Rorug02G0344200

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000325
Physical Location & Seq
Reverse (-)
42971815 .. 42972394
580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0344200.1

Sequence Viewer

Length: 576 bp
ATGCGCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTCAAACAGGTAGTCCGCGGTGGCGTTAGAACAAACAATGAACCCTCCCAGGCCCACCAGCCACAGCCGCCGCAGCGGATCTATTATGCCTCATCATCATCACTTCCTCCAACGGAGGGCGCCGATCAAGTCGTGATACCGTATTCGGATTCTGACACGTGTGAGGTATGTAAGATGGAGATGGACGATTGCCTTGGCTGTGGCTTGTTCCCGCCAAGCGAGCAATACAAAGGGAAAGGGAAGAAGATGCAGACTAGCGAGTACAGGGGAGTGCGGCAGAGACCAGGGGGAAAATGGGCCGCGGAGATTCGGGACCCGCGTCGCGCGGTTCGGGTTTGGCTCGGGACGTTTCAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCCCTCGAGTTTCGTGGAGCTGACAGAGCTAAGCTAAACTTCCCCCCATCCTCGGACACTGGTGGTACTACCAGTAGAGCATTGACTGATGAGACCAAAAGTCAAAACAAGTCCAGTAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

191

Amino Acids

20.94

Weight (kDa)

