RchiOBHm_Chr5g0078991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000325
Physical Location & Seq
Forward (+)
84777444 .. 84778124
681 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35348

Sequence Viewer

Length: 180 bp
ATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCGCTGGTACCCAAGTATCAATTTATGGTACAAGTGTAACTTTGCAAGATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATGCTAATTCTTCAGAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.38

Weight (kDa)

4.25

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 43, 64
AfeI AGCGCT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Aor51HI AGCGCT 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 38
BaeI ACNNNNGTAYC 6 cut(s) 33, 33, 54, 66, 66, 87
BanI GGYRCC 1 cut(s) 41
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
CfoI GCGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 42, 63
CviAII CATG 1 cut(s) 128
CviJI RGCY 2 cut(s) 87, 169
CviKI_1 RGCY 2 cut(s) 87, 169
CviQI GTAC 2 cut(s) 42, 63
DdeI CTNAG 1 cut(s) 32
Eco47III AGCGCT 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 131
FaiI YATR 2 cut(s) 60, 129
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 167
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 39
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 2 cut(s) 23, 124
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 14, 79
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 1 cut(s) 36
KpnI GGTACC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 4 cut(s) 24, 95, 122, 155
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 2 cut(s) 129, 164
MluCI AATT 3 cut(s) 54, 114, 133
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 23, 124
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 43, 64
RsaNI GTAC 2 cut(s) 42, 63
RseI CAYNNNNRTG 1 cut(s) 101
SatI GCNGC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 110
SetI ASST 1 cut(s) 171
SgeI CNNG 9 cut(s) 17, 32, 51, 59, 78, 92, 121, 122, 140
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 3 cut(s) 54, 114, 133
StyD4I CCNGG 1 cut(s) 108
TasI AATT 3 cut(s) 54, 114, 133
TfiI GAWTC 2 cut(s) 23, 124
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 137, 165
XapI RAATTY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.