protein FAR1-RELATED SEQUENCE
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol_B_exo1 | PF03104 | 196 - 402 | 4.3e-56 | DNA polymerase family B, exonuclease domain |
| DNA_pol_B | PF00136 | 750 - 1073 | 3e-18 | DNA polymerase family B |
| POL2_thumb | PF22634 | 948 - 1122 | 2.9e-78 | DNA polymerase epsilon catalytic subunit A, thumb domain |
| DUF1744 | PF08490 | 1534 - 1900 | 1.3e-113 | Domain of unknown function (DUF1744) |
| zf_DPOE_2 | PF23250 | 2077 - 2143 | 1.5e-19 | Zinc finger domain of DNA polymerase-epsilon |
| zf-DPOE | PF22912 | 2148 - 2205 | 5.3e-12 | Zinc finger domain of DNA polymerase-epsilon |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3309 |
| AarI | CACCTGC | 2 cut(s) | 4993, 5302 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2132 |
| Acc16I | TGCGCA | 2 cut(s) | 1406, 2384 |
| Acc36I | ACCTGC | 2 cut(s) | 4993, 5302 |
| Acc65I | GGTACC | 1 cut(s) | 834 |
| AccB1I | GGYRCC | 3 cut(s) | 834, 2012, 4273 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1522, 2955, 4009 |
| AccBSI | CCGCTC | 1 cut(s) | 6 |
| AccI | GTMKAC | 6 cut(s) | 1912, 2124, 2353, 3592, 4626, 4753 |
| AccII | CGCG | 4 cut(s) | 73, 2118, 4458, 4566 |
| AccIII | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| AcoI | YGGCCR | 4 cut(s) | 649, 1546, 4000, 5859 |
| AcuI | CTGAAG | 9 cut(s) | 744, 1826, 2283, 2876, 3454, 4470, 4574, 6249, 6395 |
| AcyI | GRCGYC | 1 cut(s) | 3094 |
| AdeI | CACNNNGTG | 1 cut(s) | 6624 |
| AfaI | GTAC | 9 cut(s) | 659, 679, 836, 887, 1334, 3249, 4923, 5975, 6420 |
| AfeI | AGCGCT | 1 cut(s) | 2783 |
| AflII | CTTAAG | 2 cut(s) | 1196, 4040 |
| AflIII | ACRYGT | 3 cut(s) | 1907, 2116, 4918 |
| AgeI | ACCGGT | 1 cut(s) | 5325 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 94 |
| AhlI | ACTAGT | 2 cut(s) | 2273, 3979 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1202, 1234 |
| AleI | CACNNNNGTG | 1 cut(s) | 2347 |
| Alw21I | GWGCWC | 7 cut(s) | 50, 4372, 4400, 4686, 4762, 6168, 6620 |
| Alw44I | GTGCAC | 2 cut(s) | 4368, 6616 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 785, 2138, 3227, 4712, 5921, 6288, 6454 |
| Ama87I | CYCGRG | 3 cut(s) | 92, 3732, 4800 |
| Aor13HI | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| Aor51HI | AGCGCT | 1 cut(s) | 2783 |
| AoxI | GGCC | 9 cut(s) | 403, 557, 649, 1028, 1192, 1546, 4000, 4407, 5859 |
| ApaLI | GTGCAC | 2 cut(s) | 4368, 6616 |
| AseI | ATTAAT | 3 cut(s) | 452, 846, 4677 |
