FvH4_7g25201

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000325
Physical Location & Seq
Forward (+)
19268040 .. 19269809
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25201.t1

Sequence Viewer

Length: 480 bp
ATGGATATAAGTGACGTGGCGCGTTATCAGTCGCTTTCGTGGCGCTTCGGCCCCGATCCTGTGGCCACGTGTTCTCCCGAACCTTCCCGAACCACCCGTTTTACGCGTCACTGTATTGGGACTGAAGCAATCTGTGTCCTGCTATTTTTAGCTTCCCTCCGGAGACTAGGGTCTTCGTTGTTGATCCACCACCACGGCAGTGACGGCGCCACCGTACGTCTTATGGACACAGAAAATAGTTGCGAAGAGGTTCATATTCAAGCAAACTCACGTCGAAAGTTGGATTTTTTAGATGAAATTGACTTGAACACTTCGGCTGAAGATGATAGTGCGGAAGAAAAGGAGTTCGAACCTGTTGAAGGTAATGAAAAAGTAGATTATGTACATTCCAAGGTTAGAAAAGAGTTGATTCCAGTCATTGGAATGGAGCATGTTGAACAAGTGTTGTTTGTTCCTTGTAGAAGATGCACCATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

160

Amino Acids

18.01

Weight (kDa)

