Rh3CG230400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000325
Physical Location & Seq
Forward (+)
21742978 .. 21743798
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG230400.1

Sequence Viewer

Length: 534 bp
ATGAGTATTACTAGTTATCATCCTACTGAGGTTCACAATAATCCTAAGGAGTCGATTGGCAAACGGTATGGTTACTTGTGCCGCACTTCTCGTGATACTTTAACTGTTGCAGCAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATCACACTGAGAAAGAGGGGAGAAGTTCTAGTGATAGTAGAGAAGTGAATACTACTTTAGGTGAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTCCGTGGAGTTAAAAGAAAAGCTACAATTGGCCGTCCACGTTCCAGATTCAAAGACCCGATTGAACAAAAAAAGAGTAAGGTACCAAAGAAAACCACAAAAGCTCCCACAAGATGGAAAATACCCATGCAGGAATTTGAAAGCAACGGTGTCAGTTCAGAAACACAAGGAAATAGTGAACATGATGTTCAACTATCTGGTGTTTTGACTCAACTGTTGAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

8.38

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 420
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 2 cut(s) 440, 526
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 6 cut(s) 281, 358, 371, 446, 497, 526
AhlI ACTAGT 1 cut(s) 11
AluBI AGCT 2 cut(s) 329, 410
AluI AGCT 2 cut(s) 329, 410
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 440, 526
Asp718I GGTACC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 45
BanI GGYRCC 1 cut(s) 388
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 414
BceAI ACGGC 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 219
BisI GCNGC 2 cut(s) 82, 111
BlsI GCNGC 2 cut(s) 83, 112
BmiI GGNNCC 1 cut(s) 390
BmsI GCATC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse21I CCTNAGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 18, 189
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 420
BsnI GGCC 1 cut(s) 339
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 19, 190
BspLI GGNNCC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 310
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 4 cut(s) 66, 106, 455, 522
Bst6I CTCTTC 2 cut(s) 117, 255
BstDEI CTNAG 4 cut(s) 27, 45, 172, 198
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 389
CviAII CATG 3 cut(s) 143, 433, 488
CviJI RGCY 4 cut(s) 171, 329, 339, 410
CviKI_1 RGCY 4 cut(s) 171, 329, 339, 410
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 4 cut(s) 27, 45, 172, 198
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 117, 255
EarI CTCTTC 2 cut(s) 117, 255
Eco81I CCTNAGG 1 cut(s) 45
FaeI CATG 3 cut(s) 146, 436, 491
FaiI YATR 5 cut(s) 69, 138, 144, 434, 489
FatI CATG 3 cut(s) 142, 432, 487
Fnu4HI GCNGC 2 cut(s) 82, 111
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 2 cut(s) 82, 111
FspBI CTAG 2 cut(s) 12, 219
GluI GCNGC 2 cut(s) 82, 111
HaeIII GGCC 1 cut(s) 339
Hin1II CATG 3 cut(s) 146, 436, 491
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 3 cut(s) 50, 354, 514
HpaI GTTAAC 1 cut(s) 129
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 4 cut(s) 34, 129, 344, 485
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 2 cut(s) 92, 351
Hpy8I GTNNAC 4 cut(s) 34, 129, 344, 485
HpyCH4III ACNGT 4 cut(s) 66, 106, 455, 522
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 110, 140, 436
HpyF3I CTNAG 4 cut(s) 27, 45, 172, 198
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 3 cut(s) 146, 436, 491
KpnI GGTACC 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 3 cut(s) 364, 422, 489
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 12, 219
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 2 cut(s) 134, 272
MfeI CAATTG 2 cut(s) 303, 333
MluCI AATT 4 cut(s) 303, 333, 440, 526
MlyI GAGTC 2 cut(s) 59, 508
MnlI CCTC 4 cut(s) 22, 199, 256, 262
MseI TTAA 4 cut(s) 101, 128, 179, 318
MslI CAYNNNNRTG 1 cut(s) 145
MunI CAATTG 2 cut(s) 303, 333
NlaIII CATG 3 cut(s) 146, 436, 491
NlaIV GGNNCC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 420
PkrI GCNGC 2 cut(s) 83, 112
PleI GAGTC 2 cut(s) 58, 508
PpsI GAGTC 2 cut(s) 58, 508
PspN4I GGNNCC 1 cut(s) 390
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 4 cut(s) 101, 128, 179, 318
SatI GCNGC 2 cut(s) 82, 111
SchI GAGTC 2 cut(s) 59, 508
SetI ASST 7 cut(s) 33, 253, 267, 331, 349, 390, 412
SfaNI GCATC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 303, 333, 440, 526
SsiI CCGC 1 cut(s) 82
SspMI CTAG 2 cut(s) 12, 219
TaaI ACNGT 4 cut(s) 66, 106, 455, 522
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 53
TasI AATT 4 cut(s) 303, 333, 440, 526
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 4 cut(s) 101, 128, 179, 318
Tru9I TTAA 4 cut(s) 101, 128, 179, 318
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 135, 159
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 420
XapI RAATTY 2 cut(s) 440, 526
XspI CTAG 2 cut(s) 12, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.