| AsiGI | ACCGGT | 1 cut(s) | 5325 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2766, 5988 |
| Asp718I | GGTACC | 1 cut(s) | 834 |
| AspA2I | CCTAGG | 2 cut(s) | 3386, 4601 |
| AspLEI | GCGC | 8 cut(s) | 75, 333, 1407, 2385, 2784, 4458, 4460, 6351 |
| AsuC2I | CCSGG | 1 cut(s) | 1496 |
| AsuII | TTCGAA | 1 cut(s) | 3216 |
| AvaI | CYCGRG | 3 cut(s) | 92, 3732, 4800 |
| AvrII | CCTAGG | 2 cut(s) | 3386, 4601 |
| AxyI | CCTNAGG | 1 cut(s) | 1248 |
| BaeGI | GKGCMC | 3 cut(s) | 4372, 6363, 6620 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 818, 851, 3108, 3141, 5372, 5405 |
| BalI | TGGCCA | 3 cut(s) | 651, 1548, 4002 |
| BanI | GGYRCC | 3 cut(s) | 834, 2012, 4273 |
| BanII | GRGCYC | 3 cut(s) | 50, 3901, 4762 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5151, 5183 |
| BauI | CACGAG | 1 cut(s) | 40 |
| BbsI | GAAGAC | 4 cut(s) | 93, 3567, 4162, 6543 |
| Bbv12I | GWGCWC | 7 cut(s) | 50, 4372, 4400, 4686, 4762, 6168, 6620 |
| BceAI | ACGGC | 3 cut(s) | 344, 5846, 6303 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1758, 1792, 3206, 3240, 5382, 5416 |
| BciVI | GTATCC | 3 cut(s) | 682, 1824, 2366 |
| BclI | TGATCA | 2 cut(s) | 1632, 4693 |
| BcnI | CCSGG | 1 cut(s) | 1496 |
| BcuI | ACTAGT | 2 cut(s) | 2273, 3979 |
| BfmI | CTRYAG | 5 cut(s) | 713, 4704, 5157, 6298, 6446 |
| BfoI | RGCGCY | 3 cut(s) | 334, 2785, 6352 |
| BfrI | CTTAAG | 2 cut(s) | 1196, 4040 |
| BfuAI | ACCTGC | 2 cut(s) | 4993, 5302 |
| BfuI | GTATCC | 3 cut(s) | 682, 1824, 2366 |
| BglII | AGATCT | 5 cut(s) | 376, 706, 1580, 1651, 5035 |
| BlnI | CCTAGG | 2 cut(s) | 3386, 4601 |
| BlpI | GCTNAGC | 1 cut(s) | 2880 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 3 cut(s) | 92, 3732, 4800 |
| BmiI | GGNNCC | 9 cut(s) | 29, 238, 836, 1187, 1420, 2014, 2809, 2810, 4275 |
| BmrI | ACTGGG | 1 cut(s) | 5404 |
| BmuI | ACTGGG | 1 cut(s) | 5404 |
| BpiI | GAAGAC | 4 cut(s) | 93, 3567, 4162, 6543 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 6420, 6452 |
| BpmI | CTGGAG | 5 cut(s) | 2439, 2457, 4378, 5130, 5591 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3900, 4335 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2880 |
| Bpu14I | TTCGAA | 1 cut(s) | 3216 |
| BpuEI | CTTGAG | 7 cut(s) | 546, 713, 2513, 2590, 4891, 5721, 6134 |
| BpuMI | CCSGG | 1 cut(s) | 1496 |
| Bsa29I | ATCGAT | 2 cut(s) | 4890, 5392 |
| BsaAI | YACGTR | 1 cut(s) | 4991 |
| BsaBI | GATNNNNATC | 4 cut(s) | 381, 1170, 1650, 5221 |
| BsaHI | GRCGYC | 1 cut(s) | 3094 |
