Rw5G024920

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000325
Physical Location & Seq
Forward (+)
35341105 .. 35342095
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024920.1

Sequence Viewer

Length: 645 bp
ATGGAACATGAATCTCCTGTGCCATCAAACTCAAAAAACTTAGCAATATCAACACCGGATGTGGAAGCTACAGATAGTTGTGATTGTCAAATATCTAGCAAATTGGATTTTGGGAGTGGTATAGACTTGAATGGTTATGTAGAAGTTGAAAATAATGAAGTTGGAGGTAGTGAAGAAGAGTCAGAAGAAGCCACAAAACCTAATGAAACGGTTAATTCTATTCATTCCCAAATGCGTCAAGAATTGATTCTTGTAGTTGGTATGGAGTTTGAAACAGAAGATGATGCACATGCTTGTTACAATCGATATGCATATAGATTTGGTTTCAGTACTAGATTAATTAAAGCACATAAATACTCCAGTGGCCTATTGAGGGACAGGCTCTTTGTTTGCTCAGCCGAAGGTACACGTGGAAGAGACAAGCGAAATCTATATGTCAAATCTCATCGTGCTGAGACAAGGTTTGGTTGTAGAGCTAAGATGAAAATTAGGTATGATCTGTTATCCAGAAAGTTCAGTGTTGTGGAATTTGTTGCTGATCATACCCATGTGACTTCAACTCCTAGTAAGGCCCATCTTTTTAGGTCTCATAGGAAAATCTCTCTTGCACAAATTGTTCAAGCTGATATGGCTTACGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

214

Amino Acids

24.18

Weight (kDa)

6.15

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 100 - 184 1.4e-16 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 527
AcvI CACGTG 1 cut(s) 410
AfaI GTAC 2 cut(s) 331, 406
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 5 cut(s) 130, 149, 272, 558, 620
AluBI AGCT 3 cut(s) 68, 476, 623
AluI AGCT 3 cut(s) 68, 476, 623
Alw26I GTCTC 3 cut(s) 411, 449, 591
AoxI GGCC 2 cut(s) 364, 570
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AseI ATTAAT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 571
BbrPI CACGTG 1 cut(s) 410
BccI CCATC 2 cut(s) 31, 582
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 3 cut(s) 411, 449, 591
BfaI CTAG 3 cut(s) 96, 333, 564
BfmI CTRYAG 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 394
BmcAI AGTACT 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 571
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 591
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 304
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 408, 444
BseNI ACTGG 1 cut(s) 360
BshFI GGCC 2 cut(s) 366, 572
BshVI ATCGAT 1 cut(s) 304
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 411, 449, 591
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 366, 572
Bso31I GGTCTC 1 cut(s) 591
Bsp143I GATC 2 cut(s) 496, 538
Bsp1720I GCTNAGC 1 cut(s) 394
BspANI GGCC 2 cut(s) 366, 572
BspCNI CTCAG 2 cut(s) 407, 445
BspDI ATCGAT 1 cut(s) 304
BspHI TCATGA 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 591
BsrI ACTGG 1 cut(s) 360
BssMI GATC 2 cut(s) 496, 538
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 171, 409
BstBAI YACGTR 1 cut(s) 410
BstDEI CTNAG 4 cut(s) 40, 394, 453, 477
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 2 cut(s) 499, 541
BstMAI GTCTC 3 cut(s) 411, 449, 591
BstMBI GATC 2 cut(s) 496, 538
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNSI RCATGY 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 2 cut(s) 366, 572
BsuTUI ATCGAT 1 cut(s) 304
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 367, 523
CciI TCATGA 1 cut(s) 641
Cfr13I GGNCC 1 cut(s) 571
ClaI ATCGAT 1 cut(s) 304
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 330, 405
CviAII CATG 4 cut(s) 8, 290, 548, 642
CviJI RGCY 9 cut(s) 68, 191, 366, 382, 398, 476, 572, 623, 632
CviKI_1 RGCY 9 cut(s) 68, 191, 366, 382, 398, 476, 572, 623, 632
CviQI GTAC 2 cut(s) 330, 405
DdeI CTNAG 4 cut(s) 40, 394, 453, 477
DpnI GATC 2 cut(s) 498, 540
DpnII GATC 2 cut(s) 496, 538
Eam1104I CTCTTC 2 cut(s) 171, 409
EarI CTCTTC 2 cut(s) 171, 409
Eco31I GGTCTC 1 cut(s) 591
Eco72I CACGTG 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 4 cut(s) 11, 293, 551, 645
FaqI GGGAC 1 cut(s) 389
FatI CATG 4 cut(s) 7, 289, 547, 641
FbaI TGATCA 1 cut(s) 538
FokI GGATG 1 cut(s) 71
FspBI CTAG 3 cut(s) 96, 333, 564
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 2 cut(s) 366, 572
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 224
Hin1II CATG 4 cut(s) 11, 293, 551, 645
HinfI GANTC 4 cut(s) 11, 179, 247, 638
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 239, 507, 642
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 287, 311, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 4 cut(s) 40, 394, 453, 477
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 4 cut(s) 11, 293, 551, 645
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 2 cut(s) 496, 538
LpnPI CCDG 5 cut(s) 30, 69, 364, 373, 520
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 96, 333, 564
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 2 cut(s) 296, 550
MalI GATC 2 cut(s) 498, 540
MboI GATC 2 cut(s) 496, 538
MboII GAAGA 5 cut(s) 185, 188, 197, 290, 426
MluCI AATT 7 cut(s) 101, 214, 242, 339, 486, 527, 612
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 158, 366
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 3 cut(s) 213, 338, 342
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 2 cut(s) 496, 538
NlaIII CATG 4 cut(s) 11, 293, 551, 645
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 293
PacI TTAATTAA 1 cut(s) 342
PagI TCATGA 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 3 cut(s) 11, 247, 638
PleI GAGTC 1 cut(s) 187
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
PpsI GAGTC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 338
PspCI CACGTG 1 cut(s) 410
PspPI GGNCC 1 cut(s) 571
RsaI GTAC 2 cut(s) 331, 406
RsaNI GTAC 2 cut(s) 330, 405
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 3 cut(s) 213, 338, 342
Sau3AI GATC 2 cut(s) 496, 538
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 188
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 546
Sse9I AATT 7 cut(s) 101, 214, 242, 339, 486, 527, 612
SspMI CTAG 3 cut(s) 96, 333, 564
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 304
TasI AATT 7 cut(s) 101, 214, 242, 339, 486, 527, 612
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 3 cut(s) 11, 247, 638
Tru1I TTAA 3 cut(s) 213, 338, 342
Tru9I TTAA 3 cut(s) 213, 338, 342
TscAI CASTG 2 cut(s) 367, 523
TseFI GTSAC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 6 cut(s) 24, 171, 212, 219, 497, 630
TspRI CASTG 2 cut(s) 367, 523
VspI ATTAAT 1 cut(s) 338
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 3 cut(s) 96, 333, 564
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.