Rh5AG265900

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000325
Physical Location & Seq
Forward (+)
35001175 .. 35009374
8200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG265900.1

Sequence Viewer

Length: 786 bp
ATGGAACATGAATCTCCTGTGCCATCAAACTCAAAAAACTTAGCAATATCAACACCTGATGTGGAAGCTACAGATAGTTGTGATTGTCAAATATCTAGCAAATTGGATTTTGGGAGTGGTATAGACTTGAATGGTTATGTAGAAGTTGAAAATAATGAAGTTGGAGGTAGTGAAGAAGAGTCAGAAGAAGCCACAAAACCTAATGAAACGGTTTATTCTATTCATTCCAAAATGCGTCAAGAATTGATTCTTGTAGTTGTGGCCCTTCACAAGACATTAGCAGATGTTAAGACATCTTTAAAGAAAAAGATCAATCAAGAAGCACCTCAAGTTGCCTTACCGATCATCAATAGTGCACCTGAGGTTATTTCTGATGATTTTGATGATCATAAGGTCAGAGGAATCAAGGTTAAAGAAAGAATTGTTCGTAAGGAGGAATCTGTTAGACCAAAGAATGCTCTGGAAAAGCTCTTAGGAAACAAAAGGCATAAGAAAGAGGTAGATACTTCATCAAGACACCAAAGAGAACCAGAATTAGATCATTCCAATGTGAACTCCACGTGTATTCCTTCTACACAAGTTCAACTCTATTCGACACAACAAATGGAACTGCAAACACATCCTTCACTTGTTAATTCCACAAGTGCTCCTGCTTCACAAAATCAATTGAATGAAAAGAGGTTGAATAGACGGAGGAGCATAAGGATCAGGAGCAAGATGGTGTTAGAGATAGAGGAGGAGATGTGGGTGCATGGGACCCGTGTGAAAATAAGGTTGATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

261

Amino Acids

29.42

Weight (kDa)

6.33

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 713
AcvI CACGTG 1 cut(s) 561
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 5 cut(s) 130, 149, 584, 670, 685
AluBI AGCT 2 cut(s) 68, 469
AluI AGCT 2 cut(s) 68, 469
Alw21I GWGCWC 2 cut(s) 358, 649
Alw44I GTGCAC 1 cut(s) 354
AlwI GGATC 1 cut(s) 713
AoxI GGCC 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 262, 756
AvaII GGWCC 1 cut(s) 756
AxyI CCTNAGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 561
Bbv12I GWGCWC 2 cut(s) 358, 649
BccI CCATC 2 cut(s) 31, 712
BclI TGATCA 1 cut(s) 385
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 756
BmgT120I GGNCC 2 cut(s) 262, 756
BmiI GGNNCC 2 cut(s) 757, 758
BpuEI CTTGAG 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 561
BsaXI ACNNNNNCTCC 4 cut(s) 631, 661, 728, 758
Bse21I CCTNAGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 619
BseMII CTCAG 1 cut(s) 351
BseRI GAGGAG 3 cut(s) 709, 749, 752
BseSI GKGCMC 1 cut(s) 358
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 358, 649
BslFI GGGAC 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 769
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 358, 649
Bsp143I GATC 5 cut(s) 309, 342, 385, 538, 705
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 757, 758
BspPI GGATC 1 cut(s) 713
BssMI GATC 5 cut(s) 309, 342, 385, 538, 705
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 561
BstDEI CTNAG 3 cut(s) 40, 360, 472
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 5 cut(s) 312, 345, 388, 541, 708
BstMBI GATC 5 cut(s) 309, 342, 385, 538, 705
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 262, 756
CseI GACGC 1 cut(s) 224
CviAII CATG 2 cut(s) 8, 752
CviJI RGCY 5 cut(s) 68, 191, 263, 469, 783
CviKI_1 RGCY 5 cut(s) 68, 191, 263, 469, 783
DdeI CTNAG 3 cut(s) 40, 360, 472
DpnI GATC 5 cut(s) 311, 344, 387, 540, 707
DpnII GATC 5 cut(s) 309, 342, 385, 538, 705
DraI TTTAAA 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 756
Eco72I CACGTG 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 756
FaeI CATG 2 cut(s) 11, 755
FaiI YATR 7 cut(s) 9, 122, 138, 390, 489, 701, 753
FaqI GGGAC 1 cut(s) 769
FatI CATG 2 cut(s) 7, 751
FbaI TGATCA 1 cut(s) 385
FokI GGATG 1 cut(s) 606
FspBI CTAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 263
HgaI GACGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 11, 755
HinfI GANTC 5 cut(s) 11, 179, 247, 402, 437
Hpy166II GTNNAC 2 cut(s) 356, 553
Hpy188I TCNGA 3 cut(s) 184, 373, 398
Hpy188III TCNNGA 5 cut(s) 239, 317, 461, 513, 709
Hpy8I GTNNAC 2 cut(s) 356, 553
HpyAV CCTTC 3 cut(s) 275, 579, 633
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 3 cut(s) 356, 613, 751
HpyF3I CTNAG 3 cut(s) 40, 360, 472
HpySE526I ACGT 1 cut(s) 560
Hsp92II CATG 2 cut(s) 11, 755
KflI GGGWCCC 1 cut(s) 756
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 309, 342, 385, 538, 705
LmnI GCTCC 3 cut(s) 652, 696, 711
LpnPI CCDG 7 cut(s) 30, 69, 372, 446, 543, 663, 694
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 560
MalI GATC 5 cut(s) 311, 344, 387, 540, 707
MboI GATC 5 cut(s) 309, 342, 385, 538, 705
MboII GAAGA 3 cut(s) 185, 188, 197
MfeI CAATTG 1 cut(s) 665
MhlI GDGCHC 2 cut(s) 358, 649
MluCI AATT 6 cut(s) 101, 242, 420, 533, 634, 665
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 4 cut(s) 288, 299, 411, 633
MslI CAYNNNNRTG 1 cut(s) 546
MunI CAATTG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 460
NdeII GATC 5 cut(s) 309, 342, 385, 538, 705
NlaIII CATG 2 cut(s) 11, 755
NlaIV GGNNCC 2 cut(s) 757, 758
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 4 cut(s) 11, 247, 402, 437
PleI GAGTC 1 cut(s) 187
PmaCI CACGTG 1 cut(s) 561
PmlI CACGTG 1 cut(s) 561
PpsI GAGTC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 561
PpuMI RGGWCCY 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 756
PspCI CACGTG 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 757, 758
PspPI GGNCC 2 cut(s) 262, 756
PspPPI RGGWCCY 1 cut(s) 756
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 4 cut(s) 288, 299, 411, 633
Sau3AI GATC 5 cut(s) 309, 342, 385, 538, 705
Sau96I GGNCC 2 cut(s) 262, 756
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 2 cut(s) 358, 649
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 756
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 6 cut(s) 101, 242, 420, 533, 634, 665
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 563
TaqI TCGA 1 cut(s) 593
TasI AATT 6 cut(s) 101, 242, 420, 533, 634, 665
TfiI GAWTC 4 cut(s) 11, 247, 402, 437
Tru1I TTAA 4 cut(s) 288, 299, 411, 633
Tru9I TTAA 4 cut(s) 288, 299, 411, 633
TspDTI ATGAA 6 cut(s) 24, 171, 212, 219, 498, 687
TspGWI ACGGA 1 cut(s) 706
VneI GTGCAC 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.