| BsaI | GGTCTC | 3 cut(s) | 3271, 3592, 6297 |
| BsaJI | CCNNGG | 8 cut(s) | 1180, 1189, 3386, 4121, 4601, 4822, 5834, 6065 |
| BsaWI | WCCGGW | 6 cut(s) | 30, 1390, 2539, 5237, 5325, 5701 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 4351, 4381, 5219, 5249 |
| Bse118I | RCCGGY | 2 cut(s) | 5325, 6515 |
| Bse21I | CCTNAGG | 1 cut(s) | 1248 |
| Bse3DI | GCAATG | 6 cut(s) | 1815, 2742, 3366, 5645, 5763, 6298 |
| Bse8I | GATNNNNATC | 4 cut(s) | 381, 1170, 1650, 5221 |
| BseAI | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| BseCI | ATCGAT | 2 cut(s) | 4890, 5392 |
| BseDI | CCNNGG | 8 cut(s) | 1180, 1189, 3386, 4121, 4601, 4822, 5834, 6065 |
| BseJI | GATNNNNATC | 4 cut(s) | 381, 1170, 1650, 5221 |
| BseMI | GCAATG | 6 cut(s) | 1815, 2742, 3366, 5645, 5763, 6298 |
| BsePI | GCGCGC | 1 cut(s) | 4456 |
| BseRI | GAGGAG | 1 cut(s) | 712 |
| BseSI | GKGCMC | 3 cut(s) | 4372, 6363, 6620 |
| BseX3I | CGGCCG | 1 cut(s) | 5859 |
| BseYI | CCCAGC | 1 cut(s) | 6338 |
| BsgI | GTGCAG | 5 cut(s) | 1035, 1858, 3096, 5274, 6471 |
| Bsh1236I | CGCG | 4 cut(s) | 73, 2118, 4458, 4566 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2670, 5862 |
| BshFI | GGCC | 9 cut(s) | 405, 559, 651, 1030, 1194, 1548, 4002, 4409, 5861 |
| BshNI | GGYRCC | 3 cut(s) | 834, 2012, 4273 |
| BshTI | ACCGGT | 1 cut(s) | 5325 |
| BshVI | ATCGAT | 2 cut(s) | 4890, 5392 |
| BsiEI | CGRYCG | 2 cut(s) | 2670, 5862 |
| BsiHKAI | GWGCWC | 7 cut(s) | 50, 4372, 4400, 4686, 4762, 6168, 6620 |
| BsiHKCI | CYCGRG | 3 cut(s) | 92, 3732, 4800 |
| BsiSI | CCGG | 9 cut(s) | 19, 31, 1391, 1496, 2540, 5238, 5326, 5702, 6516 |
| BslFI | GGGAC | 3 cut(s) | 41, 2821, 3368 |
| BsmBI | CGTCTC | 2 cut(s) | 319, 6440 |
| BsmFI | GGGAC | 3 cut(s) | 41, 2821, 3368 |
| BsmI | GAATGC | 8 cut(s) | 1562, 1781, 2461, 2927, 4727, 4785, 5297, 5659 |
| BsnI | GGCC | 9 cut(s) | 405, 559, 651, 1030, 1194, 1548, 4002, 4409, 5861 |
| Bso31I | GGTCTC | 3 cut(s) | 3271, 3592, 6297 |
| BsoBI | CYCGRG | 3 cut(s) | 92, 3732, 4800 |
| Bsp119I | TTCGAA | 1 cut(s) | 3216 |
| Bsp1286I | GDGCHC | 9 cut(s) | 50, 3901, 4372, 4400, 4686, 4762, 6168, 6363, 6620 |
| Bsp13I | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| Bsp1407I | TGTACA | 2 cut(s) | 1332, 6418 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2880 |
| BspANI | GGCC | 9 cut(s) | 405, 559, 651, 1030, 1194, 1548, 4002, 4409, 5861 |
| BspDI | ATCGAT | 2 cut(s) | 4890, 5392 |
| BspEI | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| BspFNI | CGCG | 4 cut(s) | 73, 2118, 4458, 4566 |
