Rroxscaffold_7G00159400

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000325
Physical Location & Seq
Forward (+)
2618264 .. 2621522
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159400.1

Sequence Viewer

Length: 1404 bp
ATGCTTGAAAAGTATGATCTAATGGAGAATGATTGGTTAAAGAGATTATTTAATCTTAAGGAGAAATGGGCATTAGTCTATGGCCGAGAAACCTTTTCTGAAGATATTACTACAACCCAACGTAGTGAAAGCATGAATGGTTCATTGAAGAAATATGTCAATTATCGATATCACTTGCTGCAATTTTTTCATCATTTTGAAAGGTTGGTTGAAGATCGTATTTACAAAGAGTTGAGGGCTGATTTTAAGGCAAGTCAAAATTTCCCTGCAATTTCATTTCCAGTAAAAATATTAAGGCATGCAGCAAAAGTCTACACCCCAGCAGTTTTTAAAAAGTTTCAATGTGAGCTATGTAAAGCTCATGATTGTGCATTGAGCTTTATTGATGAGGTTGGAACAGTGAGCAGTTATCATATCGTCCCCCATGGGAAGTCTTGGCACCATAGAGTTACATTTAATTCAACAAGTGATATTGTTCAGTGCAGTTGTAAGAAGTTCCAGTTTGCAGGAATCTTGTGTGCTCATGCCTTGAAGGTTCTTTCGACAAGAAATATTAAGAAAATTCCATCTCAATACATCTTGAAGAGGTGGACAAAATCTGTTAAGGAGGGTAAGAGGCCATATTTATCTTGCCAAAATACAAGTGAAATAGACCCAAAGGCAGAAATTGTGAGAAGTTATCGAAATATTTGTCGATTGAATACTCAAATAGCAACAAGAGCTACAACTAAAAGAGCCTATGAACTTGTTCTATCTAGATTGGACAGCATACGAGAAGATGTGGATACATGTTTGAAAGAAGAAGCCGAGGAAAAGTCTACTCAACTAATTTCACCTACCACCAACAATGCATCAGAGCTTAATGAGGTGGTGTGTGTTGATGATCAAGTTAAAGGGATTAAAGTTAAAGAGAAACTTAAAGGTATTGGTTGTTCAACTAGGCCTAAAAATGCTCTAGAGAAGCTAACCATGGCAAAGAGGAGAAGACTTGAAAATAGAGACATGAACTCTTCATCTGTTGCTTCCAAAACTGCATCTACAATGCAATGTCCTTCTATGACGCAAAGTGTTTCAGCGACACAACATGCTTCTTCGACACAGCCTCTTCTACCTCTTTCTATGCAAAGGGTTTCTAATGTGCAACTTACCTTGCCTCTATCACAACATGTTATGCCTTCAGCACCCTTATTGCAACTAGAACCTAATTGTGGTAAGTTAACAATGGACATGCCCATTAAAGAGAGAGAATTGGCTCAGCCTCCATTTATGCAGAGACAATCCAAAGTAGCAGCAAGCATGGAGAATGGCCAGATGGTCGAGGCTGCAATTTCGCAAGCAGAATTGAAGCTTAGAGCATGTTCCACTAATTTTCTAGTTGAACAAGTGTTGTTTGTTCCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

467

Amino Acids

53.32

Weight (kDa)

