) 468, 1661, 1705, 2410, 3756
TaiI ACGT 3 cut(s) 231, 768, 1805
TaqI TCGA 7 cut(s) 9, 92, 348, 1730, 1787, 2577, 3658
TatI WGTACW 8 cut(s) 3, 642, 1042, 1207, 1511, 1643, 1711, 3741
TauI GCSGC 4 cut(s) 109, 112, 168, 3623
TseFI GTSAC 3 cut(s) 77, 385, 3329
TseI GCWGC 5 cut(s) 422, 2630, 2801, 2951, 3197
Tsp45I GTSAC 3 cut(s) 77, 385, 3329
TspGWI ACGGA 2 cut(s) 60, 3565
Van91I CCANNNNNTGG 1 cut(s) 1993
Vha464I CTTAAG 1 cut(s) 2960
VpaK11BI GGWCC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 3501
XagI CCTNNNNNAGG 1 cut(s) 3109
XapI RAATTY 8 cut(s) 94, 1591, 1624, 1766, 2292, 2366, 2709, 3009
XceI RCATGY 5 cut(s) 1381, 1576, 2812, 2958, 3400
XmiI GTMKAC 1 cut(s) 2577
XmnI GAANNNNTTC 5 cut(s) 615, 1326, 1722, 2315, 3092
XspI CTAG 8 cut(s) 338, 986, 1046, 1325, 1460, 2921, 3600, 3702
ZraI GACGTC 1 cut(s) 766
ZrmI AGTACT 3 cut(s) 1044, 1209, 1713
Zsp2I ATGCAT 4 cut(s) 670, 909, 3171, 3402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.