| BspHI | TCATGA | 3 cut(s) | 3937, 5422, 5457 |
| BspLI | GGNNCC | 9 cut(s) | 29, 238, 836, 1187, 1420, 2014, 2809, 2810, 4275 |
| BspMAI | CTGCAG | 1 cut(s) | 717 |
| BspMI | ACCTGC | 2 cut(s) | 4993, 5302 |
| BspQI | GCTCTTC | 1 cut(s) | 5172 |
| BspT104I | TTCGAA | 1 cut(s) | 3216 |
| BspT107I | GGYRCC | 3 cut(s) | 834, 2012, 4273 |
| BspTI | CTTAAG | 2 cut(s) | 1196, 4040 |
| BspTNI | GGTCTC | 3 cut(s) | 3271, 3592, 6297 |
| BsrBI | CCGCTC | 1 cut(s) | 6 |
| BsrDI | GCAATG | 6 cut(s) | 1815, 2742, 3366, 5645, 5763, 6298 |
| BsrFI | RCCGGY | 2 cut(s) | 5325, 6515 |
| BsrGI | TGTACA | 2 cut(s) | 1332, 6418 |
| BssAI | RCCGGY | 2 cut(s) | 5325, 6515 |
| BssECI | CCNNGG | 8 cut(s) | 1180, 1189, 3386, 4121, 4601, 4822, 5834, 6065 |
| BssHII | GCGCGC | 1 cut(s) | 4456 |
| BssNAI | GTATAC | 2 cut(s) | 2354, 4754 |
| BssNI | GRCGYC | 1 cut(s) | 3094 |
| BssSI | CACGAG | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 4 cut(s) | 1180, 3386, 4601, 4822 |
| Bst1107I | GTATAC | 2 cut(s) | 2354, 4754 |
| Bst2BI | CACGAG | 1 cut(s) | 40 |
| Bst6I | CTCTTC | 4 cut(s) | 1715, 4149, 4190, 5172 |
| BstACI | GRCGYC | 1 cut(s) | 3094 |
| BstAFI | CTTAAG | 2 cut(s) | 1196, 4040 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 3845, 5665, 5892, 6288 |
| BstAUI | TGTACA | 2 cut(s) | 1332, 6418 |
| BstBAI | YACGTR | 1 cut(s) | 4991 |
| BstBI | TTCGAA | 1 cut(s) | 3216 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4175 |
| BstFNI | CGCG | 4 cut(s) | 73, 2118, 4458, 4566 |
| BstH2I | RGCGCY | 3 cut(s) | 334, 2785, 6352 |
| BstHHI | GCGC | 8 cut(s) | 75, 333, 1407, 2385, 2784, 4458, 4460, 6351 |
| BstMCI | CGRYCG | 2 cut(s) | 2670, 5862 |
| BstNSI | RCATGY | 8 cut(s) | 722, 1911, 3165, 4858, 4922, 5725, 6208, 6212 |
| BstSFI | CTRYAG | 5 cut(s) | 713, 4704, 5157, 6298, 6446 |
| BstSLI | GKGCMC | 3 cut(s) | 4372, 6363, 6620 |
| BstUI | CGCG | 4 cut(s) | 73, 2118, 4458, 4566 |
| BstV2I | GAAGAC | 4 cut(s) | 93, 3567, 4162, 6543 |
| BstX2I | RGATCY | 9 cut(s) | 376, 706, 1580, 1651, 2531, 2662, 3284, 5035, 6451 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 401 |
| BstYI | RGATCY | 9 cut(s) | 376, 706, 1580, 1651, 2531, 2662, 3284, 5035, 6451 |
| BstZ17I | GTATAC | 2 cut(s) | 2354, 4754 |
| BstZI | CGGCCG | 1 cut(s) | 5859 |
| Bsu15I | ATCGAT | 2 cut(s) | 4890, 5392 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1248 |
| BsuI | GTATCC | 3 cut(s) | 682, 1824, 2366 |