9.34

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 160 - 184 5.3e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 438
AccI GTMKAC 2 cut(s) 312, 818
AcoI YGGCCR 2 cut(s) 82, 1306
AcsI RAATTY 2 cut(s) 259, 561
AcuI CTGAAG 2 cut(s) 120, 1161
AfiI CCNNNNNNNGG 1 cut(s) 1208
AflII CTTAAG 1 cut(s) 56
AflIII ACRYGT 2 cut(s) 788, 1165
AluBI AGCT 7 cut(s) 349, 359, 378, 722, 859, 964, 1348
AluI AGCT 7 cut(s) 349, 359, 378, 722, 859, 964, 1348
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 993, 1267
AoxI GGCC 4 cut(s) 82, 617, 941, 1306
ApeKI GCWGC 4 cut(s) 178, 302, 1289, 1322
ApoI RAATTY 2 cut(s) 259, 561
ArsI GACNNNNNNTTYG 2 cut(s) 676, 708
Asp700I GAANNNNTTC 1 cut(s) 747
AsuHPI GGTGA 1 cut(s) 825
BalI TGGCCA 1 cut(s) 1308
BanI GGYRCC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 991
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 4 cut(s) 165, 314, 1301, 1309
BccI CCATC 2 cut(s) 574, 1306
BciVI GTATCC 1 cut(s) 778
BclI TGATCA 1 cut(s) 883
BcoDI GTCTC 2 cut(s) 993, 1267
BfaI CTAG 5 cut(s) 756, 939, 956, 1196, 1373
BfrI CTTAAG 1 cut(s) 56
BfuI GTATCC 1 cut(s) 778
BisI GCNGC 4 cut(s) 179, 303, 1290, 1323
BlpI GCTNAGC 1 cut(s) 1254
BlsI GCNGC 4 cut(s) 180, 304, 1291, 1324
BmiI GGNNCC 1 cut(s) 440
BmsI GCATC 2 cut(s) 860, 1043
BpiI GAAGAC 1 cut(s) 991
Bpu1102I GCTNAGC 1 cut(s) 1254
Bsa29I ATCGAT 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 424, 807, 969
Bsc4I CCNNNNNNNGG 1 cut(s) 1208
Bse1I ACTGG 2 cut(s) 281, 499
Bse3DI GCAATG 1 cut(s) 1052
BseCI ATCGAT 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 424, 807, 969
BseLI CCNNNNNNNGG 1 cut(s) 1208
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 1 cut(s) 1268
BseNI ACTGG 2 cut(s) 281, 499
BseRI GAGGAG 1 cut(s) 994
BseXI GCAGC 4 cut(s) 165, 314, 1301, 1309
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 502
BshFI GGCC 4 cut(s) 84, 619, 943, 1308
BshNI GGYRCC 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 523
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 1208
BsmAI GTCTC 2 cut(s) 993, 1267
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 4 cut(s) 84, 619, 943, 1308
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 3 cut(s) 16, 214, 883
Bsp1720I GCTNAGC 1 cut(s) 1254
Bsp19I CCATGG 2 cut(s) 424, 969
BspANI GGCC 4 cut(s) 84, 619, 943, 1308
BspCNI CTCAG 1 cut(s) 1267
BspDI ATCGAT 1 cut(s) 166
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 438
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 1052
BsrI ACTGG 2 cut(s) 281, 499
BssECI CCNNGG 3 cut(s) 424, 807, 969
BssMI GATC 3 cut(s) 16, 214, 883
BssT1I CCWWGG 2 cut(s) 424, 969
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 3 cut(s) 578, 1015, 1110
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 300, 1294, 1335
BstDEI CTNAG 2 cut(s) 1254, 1349
BstDSI CCRYGG 2 cut(s) 424, 969
BstKTI GATC 3 cut(s) 19, 217, 886
BstMAI GTCTC 2 cut(s) 993, 1267
BstMBI GATC 3 cut(s) 16, 214, 883
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstNSI RCATGY 6 cut(s) 302, 792, 1088, 1169, 1231, 1359
BstV1I GCAGC 4 cut(s) 165, 314, 1301, 1309
BstV2I GAAGAC 1 cut(s) 991
Bsu15I ATCGAT 1 cut(s) 166
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 4 cut(s) 84, 619, 943, 1308
BsuTUI ATCGAT 1 cut(s) 166
BtgI CCRYGG 2 cut(s) 424, 969
BtsIMutI CAGTG 2 cut(s) 405, 485
Cac8I GCNNGC 3 cut(s) 300, 1294, 1335
CciI TCATGA 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 166
CseI GACGC 1 cut(s) 1069
DdeI CTNAG 2 cut(s) 1254, 1349
DpnI GATC 3 cut(s) 18, 216, 885
DpnII GATC 3 cut(s) 16, 214, 883
DraI TTTAAA 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 82, 1306
