DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 90 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 79 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 32, 64 |
| AluBI | AGCT | 1 cut(s) | 164 |
| AluI | AGCT | 1 cut(s) | 164 |
| AlwI | GGATC | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 64 |
| BanII | GRGCYC | 1 cut(s) | 157 |
| BccI | CCATC | 1 cut(s) | 28 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 111, 143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 79 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 79 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 79 |
| Bsp1286I | GDGCHC | 1 cut(s) | 157 |
| Bsp143I | GATC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspPI | GGATC | 1 cut(s) | 90 |
| BssMI | GATC | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 1 cut(s) | 225 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| BstKTI | GATC | 1 cut(s) | 85 |
| BstMBI | GATC | 1 cut(s) | 82 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 161 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| CviJI | RGCY | 2 cut(s) | 155, 164 |
| CviKI_1 | RGCY | 2 cut(s) | 155, 164 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| DpnI | GATC | 1 cut(s) | 84 |
| DpnII | GATC | 1 cut(s) | 82 |
| Eco24I | GRGCYC | 1 cut(s) | 157 |
| EcoT38I | GRGCYC | 1 cut(s) | 157 |
| FaiI | YATR | 6 cut(s) | 9, 26, 78, 113, 144, 219 |
| FriOI | GRGCYC | 1 cut(s) | 157 |
| HinfI | GANTC | 2 cut(s) | 102, 167 |
| HphI | GGTGA | 2 cut(s) | 62, 64 |
| HpyCH4III | ACNGT | 1 cut(s) | 225 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 161 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| Kzo9I | GATC | 1 cut(s) | 82 |
| LpnPI | CCDG | 2 cut(s) | 42, 143 |
| MaeIII | GTNAC | 1 cut(s) | 52 |
| MalI | GATC | 1 cut(s) | 84 |
| MboI | GATC | 1 cut(s) | 82 |
| MhlI | GDGCHC | 1 cut(s) | 157 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MnlI | CCTC | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 161 |
| NdeII | GATC | 1 cut(s) | 82 |
| NmuCI | GTSAC | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 102 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| Sau3AI | GATC | 1 cut(s) | 82 |
| SchI | GAGTC | 1 cut(s) | 161 |
| SduI | GDGCHC | 1 cut(s) | 157 |
| SetI | ASST | 3 cut(s) | 61, 162, 166 |
| SgeI | CNNG | 6 cut(s) | 69, 142, 161, 170, 185, 214 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| TaaI | ACNGT | 1 cut(s) | 225 |
| TfiI | GAWTC | 1 cut(s) | 102 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TseFI | GTSAC | 1 cut(s) | 52 |
| Tsp45I | GTSAC | 1 cut(s) | 52 |
| TspDTI | ATGAA | 1 cut(s) | 33 |
| TspRI | CASTG | 1 cut(s) | 190 |