| BsuRI | GGCC | 9 cut(s) | 405, 559, 651, 1030, 1194, 1548, 4002, 4409, 5861 |
| BsuTUI | ATCGAT | 2 cut(s) | 4890, 5392 |
| BtgZI | GCGATG | 2 cut(s) | 658, 4402 |
| BtsI | GCAGTG | 2 cut(s) | 1875, 3084 |
| BveI | ACCTGC | 2 cut(s) | 4993, 5302 |
| CaiI | CAGNNNCTG | 7 cut(s) | 785, 2138, 3227, 4712, 5921, 6288, 6454 |
| CciI | TCATGA | 3 cut(s) | 3937, 5422, 5457 |
| CfoI | GCGC | 8 cut(s) | 75, 333, 1407, 2385, 2784, 4458, 4460, 6351 |
| Cfr10I | RCCGGY | 2 cut(s) | 5325, 6515 |
| ClaI | ATCGAT | 2 cut(s) | 4890, 5392 |
| CseI | GACGC | 6 cut(s) | 196, 2590, 3083, 4577, 6422, 6548 |
| Csp6I | GTAC | 9 cut(s) | 658, 678, 835, 886, 1333, 3248, 4922, 5974, 6419 |
| CspAI | ACCGGT | 1 cut(s) | 5325 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1396, 1431, 1837, 1872 |
| CviQI | GTAC | 9 cut(s) | 658, 678, 835, 886, 1333, 3248, 4922, 5974, 6419 |
| DraIII | CACNNNGTG | 1 cut(s) | 6624 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2132 |
| DriI | GACNNNNNGTC | 1 cut(s) | 94 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2132 |
| EaeI | YGGCCR | 4 cut(s) | 649, 1546, 4000, 5859 |
| EagI | CGGCCG | 1 cut(s) | 5859 |
| Eam1104I | CTCTTC | 4 cut(s) | 1715, 4149, 4190, 5172 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 94 |
| EarI | CTCTTC | 4 cut(s) | 1715, 4149, 4190, 5172 |
| EciI | GGCGGA | 1 cut(s) | 3065 |
| Ecl136II | GAGCTC | 2 cut(s) | 48, 4760 |
| EclXI | CGGCCG | 1 cut(s) | 5859 |
| Eco130I | CCWWGG | 4 cut(s) | 1180, 3386, 4601, 4822 |
| Eco147I | AGGCCT | 1 cut(s) | 559 |
| Eco24I | GRGCYC | 3 cut(s) | 50, 3901, 4762 |
| Eco31I | GGTCTC | 3 cut(s) | 3271, 3592, 6297 |
| Eco32I | GATATC | 5 cut(s) | 355, 3466, 4969, 5016, 5746 |
| Eco47III | AGCGCT | 1 cut(s) | 2783 |
| Eco52I | CGGCCG | 1 cut(s) | 5859 |
| Eco53kI | GAGCTC | 2 cut(s) | 48, 4760 |
| Eco57I | CTGAAG | 9 cut(s) | 744, 1826, 2283, 2876, 3454, 4470, 4574, 6249, 6395 |
| Eco81I | CCTNAGG | 1 cut(s) | 1248 |
| Eco88I | CYCGRG | 3 cut(s) | 92, 3732, 4800 |
| EcoICRI | GAGCTC | 2 cut(s) | 48, 4760 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4175 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1192, 2808, 4819 |
| EcoRI | GAATTC | 3 cut(s) | 2766, 3919, 5697 |
| EcoRV | GATATC | 5 cut(s) | 355, 3466, 4969, 5016, 5746 |
| EcoT14I | CCWWGG | 4 cut(s) | 1180, 3386, 4601, 4822 |
| EcoT22I | ATGCAT | 3 cut(s) | 4959, 5727, 6210 |
| EcoT38I | GRGCYC | 3 cut(s) | 50, 3901, 4762 |
| ErhI | CCWWGG | 4 cut(s) | 1180, 3386, 4601, 4822 |
