Prupe.1G227400_v2.0.a1

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000325
Physical Location & Seq
Forward (+)
24069951 .. 24073762
3812 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G227400.1

Sequence Viewer

Length: 549 bp
ATGAAGTTCACGTTTGTTGCGATTTTATGTGTTCATGCAATGAAAGTGCTTGATAAGAAAAATGTGAAAAGGATTCTATCCCAATACATATTGAATCGGTCGAGGAGAGATGCAAAGGCTAAGAGTATCACTAGTTATAATGGATTTGGGATTCATGACAACCCCAAAGAGTCTATGGAAAAGCGTTACAACCATTTATGTCGGAATTTTCGTGAGATTGCAACCTTTGCAGCAAAGCATGAGAAATTAACAGAATATGTTGATCAATGCTCCATTGAGATGCTCAAATGTTTAAAGGAAATAAAGACAAATATTTTTGGTGGAAATCAACATGTTGACAGAGTGGTTGAGCAAACTAATTCTGCTACACCAATCGTAACTGGAGTTAAAAGGAAGGCTACAGTTGGACGCCCACGCAATCAATTGAAGGACCCCCTTGAACGAAAAAGACAAAAAACATCAACAAAAGCTTCTACAAGTCGACAAATAACAATGCAGGAACAAGTACATATTGATGCTTTTTCACAAGACCAAGAATTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

183

Amino Acids

20.95

Weight (kDa)

9.88

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 538
AccI GTMKAC 1 cut(s) 481
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 409
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 3 cut(s) 94, 427, 440
AhlI ACTAGT 1 cut(s) 131
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 430
AvaII GGWCC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 242
BclI TGATCA 1 cut(s) 262
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 432
BmsI GCATC 3 cut(s) 100, 270, 505
BpmI CTGGAG 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 538
Bsp143I GATC 1 cut(s) 262
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 385
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 242
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 506
CviAII CATG 4 cut(s) 35, 155, 239, 332
CviJI RGCY 3 cut(s) 119, 398, 470
CviKI_1 RGCY 3 cut(s) 119, 398, 470
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 430
FaeI CATG 4 cut(s) 38, 158, 242, 335
FatI CATG 4 cut(s) 34, 154, 238, 331
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 402
HgaI GACGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 4 cut(s) 38, 158, 242, 335
HincII GTYRAC 2 cut(s) 337, 482
HindII GTYRAC 2 cut(s) 337, 482
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 4 cut(s) 73, 94, 151, 170
Hpy166II GTNNAC 3 cut(s) 9, 337, 482
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 155, 212
Hpy8I GTNNAC 3 cut(s) 9, 337, 482
HpyAV CCTTC 2 cut(s) 388, 421
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 5 cut(s) 38, 113, 221, 230, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 4 cut(s) 38, 158, 242, 335
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 2 cut(s) 366, 482
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 3 cut(s) 100, 270, 505
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 185, 376
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MfeI CAATTG 1 cut(s) 422
MluCI AATT 5 cut(s) 205, 245, 358, 422, 536
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 182, 385
MnlI CCTC 1 cut(s) 96
MseI TTAA 3 cut(s) 248, 293, 387
MslI CAYNNNNRTG 2 cut(s) 278, 513
MunI CAATTG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 38, 158, 242, 335
NlaIV GGNNCC 1 cut(s) 432
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 154
PciI ACATGT 1 cut(s) 331
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 208
PfeI GAWTC 3 cut(s) 73, 94, 151
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 430
PscI ACATGT 1 cut(s) 331
PsiI TTATAA 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 1 cut(s) 430
PspPPI RGGWCCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 2 cut(s) 278, 513
SalI GTCGAC 1 cut(s) 480
SaqAI TTAA 3 cut(s) 248, 293, 387
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 179
SetI ASST 3 cut(s) 14, 227, 472
SfaNI GCATC 3 cut(s) 100, 270, 505
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 278, 513
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 5 cut(s) 205, 245, 358, 422, 536
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 101, 481
TaqII GACCGA 1 cut(s) 87
TasI AATT 5 cut(s) 205, 245, 358, 422, 536
TatI WGTACW 1 cut(s) 505
TfiI GAWTC 3 cut(s) 73, 94, 151
Tru1I TTAA 3 cut(s) 248, 293, 387
Tru9I TTAA 3 cut(s) 248, 293, 387
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 17, 23, 56, 143
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 205
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.