8.88

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 107 - 156 2e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 5 cut(s) 78, 362, 379, 384, 386
AclWI GGATC 1 cut(s) 146
AcvI CACGTG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 2 cut(s) 323, 517
AfiI CCNNNNNNNGG 3 cut(s) 67, 176, 502
AflIII ACRYGT 2 cut(s) 216, 218
AhdI GACNNNNNGTC 1 cut(s) 549
AjnI CCWGG 3 cut(s) 108, 343, 431
AluBI AGCT 3 cut(s) 470, 479, 484
AluI AGCT 3 cut(s) 470, 479, 484
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 58, 334, 536
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 2 cut(s) 401, 455
AoxI GGCC 3 cut(s) 111, 357, 450
ApeKI GCWGC 2 cut(s) 133, 428
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspLEI GCGC 3 cut(s) 6, 182, 386
AspS9I GGNCC 4 cut(s) 112, 357, 373, 451
AvaI CYCGRG 2 cut(s) 401, 455
AvaII GGWCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 145, 440
BccI CCATC 3 cut(s) 229, 235, 505
BceAI ACGGC 2 cut(s) 432, 462
BciT130I CCWGG 3 cut(s) 110, 345, 433
BcoDI GTCTC 3 cut(s) 58, 334, 536
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 7 cut(s) 128, 131, 134, 335, 360, 429, 450
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 7 cut(s) 129, 132, 135, 336, 361, 430, 451
Bme1390I CCNGG 3 cut(s) 110, 345, 433
Bme18I GGWCC 1 cut(s) 373
BmeRI GACNNNNNGTC 1 cut(s) 549
BmeT110I CYCGRG 2 cut(s) 401, 455
BmgT120I GGNCC 4 cut(s) 112, 357, 373, 451
BmiI GGNNCC 3 cut(s) 181, 374, 375
BmrFI CCNGG 3 cut(s) 110, 345, 433
BmsI GCATC 1 cut(s) 297
BoxI GACNNNNGTC 1 cut(s) 378
Bpu1102I GCTNAGC 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 2 cut(s) 334, 536
BsaJI CCNNGG 8 cut(s) 27, 76, 108, 253, 344, 360, 432, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 176, 502
Bse1I ACTGG 3 cut(s) 514, 522, 564
BseBI CCWGG 3 cut(s) 110, 345, 433
BseDI CCNNGG 8 cut(s) 27, 76, 108, 253, 344, 360, 432, 501
BseGI GGATG 1 cut(s) 497
BseLI CCNNNNNNNGG 3 cut(s) 67, 176, 502
BseNI ACTGG 3 cut(s) 514, 522, 564
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 145, 440
Bsh1236I CGCG 5 cut(s) 78, 362, 379, 384, 386
BshFI GGCC 3 cut(s) 113, 359, 452
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 2 cut(s) 401, 455
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 386, 418
BslI CCNNNNNNNGG 3 cut(s) 67, 176, 502
BsmAI GTCTC 3 cut(s) 58, 334, 536
BsmFI GGGAC 2 cut(s) 386, 418
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 3 cut(s) 113, 359, 452
Bso31I GGTCTC 2 cut(s) 334, 536
BsoBI CYCGRG 2 cut(s) 401, 455
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 138, 184
Bsp1720I GCTNAGC 1 cut(s) 480
BspANI GGCC 3 cut(s) 113, 359, 452
BspFNI CGCG 5 cut(s) 78, 362, 379, 384, 386
BspLI GGNNCC 3 cut(s) 181, 374, 375
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 2 cut(s) 334, 536
BsrI ACTGG 3 cut(s) 514, 522, 564
BssECI CCNNGG 8 cut(s) 27, 76, 108, 253, 344, 360, 432, 501
BssMI GATC 2 cut(s) 138, 184
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 27, 253
Bst2UI CCWGG 3 cut(s) 110, 345, 433
Bst4CI ACNGT 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 8, 42, 281
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 2 cut(s) 76, 360
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 5 cut(s) 78, 362, 379, 384, 386
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 3 cut(s) 6, 182, 386
BstKTI GATC 2 cut(s) 141, 187
BstMAI GTCTC 3 cut(s) 58, 334, 536
BstMBI GATC 2 cut(s) 138, 184
BstMWI GCNNNNNNNGC 6 cut(s) 127, 133, 280, 425, 434, 476
BstNI CCWGG 3 cut(s) 110, 345, 433
BstPAI GACNNNNGTC 1 cut(s) 378
BstSCI CCNGG 3 cut(s) 108, 343, 431
BstUI CGCG 5 cut(s) 78, 362, 379, 384, 386
BstV1I GCAGC 2 cut(s) 145, 440
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 3 cut(s) 113, 359, 452
BtgI CCRYGG 2 cut(s) 76, 360
BtsCI GGATG 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 8, 42, 281
CfoI GCGC 3 cut(s) 6, 182, 386
Cfr13I GGNCC 4 cut(s) 112, 357, 373, 451
Cfr42I CCGCGG 2 cut(s) 79, 363
CseI GACGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 322, 516
CviQI GTAC 2 cut(s) 322, 516
DdeI CTNAG 1 cut(s) 480
DinI GGCGCC 1 cut(s) 181
DpnI GATC 2 cut(s) 140, 186
DpnII GATC 2 cut(s) 138, 184
DriI GACNNNNNGTC 1 cut(s) 549
Eam1105I GACNNNNNGTC 1 cut(s) 549
EciI GGCGGA 2 cut(s) 46, 434
Eco130I CCWWGG 2 cut(s) 27, 253
Eco31I GGTCTC 2 cut(s) 334, 536
Eco47I GGWCC 1 cut(s) 373
Eco72I CACGTG 1 cut(s) 219
Eco88I CYCGRG 2 cut(s) 401, 455
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 108, 343, 431
EcoT14I CCWWGG 2 cut(s) 27, 253
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 27, 253
FaiI YATR 3 cut(s) 147, 229, 441
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 2 cut(s) 386, 418
FauI CCCGC 2 cut(s) 279, 384
Fnu4HI GCNGC 7 cut(s) 128, 131, 134, 335, 360, 429, 450
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 7 cut(s) 128, 131, 134, 335, 360, 429, 450
FspBI CTAG 1 cut(s) 315
GlaI GCGC 3 cut(s) 5, 181, 385
GluI GCNGC 7 cut(s) 128, 131, 134, 335, 360, 429, 450
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 3 cut(s) 113, 359, 452
HapII CCGG 1 cut(s) 15
HgaI GACGC 1 cut(s) 368
HhaI GCGC 3 cut(s) 6, 182, 386
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 3 cut(s) 4, 180, 384
HinP1I GCGC 3 cut(s) 4, 180, 384
HinfI GANTC 2 cut(s) 209, 367
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 208, 214, 414, 505
Hpy188III TCNNGA 3 cut(s) 193, 371, 403
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 2 cut(s) 218, 407
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 133, 280, 425, 434, 476
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 2 cut(s) 218, 407
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 3 cut(s) 4, 180, 384
KasI GGCGCC 1 cut(s) 179
KflI GGGWCCC 1 cut(s) 373
KspI CCGCGG 2 cut(s) 79, 363
Kzo9I GATC 2 cut(s) 138, 184
LmnI GCTCC 3 cut(s) 31, 37, 467
Lsp1109I GCAGC 2 cut(s) 145, 440
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 218, 407
MalI GATC 2 cut(s) 140, 186
MboI GATC 2 cut(s) 138, 184
MboII GAAGA 2 cut(s) 313, 316
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 78, 136, 362
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 3 cut(s) 110, 345, 433
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 3 cut(s) 110, 345, 433
MvnI CGCG 5 cut(s) 78, 362, 379, 384, 386
MwoI GCNNNNNNNGC 6 cut(s) 127, 133, 280, 425, 434, 476
NarI GGCGCC 1 cut(s) 180
NdeII GATC 2 cut(s) 138, 184
NlaIV GGNNCC 3 cut(s) 181, 374, 375
PaeR7I CTCGAG 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 209, 367
PkrI GCNGC 7 cut(s) 129, 132, 135, 336, 361, 430, 451
PluTI GGCGCC 1 cut(s) 183
PmaCI CACGTG 1 cut(s) 219
PmlI CACGTG 1 cut(s) 219
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 373
PshAI GACNNNNGTC 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 108, 343, 431
PspCI CACGTG 1 cut(s) 219
PspGI CCWGG 3 cut(s) 108, 343, 431
PspN4I GGNNCC 3 cut(s) 181, 374, 375
PspPI GGNCC 4 cut(s) 112, 357, 373, 451
PspPPI RGGWCCY 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 455
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 2 cut(s) 323, 517
RsaNI GTAC 2 cut(s) 322, 516
SacII CCGCGG 2 cut(s) 79, 363
SatI GCNGC 7 cut(s) 128, 131, 134, 335, 360, 429, 450
Sau3AI GATC 2 cut(s) 138, 184
Sau96I GGNCC 4 cut(s) 112, 357, 373, 451
ScrFI CCNGG 3 cut(s) 110, 345, 433
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 72, 221, 228, 410, 472, 481, 486
SfaNI GCATC 1 cut(s) 297
SfoI GGCGCC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 455
Sfr303I CCGCGG 2 cut(s) 79, 363
SgrBI CCGCGG 2 cut(s) 79, 363
SinI GGWCC 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 108, 343, 431
StyI CCWWGG 2 cut(s) 27, 253
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 2 cut(s) 221, 410
TaqI TCGA 1 cut(s) 456
TatI WGTACW 1 cut(s) 321
TauI GCSGC 5 cut(s) 130, 133, 337, 362, 452
TfiI GAWTC 2 cut(s) 209, 367
TscAI CASTG 1 cut(s) 514
TseI GCWGC 2 cut(s) 133, 428
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.