| Esp3I | CGTCTC | 2 cut(s) | 319, 6440 |
| FaqI | GGGAC | 3 cut(s) | 41, 2821, 3368 |
| FauI | CCCGC | 3 cut(s) | 969, 3361, 6362 |
| FauNDI | CATATG | 2 cut(s) | 972, 6021 |
| FbaI | TGATCA | 2 cut(s) | 1632, 4693 |
| FblI | GTMKAC | 6 cut(s) | 1912, 2124, 2353, 3592, 4626, 4753 |
| FriOI | GRGCYC | 3 cut(s) | 50, 3901, 4762 |
| FspI | TGCGCA | 2 cut(s) | 1406, 2384 |
| GlaI | GCGC | 8 cut(s) | 74, 332, 1406, 2384, 2783, 4457, 4459, 6350 |
| GsaI | CCCAGC | 1 cut(s) | 6342 |
| GsuI | CTGGAG | 5 cut(s) | 2439, 2457, 4378, 5130, 5591 |
| HaeII | RGCGCY | 3 cut(s) | 334, 2785, 6352 |
| HaeIII | GGCC | 9 cut(s) | 405, 559, 651, 1030, 1194, 1548, 4002, 4409, 5861 |
| HapII | CCGG | 9 cut(s) | 19, 31, 1391, 1496, 2540, 5238, 5326, 5702, 6516 |
| HgaI | GACGC | 6 cut(s) | 196, 2590, 3083, 4577, 6422, 6548 |
| HhaI | GCGC | 8 cut(s) | 75, 333, 1407, 2385, 2784, 4458, 4460, 6351 |
| Hin1I | GRCGYC | 1 cut(s) | 3094 |
| Hin6I | GCGC | 8 cut(s) | 73, 331, 1405, 2383, 2782, 4456, 4458, 6349 |
| HinP1I | GCGC | 8 cut(s) | 73, 331, 1405, 2383, 2782, 4456, 4458, 6349 |
| HincII | GTYRAC | 5 cut(s) | 823, 2008, 3277, 4135, 4945 |
| HindII | GTYRAC | 5 cut(s) | 823, 2008, 3277, 4135, 4945 |
| HindIII | AAGCTT | 5 cut(s) | 519, 1739, 4220, 5577, 5987 |
| HpaII | CCGG | 9 cut(s) | 19, 31, 1391, 1496, 2540, 5238, 5326, 5702, 6516 |
| Hpy99I | CGWCG | 5 cut(s) | 86, 212, 488, 4571, 6173 |
| HpyCH4IV | ACGT | 9 cut(s) | 1162, 2083, 2376, 2842, 3142, 3316, 4632, 4990, 6171 |
| HpySE526I | ACGT | 9 cut(s) | 1162, 2083, 2376, 2842, 3142, 3316, 4632, 4990, 6171 |
| Hsp92I | GRCGYC | 1 cut(s) | 3094 |
| HspAI | GCGC | 8 cut(s) | 73, 331, 1405, 2383, 2782, 4456, 4458, 6349 |
| KflI | GGGWCCC | 1 cut(s) | 2808 |
| Kpn2I | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| KpnI | GGTACC | 1 cut(s) | 838 |
| KroI | GCCGGC | 1 cut(s) | 6515 |
| KroNI | GCCGGC | 1 cut(s) | 6517 |
| Ksp22I | TGATCA | 2 cut(s) | 1632, 4693 |
| LguI | GCTCTTC | 1 cut(s) | 5172 |
| LmnI | GCTCC | 9 cut(s) | 45, 53, 242, 863, 1185, 2438, 5111, 5134, 6229 |
| MaeII | ACGT | 9 cut(s) | 1162, 2083, 2376, 2842, 3142, 3316, 4632, 4990, 6171 |
| MbiI | CCGCTC | 1 cut(s) | 6 |
| MfeI | CAATTG | 3 cut(s) | 1854, 2703, 3603 |
| MflI | RGATCY | 9 cut(s) | 376, 706, 1580, 1651, 2531, 2662, 3284, 5035, 6451 |
| MhlI | GDGCHC | 9 cut(s) | 50, 3901, 4372, 4400, 4686, 4762, 6168, 6363, 6620 |
| MlsI | TGGCCA | 3 cut(s) | 651, 1548, 4002 |
| MluI | ACGCGT | 1 cut(s) | 2116 |
