DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 71, 84, 246 |
| AcuI | CTGAAG | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 235 |
| AgsI | TTSAA | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 84 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 188, 220 |
| AluBI | AGCT | 2 cut(s) | 114, 302 |
| AluI | AGCT | 2 cut(s) | 114, 302 |
| AlwI | GGATC | 3 cut(s) | 71, 84, 246 |
| AoxI | GGCC | 1 cut(s) | 87 |
| AspLEI | GCGC | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 3 cut(s) | 136, 218, 220 |
| BamHI | GGATCC | 1 cut(s) | 76 |
| BanII | GRGCYC | 1 cut(s) | 291 |
| BciT130I | CCWGG | 1 cut(s) | 86 |
| Bme1390I | CCNGG | 1 cut(s) | 86 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BmrFI | CCNGG | 1 cut(s) | 86 |
| BmsI | GCATC | 1 cut(s) | 180 |
| BpmI | CTGGAG | 1 cut(s) | 318 |
| Bpu10I | CCTNAGC | 1 cut(s) | 290 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseBI | CCWGG | 1 cut(s) | 86 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseMII | CTCAG | 2 cut(s) | 54, 304 |
| BshFI | GGCC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsnI | GGCC | 1 cut(s) | 89 |
| Bsp1286I | GDGCHC | 1 cut(s) | 291 |
| Bsp143I | GATC | 3 cut(s) | 76, 126, 238 |
| BspANI | GGCC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 2 cut(s) | 55, 303 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BspPI | GGATC | 3 cut(s) | 71, 84, 246 |
| BspQI | GCTCTTC | 1 cut(s) | 60 |
| BssMI | GATC | 3 cut(s) | 76, 126, 238 |
| Bst2UI | CCWGG | 1 cut(s) | 86 |
| Bst6I | CTCTTC | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 314 |
| BstDEI | CTNAG | 2 cut(s) | 63, 290 |
| BstHHI | GCGC | 1 cut(s) | 101 |
| BstKTI | GATC | 3 cut(s) | 79, 129, 241 |
| BstMBI | GATC | 3 cut(s) | 76, 126, 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 286 |
| BstNI | CCWGG | 1 cut(s) | 86 |
| BstNSI | RCATGY | 1 cut(s) | 316 |
| BstSCI | CCNGG | 1 cut(s) | 84 |
| BstX2I | RGATCY | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 76 |
| BsuRI | GGCC | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 314 |
| CfoI | GCGC | 1 cut(s) | 101 |
| CviAII | CATG | 1 cut(s) | 313 |
| CviJI | RGCY | 4 cut(s) | 89, 114, 289, 302 |
| CviKI_1 | RGCY | 4 cut(s) | 89, 114, 289, 302 |
| DdeI | CTNAG | 2 cut(s) | 63, 290 |
| DpnI | GATC | 3 cut(s) | 78, 128, 240 |
| DpnII | GATC | 3 cut(s) | 76, 126, 238 |
| Eam1104I | CTCTTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 60 |
| Eco147I | AGGCCT | 1 cut(s) | 89 |
| Eco24I | GRGCYC | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 1 cut(s) | 94 |
| EcoRII | CCWGG | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 291 |
| FaeI | CATG | 1 cut(s) | 316 |
| FaiI | YATR | 7 cut(s) | 37, 165, 182, 234, 269, 278, 314 |
| FatI | CATG | 1 cut(s) | 312 |
| FriOI | GRGCYC | 1 cut(s) | 291 |
| GlaI | GCGC | 1 cut(s) | 100 |
| GsuI | CTGGAG | 1 cut(s) | 318 |
| HaeIII | GGCC | 1 cut(s) | 89 |
| HhaI | GCGC | 1 cut(s) | 101 |
| Hin1II | CATG | 1 cut(s) | 316 |
| Hin6I | GCGC | 1 cut(s) | 99 |
| HinP1I | GCGC | 1 cut(s) | 99 |
| HinfI | GANTC | 2 cut(s) | 145, 258 |
| HphI | GGTGA | 3 cut(s) | 136, 218, 220 |
| Hpy188I | TCNGA | 1 cut(s) | 64 |
| Hpy188III | TCNNGA | 1 cut(s) | 297 |
| Hpy99I | CGWCG | 2 cut(s) | 74, 121 |
| HpyAV | CCTTC | 3 cut(s) | 100, 112, 142 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 193, 312, 316 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 286 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 290 |
| Hsp92II | CATG | 1 cut(s) | 316 |
| HspAI | GCGC | 1 cut(s) | 99 |
| Kzo9I | GATC | 3 cut(s) | 76, 126, 238 |
| LguI | GCTCTTC | 1 cut(s) | 60 |
| LmnI | GCTCC | 1 cut(s) | 299 |
| LpnPI | CCDG | 7 cut(s) | 71, 98, 107, 109, 198, 277, 282 |
| LweI | GCATC | 1 cut(s) | 180 |
| MaeIII | GTNAC | 3 cut(s) | 43, 151, 208 |
| MalI | GATC | 3 cut(s) | 78, 128, 240 |
| MboI | GATC | 3 cut(s) | 76, 126, 238 |
| MboII | GAAGA | 3 cut(s) | 47, 97, 100 |
| MflI | RGATCY | 1 cut(s) | 76 |
| MhlI | GDGCHC | 1 cut(s) | 291 |
| MluCI | AATT | 2 cut(s) | 136, 318 |
| MnlI | CCTC | 3 cut(s) | 58, 90, 240 |
| MspR9I | CCNGG | 1 cut(s) | 86 |
| MvaI | CCWGG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 286 |
| NdeII | GATC | 3 cut(s) | 76, 126, 238 |
| NlaIII | CATG | 1 cut(s) | 316 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| NmuCI | GTSAC | 3 cut(s) | 43, 151, 208 |
| NspI | RCATGY | 1 cut(s) | 316 |
| PaeI | GCATGC | 1 cut(s) | 316 |
| PceI | AGGCCT | 1 cut(s) | 89 |
| PciSI | GCTCTTC | 1 cut(s) | 60 |
| PfeI | GAWTC | 2 cut(s) | 145, 258 |
| Psp6I | CCWGG | 1 cut(s) | 84 |
| PspGI | CCWGG | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| PsuI | RGATCY | 1 cut(s) | 76 |
| SapI | GCTCTTC | 1 cut(s) | 60 |
| Sau3AI | GATC | 3 cut(s) | 76, 126, 238 |
| ScrFI | CCNGG | 1 cut(s) | 86 |
| SduI | GDGCHC | 1 cut(s) | 291 |
| SetI | ASST | 8 cut(s) | 69, 116, 164, 217, 276, 296, 304, 326 |
| SfaNI | GCATC | 1 cut(s) | 180 |
| SphI | GCATGC | 1 cut(s) | 316 |
| Sse9I | AATT | 2 cut(s) | 136, 318 |
| SseBI | AGGCCT | 1 cut(s) | 89 |
| StuI | AGGCCT | 1 cut(s) | 89 |
| StyD4I | CCNGG | 1 cut(s) | 84 |
| TasI | AATT | 2 cut(s) | 136, 318 |
| TfiI | GAWTC | 2 cut(s) | 145, 258 |
| TscAI | CASTG | 1 cut(s) | 160 |
| TseFI | GTSAC | 3 cut(s) | 43, 151, 208 |
| Tsp45I | GTSAC | 3 cut(s) | 43, 151, 208 |
| TspDTI | ATGAA | 2 cut(s) | 47, 189 |
| TspRI | CASTG | 1 cut(s) | 160 |
| XceI | RCATGY | 1 cut(s) | 316 |