Eam1104I CTCTTC 3 cut(s) 578, 1015, 1110
EarI CTCTTC 3 cut(s) 578, 1015, 1110
Eco130I CCWWGG 2 cut(s) 424, 969
Eco147I AGGCCT 1 cut(s) 943
Eco32I GATATC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 120, 1161
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 424, 969
EcoT22I ATGCAT 1 cut(s) 853
ErhI CCWWGG 2 cut(s) 424, 969
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 1 cut(s) 404
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 2 cut(s) 312, 818
Fnu4HI GCNGC 4 cut(s) 179, 303, 1290, 1323
Fsp4HI GCNGC 4 cut(s) 179, 303, 1290, 1323
FspBI CTAG 5 cut(s) 756, 939, 956, 1196, 1373
GluI GCNGC 4 cut(s) 179, 303, 1290, 1323
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 4 cut(s) 84, 619, 943, 1308
HgaI GACGC 1 cut(s) 1069
HincII GTYRAC 1 cut(s) 1218
HindII GTYRAC 1 cut(s) 1218
HindIII AAGCTT 1 cut(s) 1346
HinfI GANTC 1 cut(s) 510
HpaI GTTAAC 1 cut(s) 1218
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 4 cut(s) 313, 591, 819, 1218
Hpy188I TCNGA 2 cut(s) 100, 856
Hpy188III TCNNGA 4 cut(s) 362, 580, 756, 956
Hpy8I GTNNAC 4 cut(s) 313, 591, 819, 1218
HpyAV CCTTC 3 cut(s) 526, 1062, 1185
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
HpyF3I CTNAG 2 cut(s) 1254, 1349
HpySE526I ACGT 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 883
KspAI GTTAAC 1 cut(s) 1218
Kzo9I GATC 3 cut(s) 16, 214, 883
LpnPI CCDG 6 cut(s) 279, 294, 333, 492, 512, 1322
Lsp1109I GCAGC 4 cut(s) 165, 314, 1301, 1309
LweI GCATC 2 cut(s) 860, 1043
MaeI CTAG 5 cut(s) 756, 939, 956, 1196, 1373
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 18, 216, 885
MboI GATC 3 cut(s) 16, 214, 883
MhlI GDGCHC 1 cut(s) 523
MlsI TGGCCA 1 cut(s) 1308
MluNI TGGCCA 1 cut(s) 1308
MmeI TCCRAC 1 cut(s) 373
Mox20I TGGCCA 1 cut(s) 1308
Mph1103I ATGCAT 1 cut(s) 853
MroXI GAANNNNTTC 1 cut(s) 747
MscI TGGCCA 1 cut(s) 1308
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 1308
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 719
NcoI CCATGG 2 cut(s) 424, 969
NdeII GATC 3 cut(s) 16, 214, 883
NlaIV GGNNCC 1 cut(s) 440
NmeAIII GCCGAG 2 cut(s) 110, 832
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 6 cut(s) 302, 792, 1088, 1169, 1231, 1359
PaeI GCATGC 1 cut(s) 302
PagI TCATGA 1 cut(s) 361
PceI AGGCCT 1 cut(s) 943
PciI ACATGT 2 cut(s) 788, 1165
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 4 cut(s) 180, 304, 1291, 1324
PscI ACATGT 2 cut(s) 788, 1165
PspFI CCCAGC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 440
PsrI GAACNNNNNNTAC 2 cut(s) 916, 948
RseI CAYNNNNRTG 1 cut(s) 366
SatI GCNGC 4 cut(s) 179, 303, 1290, 1323
Sau3AI GATC 3 cut(s) 16, 214, 883
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 2 cut(s) 860, 1043
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SphI GCATGC 1 cut(s) 302
SseBI AGGCCT 1 cut(s) 943
SspI AATATT 3 cut(s) 291, 553, 688
SspMI CTAG 5 cut(s) 756, 939, 956, 1196, 1373
StuI AGGCCT 1 cut(s) 943
StyI CCWWGG 2 cut(s) 424, 969
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 124
TaqI TCGA 6 cut(s) 166, 542, 682, 694, 1094, 1317
TfiI GAWTC 1 cut(s) 510
TscAI CASTG 2 cut(s) 405, 485
TseI GCWGC 4 cut(s) 178, 302, 1289, 1322
TspDTI ATGAA 7 cut(s) 132, 149, 179, 264, 756, 1002, 1019
TspRI CASTG 2 cut(s) 405, 485
Vha464I CTTAAG 1 cut(s) 56
XapI RAATTY 2 cut(s) 259, 561
XbaI TCTAGA 2 cut(s) 755, 955
XceI RCATGY 6 cut(s) 302, 792, 1088, 1169, 1231, 1359
XmiI GTMKAC 2 cut(s) 312, 818
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 5 cut(s) 756, 939, 956, 1196, 1373
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.