5.22

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 419
AccII CGCG 2 cut(s) 22, 106
AccIII TCCGGA 1 cut(s) 159
AciI CCGC 1 cut(s) 332
AclWI GGATC 2 cut(s) 50, 178
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 144, 339
AcvI CACGTG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 216, 384
AfiI CCNNNNNNNGG 2 cut(s) 359, 419
AflIII ACRYGT 2 cut(s) 68, 104
AgsI TTSAA 4 cut(s) 260, 307, 359, 437
AjiI CACGTC 2 cut(s) 16, 272
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 50, 178
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 2 cut(s) 49, 63
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 3 cut(s) 22, 45, 209
AspS9I GGNCC 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 348
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 206
BbrPI CACGTG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 165
BceAI ACGGC 2 cut(s) 211, 220
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 2 cut(s) 46, 210
BmgBI CACGTC 2 cut(s) 16, 272
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 52, 208
BmsI GCATC 1 cut(s) 455
BoxI GACNNNNGTC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 193, 390
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 419
Bse1I ACTGG 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 193, 390
BseLI CCNNNNNNNGG 2 cut(s) 359, 419
BseNI ACTGG 1 cut(s) 413
Bsh1236I CGCG 2 cut(s) 22, 106
BshFI GGCC 2 cut(s) 51, 65
BshNI GGYRCC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 160
BsiWI CGTACG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 359, 419
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 51, 65
Bsp119I TTCGAA 1 cut(s) 348
Bsp13I TCCGGA 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 2 cut(s) 55, 183
BspACI CCGC 1 cut(s) 332
BspANI GGCC 2 cut(s) 51, 65
BspEI TCCGGA 1 cut(s) 159
BspFNI CGCG 2 cut(s) 22, 106
BspLI GGNNCC 2 cut(s) 52, 208
BspPI GGATC 2 cut(s) 50, 178
BspT104I TTCGAA 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 193, 390
BssMI GATC 2 cut(s) 55, 183
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 113, 214
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 357
BstFNI CGCG 2 cut(s) 22, 106
BstH2I RGCGCY 2 cut(s) 46, 210
BstHHI GCGC 3 cut(s) 22, 45, 209
BstKTI GATC 2 cut(s) 58, 186
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 55, 183
BstMWI GCNNNNNNNGC 2 cut(s) 40, 204
BstNSI RCATGY 1 cut(s) 434
BstPAI GACNNNNGTC 1 cut(s) 169
BstUI CGCG 2 cut(s) 22, 106
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 51, 65
BtgI CCRYGG 1 cut(s) 193
BtrI CACGTC 2 cut(s) 16, 272
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 109, 205
CfoI GCGC 3 cut(s) 22, 45, 209
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 215, 383
CviAII CATG 1 cut(s) 431
CviJI RGCY 4 cut(s) 51, 65, 152, 317
CviKI_1 RGCY 4 cut(s) 51, 65, 152, 317
CviQI GTAC 2 cut(s) 215, 383
DinI GGCGCC 1 cut(s) 208
DpnI GATC 2 cut(s) 57, 185
DpnII GATC 2 cut(s) 55, 183
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 390
Eco57I CTGAAG 2 cut(s) 144, 339
Eco72I CACGTG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 390
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 1 cut(s) 434
FaiI YATR 5 cut(s) 8, 224, 255, 381, 432
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 430
FspBI CTAG 1 cut(s) 167
GlaI GCGC 3 cut(s) 21, 44, 208
HaeII RGCGCY 2 cut(s) 46, 210
HaeIII GGCC 2 cut(s) 51, 65
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 95
HhaI GCGC 3 cut(s) 22, 45, 209
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 3 cut(s) 20, 43, 207
HinP1I GCGC 3 cut(s) 20, 43, 207
HinfI GANTC 1 cut(s) 409
HpaII CCGG 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 77, 87, 160
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 93, 353
HpyCH4III ACNGT 2 cut(s) 113, 214
HpyCH4IV ACGT 4 cut(s) 15, 68, 217, 271
HpyCH4V TGCA 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 204
HpySE526I ACGT 4 cut(s) 15, 68, 217, 271
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 3 cut(s) 20, 43, 207
KasI GGCGCC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 55, 183
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 5 cut(s) 72, 152, 173, 366, 426
LweI GCATC 1 cut(s) 455
MaeI CTAG 1 cut(s) 167
MaeII ACGT 4 cut(s) 15, 68, 217, 271
MaeIII GTNAC 3 cut(s) 11, 107, 200
MalI GATC 2 cut(s) 57, 185
MboI GATC 2 cut(s) 55, 183
MboII GAAGA 5 cut(s) 165, 257, 332, 347, 474
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 1 cut(s) 297
MluI ACGCGT 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 167, 241
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 2 cut(s) 198, 422
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 22, 106
MwoI GCNNNNNNNGC 2 cut(s) 40, 204
NarI GGCGCC 1 cut(s) 207
NdeII GATC 2 cut(s) 55, 183
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 2 cut(s) 52, 208
NmuCI GTSAC 3 cut(s) 11, 107, 200
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 348
OliI CACNNNNGTG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 409
Pfl23II CGTACG 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 419
PluTI GGCGCC 1 cut(s) 210
PmaCI CACGTG 1 cut(s) 69
PmlI CACGTG 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 69
PshAI GACNNNNGTC 1 cut(s) 169
PspCI CACGTG 1 cut(s) 69
PspLI CGTACG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 52, 208
PspPI GGNCC 1 cut(s) 50
RsaI GTAC 2 cut(s) 216, 384
RsaNI GTAC 2 cut(s) 215, 383
RseI CAYNNNNRTG 2 cut(s) 198, 422
Sau3AI GATC 2 cut(s) 55, 183
Sau96I GGNCC 1 cut(s) 50
SfaNI GCATC 1 cut(s) 455
SfoI GGCGCC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 198, 422
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 332
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 113, 214
TaiI ACGT 4 cut(s) 18, 71, 220, 274
TaqI TCGA 2 cut(s) 274, 348
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 382
TfiI GAWTC 1 cut(s) 409
TscAI CASTG 2 cut(s) 116, 205
TseFI GTSAC 3 cut(s) 11, 107, 200
Tsp45I GTSAC 3 cut(s) 11, 107, 200
TspDTI ATGAA 3 cut(s) 242, 309, 381
TspRI CASTG 2 cut(s) 116, 205
Van91I CCANNNNNTGG 1 cut(s) 419
XagI CCTNNNNNAGG 1 cut(s) 357
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.