Rh4AG144400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000325
Physical Location & Seq
Reverse (-)
36521772 .. 36525621
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG144400.1

Sequence Viewer

Length: 951 bp
ATGAGTATTACTAGTTATCATCCTACTGAGATTCACGGTAATCCTAAGGAGTCGATTGGCAAACGGTATGGCTACTTGTGCCGCACTTGTCGTGATATTTTAACTGTTGCAGTAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCGCACTGAGAAAGAGGGGAGAAGTTCTAGTGATTGCAGCGAAGTGAATACTACTTTTGGTCAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTCTGTGGAGTTAAAAGAAAAGCTACAATTGGTCGTCCACGTACCAGATTCAAAGACCCGGCTGAACAAAAAAAGAGGAAAGTACCAAAGAAAAGCACAAAAGCTCCCACAAGAAGGAAAATACCCATGCAGGAATTTGAGAGCATTTTGGTCAGTTCAGAAACACACCAAAATAGTGAACGTGATGTTCAACTATCTGGTGTTTTGACTCAAGAAGGTGAGATTGGAACTTGGGACCTCAGACGTGGGGTGAATGCTGAATCGCCTTCTTCCTCAACTCGTCGCGACCTCCTTCAATTCGTGGATTGTCGCCGCCTTCCTCTACGCCTTCTTCTTCAGCTTGTCGTGGATTGTCGCCGCCTTCCTCGGCGCCATCTTCTTCAGGTAGTCGTGGATCCTCGCCGGGCCTTCCCCTGCGCCTTCTTCTTCAGCTCGTCGCTGGTGATCTCCTTCAATTCATGGATTCTCGTCACTGAAAGGTATGACATCAATGAAAGCATAAATGAGATGGAGAAGCAAACTTTGGTGACAGGTTTAGTATTTCACCCTCATAGGGATCGTAAGATTGGATTAGGAATCAAAGATATAAAGGCTATGCTCTTGGGGCTCAGGTCTGGAGCTTTTTGGTGCATGCAAATTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

316

Amino Acids

36.17

Weight (kDa)

