Rh6BG291800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000325
Physical Location & Seq
Forward (+)
51743612 .. 51744545
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG291800.1

Sequence Viewer

Length: 387 bp
ATGGCAAATAGGAGAAGACTTGAAAATAAAGACATGAACTCTTCATCTGTTGCTTCCAAAATTGCATCTACAATGCAATGTCCTTCTATGACGCAAAGTGTTTCAGCGACACAACATGCTTCTTCTACACAAACTCTTCTACCTCTTTCTATGCAAATGGTTTCTAATGTGCAACTTACCTTGCCTCTGTCACAACCTGTTCTACCTTTAGCACCCTTATTGCAACTGGAACCTAATTGTGGTAAGTTAACAATGGACATGCCCATTAAAGAGAGAGAATTGGCTCAGCCTCCATTTATGCAGAGACAATCCAAAGTAGCAGCAAGCATGGAGAATGGCCAGATGGTCGAGGCTGGGGAGTGGTTGCAATTTCGCAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.2

Weight (kDa)

9.18

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 298
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 298
BisI GCNGC 1 cut(s) 321
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 339
Bsp1720I GCTNAGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 231
Bst6I CTCTTC 2 cut(s) 46, 141
BstC8I GCNNGC 2 cut(s) 325, 377
BstDEI CTNAG 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 298
BstNSI RCATGY 2 cut(s) 119, 262
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 325, 377
CseI GACGC 1 cut(s) 100
CviAII CATG 4 cut(s) 34, 116, 259, 328
CviJI RGCY 4 cut(s) 284, 289, 339, 353
CviKI_1 RGCY 4 cut(s) 284, 289, 339, 353
DdeI CTNAG 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 46, 141
EarI CTCTTC 2 cut(s) 46, 141
FaeI CATG 4 cut(s) 37, 119, 262, 331
FaiI YATR 7 cut(s) 35, 89, 117, 152, 260, 299, 329
FatI CATG 4 cut(s) 33, 115, 258, 327
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 339
HgaI GACGC 1 cut(s) 100
Hin1II CATG 4 cut(s) 37, 119, 262, 331
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 7 cut(s) 65, 76, 154, 172, 223, 301, 367
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 4 cut(s) 37, 119, 262, 331
KspAI GTTAAC 1 cut(s) 249
LpnPI CCDG 4 cut(s) 210, 212, 339, 353
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 189
MboII GAAGA 4 cut(s) 27, 33, 114, 128
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 5 cut(s) 60, 235, 278, 368, 382
MluNI TGGCCA 1 cut(s) 339
MnlI CCTC 4 cut(s) 153, 195, 300, 343
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 2 cut(s) 248, 267
Msp20I TGGCCA 1 cut(s) 339
NlaIII CATG 4 cut(s) 37, 119, 262, 331
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 189
NspI RCATGY 2 cut(s) 119, 262
PkrI GCNGC 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 248, 267
SatI GCNGC 1 cut(s) 321
SetI ASST 5 cut(s) 145, 182, 199, 208, 235
SfaNI GCATC 1 cut(s) 74
Sse9I AATT 5 cut(s) 60, 235, 278, 368, 382
TaqI TCGA 1 cut(s) 348
TasI AATT 5 cut(s) 60, 235, 278, 368, 382
Tru1I TTAA 2 cut(s) 248, 267
Tru9I TTAA 2 cut(s) 248, 267
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 33, 50
XceI RCATGY 2 cut(s) 119, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.