Prupe.4G268600_v2.0.a1

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000325
Physical Location & Seq
Reverse (-)
20824460 .. 20825029
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G268600.1

Sequence Viewer

Length: 486 bp
ATGAATATGGATAATAATTGCATGGAAGATGGAGAAGATTTGGTTCATTTAAGCATTCGAAAACAACTAATTCCTGTGATTGGGATGGAGTTTGAGACAGAAGACTTAGCATTTAAATTTTACAATGCATATGCATACAATATTGGTTTTAGTATTAGAAGAAGTAGTTGTCACAAATTCAAAAGTGGCCAGTTGAGAGACAGGCTTTTTGTTTGCTTCACTGAAGGTAAGCGCGAAATTGATAAGCGTGTTTCTAATGTGAAATATCATCGTGCTGAGACAAGATGTGGATGCTTAGCAAGGATGAAAATTAGTTGTCATTTGAATGAGAAGTATCGTGTCATAGAATTTGTTTATGAGCATAACCATATGACTACAAGTTCGTCTAAGACTCATTTGTTTAGGTCTCATAAGAAGATCACCTACCACATTCGCTCTTCCTGGGTGATGCTCAATAATACAATTATAATCCTTAATCAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

162

Amino Acids

19.1

Weight (kDa)

9.28

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccII CGCG 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 3 cut(s) 116, 176, 347
AcuI CTGAAG 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 181, 325
AjnI CCWGG 1 cut(s) 440
Alw26I GTCTC 4 cut(s) 89, 192, 272, 411
AoxI GGCC 1 cut(s) 187
ApoI RAATTY 3 cut(s) 116, 176, 347
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 364, 396
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 412, 457
AsuII TTCGAA 1 cut(s) 58
BalI TGGCCA 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbsI GAAGAC 1 cut(s) 108
BccI CCATC 2 cut(s) 23, 79
BciT130I CCWGG 1 cut(s) 442
BcoDI GTCTC 4 cut(s) 89, 192, 272, 411
BlpI GCTNAGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 2 cut(s) 281, 438
BpiI GAAGAC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 3 cut(s) 90, 296, 309
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 4 cut(s) 89, 192, 272, 411
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 58
Bsp143I GATC 1 cut(s) 417
Bsp1720I GCTNAGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 442
BspT104I TTCGAA 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 411
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 58
BstDEI CTNAG 4 cut(s) 106, 276, 295, 387
BstF5I GGATG 3 cut(s) 90, 296, 309
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 420
BstMAI GTCTC 4 cut(s) 89, 192, 272, 411
BstMBI GATC 1 cut(s) 417
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 440
BstUI CGCG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 90, 296, 309
BtsIMutI CAGTG 1 cut(s) 219
CfoI GCGC 1 cut(s) 234
CviAII CATG 1 cut(s) 22
CviJI RGCY 2 cut(s) 189, 205
CviKI_1 RGCY 2 cut(s) 189, 205
DdeI CTNAG 4 cut(s) 106, 276, 295, 387
DpnI GATC 1 cut(s) 419
DpnII GATC 1 cut(s) 417
DraI TTTAAA 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
Eco31I GGTCTC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 440
EcoT22I ATGCAT 2 cut(s) 130, 136
FaeI CATG 1 cut(s) 25
FatI CATG 1 cut(s) 21
FauNDI CATATG 2 cut(s) 130, 369
FokI GGATG 3 cut(s) 97, 303, 316
GlaI GCGC 1 cut(s) 233
HaeIII GGCC 1 cut(s) 189
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 391
HphI GGTGA 2 cut(s) 412, 457
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 21, 128, 134
HpyF3I CTNAG 4 cut(s) 106, 276, 295, 387
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 417
LguI GCTCTTC 1 cut(s) 442
LpnPI CCDG 5 cut(s) 87, 187, 203, 427, 454
LweI GCATC 2 cut(s) 281, 438
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 419
MboI GATC 1 cut(s) 417
MboII GAAGA 6 cut(s) 38, 47, 113, 171, 427, 429
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 8 cut(s) 16, 69, 116, 176, 237, 309, 347, 462
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 385
Mox20I TGGCCA 1 cut(s) 189
Mph1103I ATGCAT 2 cut(s) 130, 136
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 50, 114, 474
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 234
NdeI CATATG 2 cut(s) 130, 369
NdeII GATC 1 cut(s) 417
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 2 cut(s) 130, 136
NspV TTCGAA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 442
PctI GAATGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 3 cut(s) 50, 114, 474
Sau3AI GATC 1 cut(s) 417
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 442
SetI ASST 3 cut(s) 229, 407, 425
SfaNI GCATC 2 cut(s) 281, 438
SfuI TTCGAA 1 cut(s) 58
SmiI ATTTAAAT 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 8 cut(s) 16, 69, 116, 176, 237, 309, 347, 462
SspI AATATT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 440
SwaI ATTTAAAT 1 cut(s) 115
TaqI TCGA 1 cut(s) 58
TasI AATT 8 cut(s) 16, 69, 116, 176, 237, 309, 347, 462
Tru1I TTAA 3 cut(s) 50, 114, 474
Tru9I TTAA 3 cut(s) 50, 114, 474
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 17, 35, 320
TspRI CASTG 1 cut(s) 226
XapI RAATTY 3 cut(s) 116, 176, 347
Zsp2I ATGCAT 2 cut(s) 130, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.