9.31

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 675
AccII CGCG 1 cut(s) 591
AciI CCGC 3 cut(s) 82, 619, 664
AclWI GGATC 3 cut(s) 695, 708, 870
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 3 cut(s) 626, 671, 718
AcyI GRCGYC 1 cut(s) 676
AfaI GTAC 2 cut(s) 349, 390
AfiI CCNNNNNNNGG 2 cut(s) 420, 859
AgsI TTSAA 5 cut(s) 281, 358, 497, 602, 760
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 1 cut(s) 551
AjuI GAANNNNNNNTTGG 4 cut(s) 513, 545, 812, 844
AluBI AGCT 5 cut(s) 329, 410, 646, 738, 926
AluI AGCT 5 cut(s) 329, 410, 646, 738, 926
AlwI GGATC 3 cut(s) 695, 708, 870
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 2 cut(s) 678, 725
AspS9I GGNCC 2 cut(s) 541, 711
AsuC2I CCSGG 2 cut(s) 365, 710
AsuHPI GGTGA 5 cut(s) 536, 568, 760, 842, 844
AvaII GGWCC 1 cut(s) 541
AxyI CCTNAGG 1 cut(s) 45
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 915
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 687, 808
BcnI CCSGG 2 cut(s) 365, 710
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 219
BfoI RGCGCY 1 cut(s) 679
BisI GCNGC 4 cut(s) 82, 229, 619, 664
BlsI GCNGC 4 cut(s) 83, 230, 620, 665
Bme1390I CCNGG 2 cut(s) 365, 710
Bme18I GGWCC 1 cut(s) 541
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 541, 711
BmiI GGNNCC 3 cut(s) 542, 677, 702
BmrFI CCNGG 2 cut(s) 365, 710
BmsI GCATC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 1 cut(s) 914
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 365, 710
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 420, 859
Bse21I CCTNAGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 420, 859
BseMII CTCAG 4 cut(s) 18, 189, 559, 928
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 675
BsiSI CCGG 2 cut(s) 365, 709
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 420, 859
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 915
Bsp143I GATC 3 cut(s) 700, 750, 862
Bsp68I TCGCGA 1 cut(s) 591
BspACI CCGC 3 cut(s) 82, 619, 664
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 4 cut(s) 19, 190, 558, 927
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 3 cut(s) 542, 677, 702
BspPI GGATC 3 cut(s) 695, 708, 870
BspT107I GGYRCC 1 cut(s) 675
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 3 cut(s) 700, 750, 862
BssNI GRCGYC 1 cut(s) 676
Bst4CI ACNGT 3 cut(s) 38, 66, 106
Bst6I CTCTTC 2 cut(s) 117, 255
BstACI GRCGYC 1 cut(s) 676
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 938
BstDEI CTNAG 6 cut(s) 27, 45, 172, 198, 545, 914
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 2 cut(s) 678, 725
BstKTI GATC 3 cut(s) 703, 753, 865
BstMBI GATC 3 cut(s) 700, 750, 862
BstMWI GCNNNNNNNGC 2 cut(s) 78, 910
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 2 cut(s) 363, 708
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 713
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 195, 777
BtuMI TCGCGA 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 938
CfoI GCGC 2 cut(s) 678, 725
Cfr13I GGNCC 2 cut(s) 541, 711
Csp6I GTAC 2 cut(s) 348, 389
CviAII CATG 4 cut(s) 143, 433, 765, 937
CviQI GTAC 2 cut(s) 348, 389
DdeI CTNAG 6 cut(s) 27, 45, 172, 198, 545, 914
DinI GGCGCC 1 cut(s) 677
DpnI GATC 3 cut(s) 702, 752, 864
DpnII GATC 3 cut(s) 700, 750, 862
Eam1104I CTCTTC 2 cut(s) 117, 255
EarI CTCTTC 2 cut(s) 117, 255
Eco24I GRGCYC 1 cut(s) 915
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 3 cut(s) 626, 671, 718
Eco81I CCTNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 915
EgeI GGCGCC 1 cut(s) 677
EheI GGCGCC 1 cut(s) 677
FaeI CATG 4 cut(s) 146, 436, 768, 940
FaqI GGGAC 1 cut(s) 554
FatI CATG 4 cut(s) 142, 432, 764, 936
Fnu4HI GCNGC 4 cut(s) 82, 229, 619, 664
FokI GGATG 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 4 cut(s) 82, 229, 619, 664
FspBI CTAG 2 cut(s) 12, 219
GlaI GCGC 2 cut(s) 677, 724
GluI GCNGC 4 cut(s) 82, 229, 619, 664
GsuI CTGGAG 1 cut(s) 942