| MluNI | TGGCCA | 3 cut(s) | 651, 1548, 4002 |
| MmeI | TCCRAC | 4 cut(s) | 841, 1063, 1616, 4615 |
| Mox20I | TGGCCA | 3 cut(s) | 651, 1548, 4002 |
| Mph1103I | ATGCAT | 3 cut(s) | 4959, 5727, 6210 |
| MroI | TCCGGA | 3 cut(s) | 1390, 2539, 5237 |
| MroNI | GCCGGC | 1 cut(s) | 6515 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2766, 5988 |
| MscI | TGGCCA | 3 cut(s) | 651, 1548, 4002 |
| Msp20I | TGGCCA | 3 cut(s) | 651, 1548, 4002 |
| MspA1I | CMGCKG | 7 cut(s) | 1616, 2955, 3356, 4594, 4964, 5918, 6545 |
| MspCI | CTTAAG | 2 cut(s) | 1196, 4040 |
| MspI | CCGG | 9 cut(s) | 19, 31, 1391, 1496, 2540, 5238, 5326, 5702, 6516 |
| MunI | CAATTG | 3 cut(s) | 1854, 2703, 3603 |
| Mva1269I | GAATGC | 8 cut(s) | 1562, 1781, 2461, 2927, 4727, 4785, 5297, 5659 |
| MvnI | CGCG | 4 cut(s) | 73, 2118, 4458, 4566 |
| NaeI | GCCGGC | 1 cut(s) | 6517 |
| NciI | CCSGG | 1 cut(s) | 1496 |
| NdeI | CATATG | 2 cut(s) | 972, 6021 |
| NgoMIV | GCCGGC | 1 cut(s) | 6515 |
| NlaIV | GGNNCC | 9 cut(s) | 29, 238, 836, 1187, 1420, 2014, 2809, 2810, 4275 |
| NmeAIII | GCCGAG | 2 cut(s) | 120, 2440 |
| NmuCI | GTSAC | 9 cut(s) | 467, 922, 1000, 1094, 2134, 3343, 3727, 4536, 5125 |
| NsbI | TGCGCA | 2 cut(s) | 1406, 2384 |
| NsiI | ATGCAT | 3 cut(s) | 4959, 5727, 6210 |
| NspI | RCATGY | 8 cut(s) | 722, 1911, 3165, 4858, 4922, 5725, 6208, 6212 |
| NspV | TTCGAA | 1 cut(s) | 3216 |
| OliI | CACNNNNGTG | 1 cut(s) | 2347 |
| PaeI | GCATGC | 3 cut(s) | 722, 4858, 5725 |
| PaeR7I | CTCGAG | 2 cut(s) | 92, 4800 |
| PagI | TCATGA | 3 cut(s) | 3937, 5422, 5457 |
| PaqCI | CACCTGC | 2 cut(s) | 4993, 5302 |
| PauI | GCGCGC | 1 cut(s) | 4456 |
| PceI | AGGCCT | 1 cut(s) | 559 |
| PciI | ACATGT | 2 cut(s) | 1907, 4918 |
| PciSI | GCTCTTC | 1 cut(s) | 5172 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 90, 2203 |
| PctI | GAATGC | 8 cut(s) | 1562, 1781, 2461, 2927, 4727, 4785, 5297, 5659 |
| PdiI | GCCGGC | 1 cut(s) | 6517 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2766, 5988 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1522, 2955, 4009 |
| PfoI | TCCNGGA | 4 cut(s) | 1035, 1897, 2295, 2527 |
| PinAI | ACCGGT | 1 cut(s) | 5325 |
| Ple19I | CGATCG | 1 cut(s) | 2670 |
| Ppu21I | YACGTR | 1 cut(s) | 4991 |
| PpuMI | RGGWCCY | 2 cut(s) | 2808, 4819 |
| PscI | ACATGT | 2 cut(s) | 1907, 4918 |
| PshBI | ATTAAT | 3 cut(s) | 452, 846, 4677 |
| PsiI | TTATAA | 1 cut(s) | 3309 |
| Psp124BI | GAGCTC | 2 cut(s) | 50, 4762 |
| Psp5II | RGGWCCY | 2 cut(s) | 2808, 4819 |
