Rroxscaffold_5G00386220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000325
Physical Location & Seq
Forward (+)
65165361 .. 65171534
6174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386220.1

Sequence Viewer

Length: 384 bp
ATGTCGAATGCTTCCTTCCCCCTGGCCACCAAGAATATATTGAGATTTAACTTCAATAAGCGTCGGTGGGTTTCGAACCCGTGTGTGAAAGTTCCACACCTGAAAGCTCTTACCAACTCGACCAGATCTGAATTTCAGTTTTTGGGTGAGAATGGAATTGATTTGCAAGGTGAGGAACAAGATGATTTAGTAAGTGAGGAAGGAGATGATTTAGTAAGTGAGGATGAAGTTGATGATTCTATTCCTATTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAAATTTCAATGAATCATGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

4.26

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 2 cut(s) 131, 318
AgsI TTSAA 2 cut(s) 55, 324
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 107, 373
AluI AGCT 2 cut(s) 107, 373
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 131, 318
AsuHPI GGTGA 2 cut(s) 158, 182
AsuII TTCGAA 1 cut(s) 74
BalI TGGCCA 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 23
BglII AGATCT 1 cut(s) 125
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 373
BshFI GGCC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 125
BspANI GGCC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 263
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 263
CseI GACGC 1 cut(s) 50
CviAII CATG 1 cut(s) 332
CviJI RGCY 3 cut(s) 26, 107, 373
CviKI_1 RGCY 3 cut(s) 26, 107, 373
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 335
FaiI YATR 3 cut(s) 38, 285, 333
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 371
GluI GCNGC 1 cut(s) 371
GsaI CCCAGC 1 cut(s) 377
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 335
HinfI GANTC 2 cut(s) 236, 328
HphI GGTGA 2 cut(s) 158, 182
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 314
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 25, 194, 353
HpyCH4V TGCA 2 cut(s) 166, 308
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 8, 35, 113, 136, 359
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 2 cut(s) 333, 368
MfeI CAATTG 1 cut(s) 256
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 5 cut(s) 131, 156, 256, 318, 337
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 3 cut(s) 166, 190, 214
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 23
NdeII GATC 1 cut(s) 125
NlaIII CATG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 251
NspV TTCGAA 1 cut(s) 74
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 236, 328
PkrI GCNGC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 21
PsuI RGATCY 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 373
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 23
SetI ASST 4 cut(s) 102, 109, 172, 375
SfuI TTCGAA 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 5 cut(s) 131, 156, 256, 318, 337
StyD4I CCNGG 1 cut(s) 21
TaqI TCGA 3 cut(s) 5, 74, 119
TasI AATT 5 cut(s) 131, 156, 256, 318, 337
TfiI GAWTC 2 cut(s) 236, 328
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 240, 294, 300, 341, 369
XapI RAATTY 2 cut(s) 131, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.