DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 57 |
| AfaI | GTAC | 2 cut(s) | 131, 192 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 46 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 31 |
| AluBI | AGCT | 1 cut(s) | 183 |
| AluI | AGCT | 1 cut(s) | 183 |
| AlwI | GGATC | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 31 |
| BanII | GRGCYC | 1 cut(s) | 172 |
| BmsI | GCATC | 1 cut(s) | 139 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 82, 114 |
| BpmI | CTGGAG | 1 cut(s) | 199 |
| Bpu10I | CCTNAGC | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 1 cut(s) | 124 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 46 |
| BseDI | CCNNGG | 1 cut(s) | 124 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 46 |
| BseMII | CTCAG | 1 cut(s) | 185 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 1 cut(s) | 184 |
| BspPI | GGATC | 1 cut(s) | 57 |
| BssECI | CCNNGG | 1 cut(s) | 124 |
| BssMI | GATC | 1 cut(s) | 49 |
| BssT1I | CCWWGG | 1 cut(s) | 124 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 1 cut(s) | 154 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 167 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| Cac8I | GCNNGC | 1 cut(s) | 154 |
| Csp6I | GTAC | 2 cut(s) | 130, 191 |
| CviAII | CATG | 1 cut(s) | 194 |
| CviJI | RGCY | 3 cut(s) | 156, 170, 183 |
| CviKI_1 | RGCY | 3 cut(s) | 156, 170, 183 |
| CviQI | GTAC | 2 cut(s) | 130, 191 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 1 cut(s) | 124 |
| Eco24I | GRGCYC | 1 cut(s) | 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 124 |
| EcoT38I | GRGCYC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 124 |
| FaeI | CATG | 1 cut(s) | 197 |
| FaiI | YATR | 6 cut(s) | 45, 80, 138, 140, 159, 195 |
| FatI | CATG | 1 cut(s) | 193 |
| FriOI | GRGCYC | 1 cut(s) | 172 |
| GsuI | CTGGAG | 1 cut(s) | 199 |
| Hin1II | CATG | 1 cut(s) | 197 |
| HinfI | GANTC | 1 cut(s) | 69 |
| HphI | GGTGA | 2 cut(s) | 29, 31 |
| Hpy188III | TCNNGA | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 167 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| Hsp92II | CATG | 1 cut(s) | 197 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LmnI | GCTCC | 1 cut(s) | 180 |
| LpnPI | CCDG | 4 cut(s) | 9, 138, 158, 163 |
| LweI | GCATC | 1 cut(s) | 139 |
| MaeIII | GTNAC | 1 cut(s) | 19 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 1 cut(s) | 199 |
| MnlI | CCTC | 1 cut(s) | 51 |
| MseI | TTAA | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 167 |
| NdeII | GATC | 1 cut(s) | 49 |
| NlaIII | CATG | 1 cut(s) | 197 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PfeI | GAWTC | 1 cut(s) | 69 |
| RsaI | GTAC | 2 cut(s) | 131, 192 |
| RsaNI | GTAC | 2 cut(s) | 130, 191 |
| SaqAI | TTAA | 1 cut(s) | 113 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SetI | ASST | 3 cut(s) | 28, 177, 185 |
| SfaNI | GCATC | 1 cut(s) | 139 |
| SgeI | CNNG | 8 cut(s) | 36, 113, 137, 158, 165, 176, 185, 190 |
| Sse9I | AATT | 1 cut(s) | 199 |
| StyI | CCWWGG | 1 cut(s) | 124 |
| TasI | AATT | 1 cut(s) | 199 |
| TfiI | GAWTC | 1 cut(s) | 69 |
| Tru1I | TTAA | 1 cut(s) | 113 |
| Tru9I | TTAA | 1 cut(s) | 113 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| XceI | RCATGY | 1 cut(s) | 197 |