Rh3DG120600

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
10232494 .. 10236108
3615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG120600.1

Sequence Viewer

Length: 1218 bp
ATGGATACCGTCTCTGACGAACAGACGCTTGGACAGGAGGTTACAAAGAATACAGAATGTATAAGTAATGAGTTATTAAGTGGTAGTGAAGTTGCTTTTCCAGATGAGAATGAATTCAGTTTGCAATGTAATGATGAGTTCAGTTTGCTGGGTGAGAGTGAAATCGATTTGCAAGGTGAGGAAGAAGATGATTTAGTAAGTGAAAATGAAGTTGATGTGCAACCTGAGGAGACTTTTCAATCAAGAAGTAATGATTCTTTTTTAAACTCAAATGAAGACAAAGAGAAGAAAGAAGAACTATATATCGGAATGGAGTTTAGTTCCGATGAGAGTGCATATAGAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGGAAACAACGCAGGACAAGAAACAAGAAGGGTTTGGTTGTTAGGTTAGTTTATTGTTGCTCAAAAGAAGAGATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGCAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGTCGATTGGAAAGCGATACAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCTCAGAACATGAGGAACTAACAAGGTATGCAAATGAATATGCCATTGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAACTGTTGAAAGAAGATGCATGGGTGATTCAAACATCAGATGTTGGAGCTTTAGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGCGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAGAGTTGTAAAGCCACATCTAAAGCATCAACATCTCTAGCAAGTAAAGCCGCAGCAAAGAAACAACTATCCTTCCAGGACTCTATTCCTACTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCTAATGCTTGATTCAACAACTCAAGAGTCCAATCTTAGTGCTGGTACCCAAGTATCAGTTTATGGCACAGGTCTAACTTTGCAGAACGACTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATATTTGCTCTTCACAAAGCAATGAAGGAGGCAAAGAGCAGTCTGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

405

Amino Acids

45.68

Weight (kDa)