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 1 cut(s) 713
HapII CCGG 2 cut(s) 365, 709
HhaI GCGC 2 cut(s) 678, 725
Hin1I GRCGYC 1 cut(s) 676
Hin1II CATG 4 cut(s) 146, 436, 768, 940
Hin6I GCGC 2 cut(s) 676, 723
HinP1I GCGC 2 cut(s) 676, 723
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 7 cut(s) 31, 50, 354, 514, 566, 769, 882
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 2 cut(s) 365, 709
HphI GGTGA 5 cut(s) 536, 568, 760, 842, 844
Hpy166II GTNNAC 3 cut(s) 129, 344, 485
Hpy188I TCNGA 2 cut(s) 466, 548
Hpy188III TCNNGA 4 cut(s) 92, 518, 590, 921
Hpy8I GTNNAC 3 cut(s) 129, 344, 485
Hpy99I CGWCG 2 cut(s) 591, 745
HpyCH4III ACNGT 3 cut(s) 38, 66, 106
HpyCH4IV ACGT 3 cut(s) 346, 487, 550
HpyCH4V TGCA 6 cut(s) 110, 140, 228, 436, 936, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 910
HpyF3I CTNAG 6 cut(s) 27, 45, 172, 198, 545, 914
HpySE526I ACGT 3 cut(s) 346, 487, 550
Hsp92I GRCGYC 1 cut(s) 676
Hsp92II CATG 4 cut(s) 146, 436, 768, 940
HspAI GCGC 2 cut(s) 676, 723
KasI GGCGCC 1 cut(s) 675
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 700, 750, 862
LmnI GCTCC 2 cut(s) 415, 923
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 12, 219
MaeII ACGT 3 cut(s) 346, 487, 550
MaeIII GTNAC 2 cut(s) 775, 832
MalI GATC 3 cut(s) 702, 752, 864
MboI GATC 3 cut(s) 700, 750, 862
MboII GAAGA 9 cut(s) 134, 272, 567, 629, 632, 674, 677, 721, 724
MfeI CAATTG 2 cut(s) 303, 333
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 915
MluCI AATT 6 cut(s) 303, 333, 440, 602, 760, 942
Mly113I GGCGCC 1 cut(s) 676
MlyI GAGTC 2 cut(s) 59, 508
MseI TTAA 4 cut(s) 101, 128, 179, 318
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 2 cut(s) 365, 709
MspR9I CCNGG 2 cut(s) 365, 710
MunI CAATTG 2 cut(s) 303, 333
Mva1269I GAATGC 1 cut(s) 565
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 78, 910
NarI GGCGCC 1 cut(s) 676
NciI CCSGG 2 cut(s) 365, 710
NdeII GATC 3 cut(s) 700, 750, 862
NlaIII CATG 4 cut(s) 146, 436, 768, 940
NlaIV GGNNCC 3 cut(s) 542, 677, 702
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 775, 832
NruI TCGCGA 1 cut(s) 591
NspI RCATGY 1 cut(s) 940
PaeI GCATGC 1 cut(s) 940
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 5 cut(s) 31, 354, 566, 769, 882
PkrI GCNGC 4 cut(s) 83, 230, 620, 665
PleI GAGTC 2 cut(s) 58, 508
PluTI GGCGCC 1 cut(s) 679
PpsI GAGTC 2 cut(s) 58, 508
Ppu21I YACGTR 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 541
PspN4I GGNNCC 3 cut(s) 542, 677, 702
PspPI GGNCC 2 cut(s) 541, 711
PspPPI RGGWCCY 1 cut(s) 541
PsuI RGATCY 1 cut(s) 700
RruI TCGCGA 1 cut(s) 591
RsaI GTAC 2 cut(s) 349, 390
RsaNI GTAC 2 cut(s) 348, 389
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 4 cut(s) 101, 128, 179, 318
SatI GCNGC 4 cut(s) 82, 229, 619, 664
Sau3AI GATC 3 cut(s) 700, 750, 862
Sau96I GGNCC 2 cut(s) 541, 711
SchI GAGTC 2 cut(s) 59, 508
ScrFI CCNGG 2 cut(s) 365, 710
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 677
SinI GGWCC 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 11
SphI GCATGC 1 cut(s) 940
Sse9I AATT 6 cut(s) 303, 333, 440, 602, 760, 942
SsiI CCGC 3 cut(s) 82, 619, 664
SspDI GGCGCC 1 cut(s) 675
SspMI CTAG 2 cut(s) 12, 219
StyD4I CCNGG 2 cut(s) 363, 708
TaaI ACNGT 3 cut(s) 38, 66, 106
TaiI ACGT 3 cut(s) 349, 490, 553
TaqI TCGA 1 cut(s) 53
TasI AATT 6 cut(s) 303, 333, 440, 602, 760, 942
TauI GCSGC 3 cut(s) 84, 621, 666
TfiI GAWTC 5 cut(s) 31, 354, 566, 769, 882
Tru1I TTAA 4 cut(s) 101, 128, 179, 318
Tru9I TTAA 4 cut(s) 101, 128, 179, 318
TscAI CASTG 2 cut(s) 202, 784
TseFI GTSAC 2 cut(s) 775, 832
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 2 cut(s) 775, 832
TspDTI ATGAA 4 cut(s) 135, 159, 753, 813
TspRI CASTG 2 cut(s) 202, 784
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 1 cut(s) 440
XceI RCATGY 1 cut(s) 940
XspI CTAG 2 cut(s) 12, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.