| PspFI | CCCAGC | 1 cut(s) | 6338 |
| PspN4I | GGNNCC | 9 cut(s) | 29, 238, 836, 1187, 1420, 2014, 2809, 2810, 4275 |
| PspPPI | RGGWCCY | 2 cut(s) | 2808, 4819 |
| PspXI | VCTCGAGB | 1 cut(s) | 92 |
| PstI | CTGCAG | 1 cut(s) | 717 |
| PstNI | CAGNNNCTG | 7 cut(s) | 785, 2138, 3227, 4712, 5921, 6288, 6454 |
| PsuI | RGATCY | 9 cut(s) | 376, 706, 1580, 1651, 2531, 2662, 3284, 5035, 6451 |
| PteI | GCGCGC | 1 cut(s) | 4456 |
| PvuI | CGATCG | 1 cut(s) | 2670 |
| PvuII | CAGCTG | 5 cut(s) | 1616, 4594, 4964, 5918, 6545 |
| RsaI | GTAC | 9 cut(s) | 659, 679, 836, 887, 1334, 3249, 4923, 5975, 6420 |
| RsaNI | GTAC | 9 cut(s) | 658, 678, 835, 886, 1333, 3248, 4922, 5974, 6419 |
| SacI | GAGCTC | 2 cut(s) | 50, 4762 |
| SapI | GCTCTTC | 1 cut(s) | 5172 |
| SduI | GDGCHC | 9 cut(s) | 50, 3901, 4372, 4400, 4686, 4762, 6168, 6363, 6620 |
| SfcI | CTRYAG | 5 cut(s) | 713, 4704, 5157, 6298, 6446 |
| Sfr274I | CTCGAG | 2 cut(s) | 92, 4800 |
| SfuI | TTCGAA | 1 cut(s) | 3216 |
| SgrAI | CRCCGGYG | 1 cut(s) | 5325 |
| SlaI | CTCGAG | 2 cut(s) | 92, 4800 |
| SpeI | ACTAGT | 2 cut(s) | 2273, 3979 |
| SphI | GCATGC | 3 cut(s) | 722, 4858, 5725 |
| SseBI | AGGCCT | 1 cut(s) | 559 |
| SspI | AATATT | 3 cut(s) | 1947, 3213, 4464 |
| SstI | GAGCTC | 2 cut(s) | 50, 4762 |
| StuI | AGGCCT | 1 cut(s) | 559 |
| StyI | CCWWGG | 4 cut(s) | 1180, 3386, 4601, 4822 |
| TaiI | ACGT | 9 cut(s) | 1165, 2086, 2379, 2845, 3145, 3319, 4635, 4993, 6174 |
| TaqII | GACCGA | 2 cut(s) | 3610, 5960 |
| TatI | WGTACW | 3 cut(s) | 885, 1332, 6418 |
| TauI | GCSGC | 3 cut(s) | 9, 4229, 6110 |
| TseFI | GTSAC | 9 cut(s) | 467, 922, 1000, 1094, 2134, 3343, 3727, 4536, 5125 |
| Tsp45I | GTSAC | 9 cut(s) | 467, 922, 1000, 1094, 2134, 3343, 3727, 4536, 5125 |
| TspGWI | ACGGA | 4 cut(s) | 840, 3265, 4779, 5291 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1522, 2955, 4009 |
| Vha464I | CTTAAG | 2 cut(s) | 1196, 4040 |
| VneI | GTGCAC | 2 cut(s) | 4368, 6616 |
| VspI | ATTAAT | 3 cut(s) | 452, 846, 4677 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4175 |
| XceI | RCATGY | 8 cut(s) | 722, 1911, 3165, 4858, 4922, 5725, 6208, 6212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5652 |
| XhoI | CTCGAG | 2 cut(s) | 92, 4800 |
| XmaJI | CCTAGG | 2 cut(s) | 3386, 4601 |
| XmiI | GTMKAC | 6 cut(s) | 1912, 2124, 2353, 3592, 4626, 4753 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2766, 5988 |
| Zsp2I | ATGCAT | 3 cut(s) | 4959, 5727, 6210 |