4.98

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 864
Acc65I GGTACC 1 cut(s) 1079
AccB1I GGYRCC 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 479
AccII CGCG 1 cut(s) 864
AciI CCGC 2 cut(s) 864, 951
AcsI RAATTY 3 cut(s) 113, 730, 1152
AcvI CACGTG 1 cut(s) 827
AfaI GTAC 1 cut(s) 1081
AgsI TTSAA 7 cut(s) 239, 376, 760, 782, 896, 1050, 1158
AhlI ACTAGT 1 cut(s) 992
AjnI CCWGG 2 cut(s) 975, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 4 cut(s) 344, 491, 800, 845
AluI AGCT 4 cut(s) 344, 491, 800, 845
Alw26I GTCTC 2 cut(s) 16, 224
Ama87I CYCGRG 1 cut(s) 600
ApeKI GCWGC 1 cut(s) 953
ApoI RAATTY 3 cut(s) 113, 730, 1152
Asp700I GAANNNNTTC 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 1079
AsuHPI GGTGA 5 cut(s) 164, 188, 539, 787, 821
AvaI CYCGRG 1 cut(s) 600
AxyI CCTNAGG 1 cut(s) 225
BaeI ACNNNNGTAYC 4 cut(s) 1071, 1071, 1104, 1104
BanI GGYRCC 1 cut(s) 1079
BbrPI CACGTG 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 965
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 2 cut(s) 977, 1148
BcoDI GTCTC 2 cut(s) 16, 224
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 2 cut(s) 938, 993
BisI GCNGC 2 cut(s) 951, 954
BlsI GCNGC 2 cut(s) 952, 955
Bme1390I CCNGG 2 cut(s) 977, 1148
BmeT110I CYCGRG 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 1081
BmrFI CCNGG 2 cut(s) 977, 1148
BmsI GCATC 4 cut(s) 552, 671, 757, 935
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 1130
BpuEI CTTGAG 1 cut(s) 1041
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 827
Bse21I CCTNAGG 1 cut(s) 225
Bse3DI GCAATG 2 cut(s) 131, 1192
BseBI CCWGG 2 cut(s) 977, 1148
BseCI ATCGAT 1 cut(s) 165
BseGI GGATG 1 cut(s) 662
BseMI GCAATG 2 cut(s) 131, 1192
BseMII CTCAG 3 cut(s) 216, 549, 687
BseRI GAGGAG 2 cut(s) 242, 485
BseXI GCAGC 1 cut(s) 965
BseYI CCCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 864
Bsh1285I CGRYCG 1 cut(s) 868
BshNI GGYRCC 1 cut(s) 1079
BshVI ATCGAT 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 600
BsmAI GTCTC 2 cut(s) 16, 224
BsmBI CGTCTC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 600
BspACI CCGC 2 cut(s) 864, 951
BspCNI CTCAG 3 cut(s) 217, 550, 686
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 1 cut(s) 864
BspLI GGNNCC 1 cut(s) 1081
BspQI GCTCTTC 1 cut(s) 1180
BspT107I GGYRCC 1 cut(s) 1079
BsrDI GCAATG 2 cut(s) 131, 1192
BssNAI GTATAC 1 cut(s) 480
Bst1107I GTATAC 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 977, 1148
Bst4CI ACNGT 3 cut(s) 10, 756, 850
Bst6I CTCTTC 4 cut(s) 444, 506, 896, 1180
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 827
BstC8I GCNNGC 1 cut(s) 1007
BstDEI CTNAG 4 cut(s) 225, 558, 673, 1070
BstF5I GGATG 1 cut(s) 662
BstFNI CGCG 1 cut(s) 864
BstMAI GTCTC 2 cut(s) 16, 224
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 3 cut(s) 341, 668, 947
BstNI CCWGG 2 cut(s) 977, 1148
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 975, 1146
BstUI CGCG 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 965
BstV2I GAAGAC 1 cut(s) 282
BstZ17I GTATAC 1 cut(s) 480
Bsu15I ATCGAT 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 1 cut(s) 662
Cac8I GCNNGC 1 cut(s) 1007
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 1080
CviAII CATG 4 cut(s) 464, 680, 771, 872
CviJI RGCY 7 cut(s) 344, 491, 633, 800, 845, 914, 950
CviKI_1 RGCY 7 cut(s) 344, 491, 633, 800, 845, 914, 950
CviQI GTAC 1 cut(s) 1080
DdeI CTNAG 4 cut(s) 225, 558, 673, 1070
DraI TTTAAA 2 cut(s) 264, 883
DrdI GACNNNNNNGTC 1 cut(s) 864
DseDI GACNNNNNNGTC 1 cut(s) 864
Eam1104I CTCTTC 4 cut(s) 444, 506, 896, 1180
EarI CTCTTC 4 cut(s) 444, 506, 896, 1180
Eco72I CACGTG 1 cut(s) 827
Eco81I CCTNAGG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 600
