FvH4_3g22481

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000325
Physical Location & Seq
Forward (+)
15508806 .. 15510617
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22481.t1

Sequence Viewer

Length: 858 bp
ATGGAACGTGAAATTCCTATGCCAACGAACTCAAACGACTTATCACAACCGGATGTGGAAGGTACAGGTAGTGGTGATTGTCAAATATCTAGCACATCAGATTTTGAAAATGGTACAGACTTGAATGGTTTCATAGCAGTTGAAAGTAATGAAGAAGAGTCAGAAGAAGACACAAGACCTAGTGAAAAGGCTGATTCAATCCATTCCAGAATGCGTCAAGAACTGATTCCCGTAGTTGGTATGGAGTTTGCAACAGAAGATGATGCATTGGCCTTTTACAATCATTATGCATATAGATTTGGTTTCGGTACTAGATTAAGTACATCACATACATCTTCCAGTGGCTTACTAAGGGATAGACTTTTTGTTTGCTCAGCTAAAGGTAAACGTGGAAAAGACAAGCGAAATCTGTATGTCAAATCTCATCGTGCTGAGACAAGATTTGGTTGTAGAGCAAGGATGAAAATTAAGTATGATCTGAAGTCTGGAAAGTATACTGTTGTGGAATTTTTTGCTGATCATACTCATGTGACTTCAACTCCTAGTAAGACCCATCGTTTTAGGTCTCATAGGAAAATCTCTATTGCTCAAAATGTTCAAGCTGATATGGCTGAAGCTTCAGGACTCAATCCGAAAGAAACTCTTGAGCTATTGAGTCGACAAGCAGGTGGACGTGAGCATTTGGAATTTATTCCAGAAGATTATAGGAATTATTTACGTTCAAAGCGAACAAGAGAAATGAAGTCTGGGGATACCGGTGGTGTTTTGGAATATCTACAAAGAATGCAATCGAATAATCCTAGTTTTACTTATGCTATACAAGTTGATGCAGATGAGTTGATAACTAATATCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

286

Amino Acids

32.32

Weight (kDa)

