Rh1BG023600

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000325
Physical Location & Seq
Reverse (-)
3129171 .. 3131410
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG023600.1

Sequence Viewer

Length: 387 bp
ATGGAGTTTAGTTCTGATGAGAGCGCATATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACAAAAGAAGAGAAACAACAAGGGTTTGGTTGTAAAGTTGCTTTATTGTTGCTCAAAAGAAGGTTACCGAAAGACCAGAACAAAGAGGGAAACATCTTATTCATTACCAGTTACAAGGGTCGGTTGTAAAGCCCATATGAGTTGCTATCGTCAAAGCAACGGAAAATTCAAGATTGTGTCGTTTGAGACAAATCACAATTATGAGTTGATTAAAACACCTATGAAGCATATGTTAAAGATTAATCGAAGTTTCTCTAAAGCTCAAAAAGAACATGCTGATGATGCTGATGCTGAGAATCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

128

Amino Acids

14.83

Weight (kDa)

9.8

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 13 - 97 4.9e-18 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 245
AgsI TTSAA 2 cut(s) 67, 250
AluBI AGCT 2 cut(s) 35, 341
AluI AGCT 2 cut(s) 35, 341
Alw26I GTCTC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 245
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 260
BmsI GCATC 2 cut(s) 352, 358
Bse1I ACTGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 364
BsrI ACTGG 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 372
BstEII GGTNACC 1 cut(s) 143
BstHHI GCGC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 32, 362
BstNSI RCATGY 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 143
CfoI GCGC 1 cut(s) 26
CviAII CATG 1 cut(s) 353
CviJI RGCY 3 cut(s) 35, 212, 341
CviKI_1 RGCY 3 cut(s) 35, 212, 341
DdeI CTNAG 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
FaeI CATG 1 cut(s) 356
FatI CATG 1 cut(s) 352
FauNDI CATATG 2 cut(s) 216, 309
GlaI GCGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 362
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 45, 169, 201
LweI GCATC 2 cut(s) 352, 358
MaeIII GTNAC 2 cut(s) 143, 190
MboII GAAGA 1 cut(s) 100
MluCI AATT 2 cut(s) 245, 277
MnlI CCTC 2 cut(s) 44, 159
MseI TTAA 3 cut(s) 291, 314, 321
MslI CAYNNNNRTG 2 cut(s) 279, 357
MwoI GCNNNNNNNGC 2 cut(s) 32, 362
NdeI CATATG 2 cut(s) 216, 309
NlaIII CATG 1 cut(s) 356
NspI RCATGY 1 cut(s) 356
PfeI GAWTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 321
PspEI GGTNACC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 279, 357
SaqAI TTAA 3 cut(s) 291, 314, 321
SetI ASST 4 cut(s) 37, 145, 301, 343
SfaNI GCATC 2 cut(s) 352, 358
SgeI CNNG 7 cut(s) 72, 112, 168, 200, 207, 262, 365
SmiMI CAYNNNNRTG 2 cut(s) 279, 357
Sse9I AATT 2 cut(s) 245, 277
TaqI TCGA 1 cut(s) 325
TasI AATT 2 cut(s) 245, 277
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 291, 314, 321
Tru9I TTAA 3 cut(s) 291, 314, 321
TspDTI ATGAA 2 cut(s) 171, 317
TspGWI ACGGA 1 cut(s) 255
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.