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 975, 1146
EcoT22I ATGCAT 1 cut(s) 772
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 4 cut(s) 467, 683, 774, 875
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FatI CATG 4 cut(s) 463, 679, 770, 871
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 2 cut(s) 951, 954
FokI GGATG 1 cut(s) 649
Fsp4HI GCNGC 2 cut(s) 951, 954
FspBI CTAG 2 cut(s) 938, 993
GluI GCNGC 2 cut(s) 951, 954
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 1130
HgaI GACGC 1 cut(s) 34
Hin1II CATG 4 cut(s) 467, 683, 774, 875
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 7 cut(s) 254, 498, 778, 980, 1046, 1061, 1162
HphI GGTGA 5 cut(s) 164, 188, 539, 787, 821
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 6 cut(s) 16, 308, 325, 559, 676, 790
Hpy188III TCNNGA 7 cut(s) 101, 243, 602, 653, 893, 1058, 1209
Hpy8I GTNNAC 1 cut(s) 480
HpyAV CCTTC 5 cut(s) 403, 800, 890, 982, 1184
HpyCH4III ACNGT 3 cut(s) 10, 756, 850
HpyCH4IV ACGT 1 cut(s) 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 668, 947
HpyF3I CTNAG 4 cut(s) 225, 558, 673, 1070
HpySE526I ACGT 1 cut(s) 826
Hsp92II CATG 4 cut(s) 467, 683, 774, 875
KpnI GGTACC 1 cut(s) 1083
LguI GCTCTTC 1 cut(s) 1180
LmnI GCTCC 2 cut(s) 797, 1149
Lsp1109I GCAGC 1 cut(s) 965
LweI GCATC 4 cut(s) 552, 671, 757, 935
MaeI CTAG 2 cut(s) 938, 993
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 2 cut(s) 40, 995
MfeI CAATTG 1 cut(s) 1000
MluCI AATT 5 cut(s) 113, 646, 730, 1000, 1152
MlyI GAGTC 3 cut(s) 492, 974, 1070
MmeI TCCRAC 2 cut(s) 775, 832
Mph1103I ATGCAT 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 5 cut(s) 77, 263, 726, 834, 882
MslI CAYNNNNRTG 1 cut(s) 1139
MspR9I CCNGG 2 cut(s) 977, 1148
MunI CAATTG 1 cut(s) 1000
MvaI CCWGG 2 cut(s) 977, 1148
MvnI CGCG 1 cut(s) 864
MwoI GCNNNNNNNGC 3 cut(s) 341, 668, 947
NlaIII CATG 4 cut(s) 467, 683, 774, 875
NlaIV GGNNCC 1 cut(s) 1081
NmuCI GTSAC 1 cut(s) 995
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 1180
PcsI WCGNNNNNNNCGW 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 4 cut(s) 254, 778, 1046, 1162
PfoI TCCNGGA 2 cut(s) 975, 1146
PkrI GCNGC 2 cut(s) 952, 955
PleI GAGTC 3 cut(s) 492, 974, 1069
PmaCI CACGTG 1 cut(s) 827
PmlI CACGTG 1 cut(s) 827
PpsI GAGTC 3 cut(s) 492, 974, 1069
Ppu21I YACGTR 1 cut(s) 827
Psp6I CCWGG 2 cut(s) 975, 1146
PspCI CACGTG 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 975, 1146
PspN4I GGNNCC 1 cut(s) 1081
RsaI GTAC 1 cut(s) 1081
RsaNI GTAC 1 cut(s) 1080
RseI CAYNNNNRTG 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 1180
SaqAI TTAA 5 cut(s) 77, 263, 726, 834, 882
SatI GCNGC 2 cut(s) 951, 954
SchI GAGTC 3 cut(s) 492, 974, 1070
ScrFI CCNGG 2 cut(s) 977, 1148
SfaNI GCATC 4 cut(s) 552, 671, 757, 935
Sfr274I CTCGAG 1 cut(s) 600
SlaI CTCGAG 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 2 cut(s) 600, 1056
SmoI CTYRAG 2 cut(s) 600, 1056
SpeI ACTAGT 1 cut(s) 992
Sse9I AATT 5 cut(s) 113, 646, 730, 1000, 1152
SsiI CCGC 2 cut(s) 864, 951
SspMI CTAG 2 cut(s) 938, 993
StyD4I CCNGG 2 cut(s) 975, 1146
TaaI ACNGT 3 cut(s) 10, 756, 850
TaiI ACGT 1 cut(s) 829
TaqI TCGA 3 cut(s) 165, 601, 614
TasI AATT 5 cut(s) 113, 646, 730, 1000, 1152
TauI GCSGC 1 cut(s) 953
TfiI GAWTC 4 cut(s) 254, 778, 1046, 1162
Tru1I TTAA 5 cut(s) 77, 263, 726, 834, 882
Tru9I TTAA 5 cut(s) 77, 263, 726, 834, 882
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 1 cut(s) 953
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 9 cut(s) 126, 222, 288, 585, 720, 1038, 1044, 1175, 1203
XapI RAATTY 3 cut(s) 113, 730, 1152
XceI RCATGY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 2 cut(s) 938, 993
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.