6.17

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 92 - 177 9.4e-19 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 656
Acc36I ACCTGC 1 cut(s) 656
AccI GTMKAC 2 cut(s) 494, 658
AcsI RAATTY 3 cut(s) 12, 506, 686
AcuI CTGAAG 3 cut(s) 500, 603, 633
AfaI GTAC 4 cut(s) 64, 115, 310, 322
AfiI CCNNNNNNNGG 1 cut(s) 236
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 7 cut(s) 107, 124, 143, 198, 537, 599, 723
AjiI CACGTC 1 cut(s) 674
AluBI AGCT 4 cut(s) 377, 602, 617, 649
AluI AGCT 4 cut(s) 377, 602, 617, 649
Alw26I GTCTC 2 cut(s) 428, 570
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 3 cut(s) 12, 506, 686
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AsiGI ACCGGT 1 cut(s) 755
Asp700I GAANNNNTTC 3 cut(s) 128, 225, 690
AsuHPI GGTGA 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 1 cut(s) 561
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 428, 570
BfaI CTAG 6 cut(s) 90, 180, 312, 543, 801, 856
BfuAI ACCTGC 1 cut(s) 656
BfuI GTATCC 1 cut(s) 745
BlpI GCTNAGC 1 cut(s) 373
BmgBI CACGTC 1 cut(s) 674
BmsI GCATC 2 cut(s) 253, 817
BpiI GAAGAC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 570
BsaWI WCCGGW 2 cut(s) 49, 755
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 58, 465
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 387, 423
BseNI ACTGG 1 cut(s) 339
BshFI GGCC 1 cut(s) 272
BshTI ACCGGT 1 cut(s) 755
BsiSI CCGG 2 cut(s) 50, 756
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 428, 570
BsmI GAATGC 2 cut(s) 216, 789
BsnI GGCC 1 cut(s) 272
Bso31I GGTCTC 1 cut(s) 570
Bsp143I GATC 2 cut(s) 475, 517
Bsp1720I GCTNAGC 1 cut(s) 373
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 386, 424
BspMI ACCTGC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 570
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 755
BssMI GATC 2 cut(s) 475, 517
BssNAI GTATAC 1 cut(s) 495
Bst1107I GTATAC 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 350, 373, 432
BstF5I GGATG 2 cut(s) 58, 465
BstKTI GATC 2 cut(s) 478, 520
BstMAI GTCTC 2 cut(s) 428, 570
BstMBI GATC 2 cut(s) 475, 517
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 174
BstZ17I GTATAC 1 cut(s) 495
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 1 cut(s) 272
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 2 cut(s) 58, 465
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 755
CseI GACGC 1 cut(s) 203
Csp6I GTAC 4 cut(s) 63, 114, 309, 321
CspAI ACCGGT 1 cut(s) 755
CviAII CATG 1 cut(s) 527
CviJI RGCY 8 cut(s) 191, 272, 345, 377, 602, 611, 617, 649
CviKI_1 RGCY 8 cut(s) 191, 272, 345, 377, 602, 611, 617, 649
CviQI GTAC 4 cut(s) 63, 114, 309, 321
DdeI CTNAG 3 cut(s) 350, 373, 432
DpnI GATC 2 cut(s) 477, 519
DpnII GATC 2 cut(s) 475, 517
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 570
Eco57I CTGAAG 3 cut(s) 500, 603, 633
EcoT22I ATGCAT 2 cut(s) 268, 292
FaeI CATG 1 cut(s) 530
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FatI CATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 2 cut(s) 494, 658
FokI GGATG 2 cut(s) 65, 472
FspBI CTAG 6 cut(s) 90, 180, 312, 543, 801, 856
HaeIII GGCC 1 cut(s) 272
HapII CCGG 2 cut(s) 50, 756
HgaI GACGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 530
HincII GTYRAC 1 cut(s) 659
HindII GTYRAC 1 cut(s) 659
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 5 cut(s) 158, 194, 226, 624, 655
HpaII CCGG 2 cut(s) 50, 756
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 4 cut(s) 386, 495, 659, 671
Hpy188I TCNGA 4 cut(s) 100, 163, 480, 633
Hpy188III TCNNGA 6 cut(s) 207, 218, 486, 621, 644, 695
Hpy8I GTNNAC 4 cut(s) 386, 495, 659, 671
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 4 cut(s) 7, 388, 673, 718
HpyCH4V TGCA 5 cut(s) 251, 266, 290, 787, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 3 cut(s) 350, 373, 432
HpySE526I ACGT 4 cut(s) 7, 388, 673, 718
Hsp92II CATG 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 475, 517
LweI GCATC 2 cut(s) 253, 817
MaeI CTAG 6 cut(s) 90, 180, 312, 543, 801, 856
MaeII ACGT 4 cut(s) 7, 388, 673, 718
MaeIII GTNAC 1 cut(s) 529
MalI GATC 2 cut(s) 477, 519
MboI GATC 2 cut(s) 475, 517
MboII GAAGA 8 cut(s) 164, 167, 176, 179, 269, 327, 710, 844
MluCI AATT 5 cut(s) 12, 465, 506, 686, 709
MlyI GAGTC 3 cut(s) 167, 618, 664
Mph1103I ATGCAT 2 cut(s) 268, 292
MroXI GAANNNNTTC 3 cut(s) 128, 225, 690
MseI TTAA 2 cut(s) 317, 468
MslI CAYNNNNRTG 1 cut(s) 525
MspI CCGG 2 cut(s) 50, 756
Mva1269I GAATGC 2 cut(s) 216, 789
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 2 cut(s) 475, 517
NlaIII CATG 1 cut(s) 530
NmuCI GTSAC 1 cut(s) 529
NsiI ATGCAT 2 cut(s) 268, 292
PaqCI CACCTGC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PctI GAATGC 2 cut(s) 216, 789
PdmI GAANNNNTTC 3 cut(s) 128, 225, 690
PfeI GAWTC 2 cut(s) 194, 226
PinAI ACCGGT 1 cut(s) 755
PleI GAGTC 3 cut(s) 166, 618, 663
PpsI GAGTC 3 cut(s) 166, 618, 663
RsaI GTAC 4 cut(s) 64, 115, 310, 322
RsaNI GTAC 4 cut(s) 63, 114, 309, 321
RseI CAYNNNNRTG 1 cut(s) 525
SalI GTCGAC 1 cut(s) 657
SaqAI TTAA 2 cut(s) 317, 468
Sau3AI GATC 2 cut(s) 475, 517
SchI GAGTC 3 cut(s) 167, 618, 664
SfaNI GCATC 2 cut(s) 253, 817
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 5 cut(s) 12, 465, 506, 686, 709
SspMI CTAG 6 cut(s) 90, 180, 312, 543, 801, 856
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 4 cut(s) 10, 391, 676, 721
TaqI TCGA 2 cut(s) 658, 791
TasI AATT 5 cut(s) 12, 465, 506, 686, 709
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 2 cut(s) 194, 226
Tru1I TTAA 2 cut(s) 317, 468
Tru9I TTAA 2 cut(s) 317, 468
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 529
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 4 cut(s) 121, 165, 476, 755
TspRI CASTG 1 cut(s) 346
XapI RAATTY 3 cut(s) 12, 506, 686
XmiI GTMKAC 2 cut(s) 494, 658
XmnI GAANNNNTTC 3 cut(s) 128, 225, 690
XspI CTAG 6 cut(s) 90, 180, 312, 543, 801, 856
Zsp2I ATGCAT 2 cut(s) 268, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.