FvH4_7g29093

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000325
Physical Location & Seq
Forward (+)
21513345 .. 21515150
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29093.t1

Sequence Viewer

Length: 1437 bp
ATGTCAGGGAAGAAACCAAAGACTATTCTAACTGATCAAGATGCAACAATTGTTGAGGCAATCAATTCAGTCTTGTCAGAAACAGACCATCATATATGTATATGGCAAATGTATGAAAATGCTCTCAAACACATTAGCCCCATGGTAAAAGATACCGAGTCTTTTGCCAATGACTTCAAGAGATGTATATACGAGCACAAAGATGAAGATGATTTTGTTTCTGCTTGGAGGGATATGCTAGATAACTATGATCTTCATCAAAATGACTGGTTAAAATGGATGTTTAGGGCACGCGAGAAGTGGGCTGTGGTGTATGGTTGGAATACTATTTTTGTTGAAATGGAAGGTGGACATTTGGTTGAAAGTTTATTTAATGATCTGAGAAATTACCTTCACTCTGACACTACTGTTCTTCAATTCTTTAAGCATTTTGAGAGGGTGGTGGATGAGCAACGGTCCAAAGAAAGAGAAGCTAGTGATGAAATGAACCGCTGTTTGCCAAGGCTAATGGGGAATGTGGTTATGTTAAAGCATGCAAGTAATGAATACACCCCAAGGGCATTTGAAGTGTTGCAGCAAGGATATGAGAAATGTTTAAATGTTGTTGTTAACCAATGTAGTCAGAATGGGTCATTGTTTGACCATGCCCTTAAAGTGTTGGATCACAGGAATATAAGGGTTCTTCCTGCCAAATATGTCTTGAAGAGATGGACAAAAGATGCCAGGTCAGGGAGGGCAAGATTGAGTGATGTCTCCACGGTTCATGATAACCCTAAGCTTACTGTGGCAAGCCGTTACAAAGATCTTAGCCACAGAATTCTGATGTTATCTACCAGGGCTTCTGAATCTGGGGAAGCATTTCAATACGCCGTAAGGCAACTTGACCAAGTGCTGGAAGGGGTTGAAAAAATTTTGACATTAAAACCTGGGGATGCTCAGGCTGTCACGTCAAGCATCACAGGTACAACTACTTTTGATATTGAGTATGCAGAAAATTTTCTAGATGAAAATGCTTTTGTAAATCAGGGTGAGAATGGTGTAAAAGGAGAAAATGAACAAGGGAGTGGTGTCCTCGACAGAGGTGAGTTCACGAATGCAGATGGAAATTTCTCTAGCACAGACAGAAATCAGATTTCAGATTCATCCCCGCAAAGTAATCATTCCTTCATTTCTCCGGAAGCCTTTACCGGAAATCCCATTGCACAGGGTTTGTACACTTTTGAAGCGAGCCCTGCAAACAATTGCATGTACGCACAAGCTAATGCCACCTTACTTCAACCTCCAAACATCTTTCCTAACCAACATGATTCACCTTCCCTTTTGCAATTGTTTCAGGAACCTTTGATCAATGGCACATACCAAGAGCCTGTATCTGAACCGAGGCAGGCAATGGATCTTGATCTCCACCGTCCACATTCACCTTCATTCTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

479

Amino Acids

54.53

Weight (kDa)

5.3

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 1 - 40 4.7e-06 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 892
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 1174
AciI CCGC 2 cut(s) 490, 1148
AclWI GGATC 2 cut(s) 669, 1401
AcsI RAATTY 4 cut(s) 816, 909, 994, 1105
AfaI GTAC 3 cut(s) 964, 1214, 1250
AfiI CCNNNNNNNGG 2 cut(s) 729, 892
AjiI CACGTC 1 cut(s) 948
AjnI CCWGG 3 cut(s) 722, 833, 925
AluBI AGCT 3 cut(s) 473, 778, 1259
AluI AGCT 3 cut(s) 473, 778, 1259
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 757
AlwI GGATC 2 cut(s) 669, 1401
Aor13HI TCCGGA 1 cut(s) 1174
ApeKI GCWGC 1 cut(s) 574
ApoI RAATTY 4 cut(s) 816, 909, 994, 1105
Asp700I GAANNNNTTC 2 cut(s) 858, 996
AspS9I GGNCC 1 cut(s) 456
AsuHPI GGTGA 4 cut(s) 1040, 1094, 1302, 1410
AvaII GGWCC 1 cut(s) 456
BaeGI GKGCMC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 1232
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 586
BccI CCATC 3 cut(s) 96, 702, 1094
BceAI ACGGC 2 cut(s) 777, 854
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 3 cut(s) 724, 835, 927
BclI TGATCA 2 cut(s) 34, 1344
BcoDI GTCTC 1 cut(s) 757
BfaI CTAG 4 cut(s) 239, 474, 1001, 1113
BglII AGATCT 1 cut(s) 802
BisI GCNGC 1 cut(s) 575
BlsI GCNGC 1 cut(s) 576
Bme1390I CCNGG 3 cut(s) 724, 835, 927
Bme18I GGWCC 1 cut(s) 456
BmgBI CACGTC 1 cut(s) 948
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 1338
BmrFI CCNGG 3 cut(s) 724, 835, 927
BmsI GCATC 4 cut(s) 31, 709, 922, 963
Bpu10I CCTNAGC 2 cut(s) 774, 936
BsaBI GATNNNNATC 2 cut(s) 255, 1398
BsaJI CCNNGG 7 cut(s) 141, 500, 554, 756, 834, 926, 1379
BsaWI WCCGGW 2 cut(s) 1174, 1187
Bsc4I CCNNNNNNNGG 2 cut(s) 729, 892
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 1197, 1395
Bse8I GATNNNNATC 2 cut(s) 255, 1398
BseAI TCCGGA 1 cut(s) 1174
BseBI CCWGG 3 cut(s) 724, 835, 927
BseDI CCNNGG 7 cut(s) 141, 500, 554, 756, 834, 926, 1379
BseGI GGATG 4 cut(s) 285, 451, 937, 1142
BseJI GATNNNNATC 2 cut(s) 255, 1398
BseLI CCNNNNNNNGG 2 cut(s) 729, 892
BseMI GCAATG 2 cut(s) 1197, 1395
BseMII CTCAG 2 cut(s) 371, 950
BseNI ACTGG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 1 cut(s) 586
Bsh1236I CGCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 1175, 1188
BslI CCNNNNNNNGG 2 cut(s) 729, 892
BsmAI GTCTC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 1099
Bsp1286I GDGCHC 3 cut(s) 198, 292, 1232
Bsp13I TCCGGA 1 cut(s) 1174
Bsp1407I TGTACA 1 cut(s) 1212
Bsp143I GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 2 cut(s) 490, 1148
BspCNI CTCAG 2 cut(s) 372, 949
BspEI TCCGGA 1 cut(s) 1174
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 1 cut(s) 1338
BspPI GGATC 2 cut(s) 669, 1401
BsrDI GCAATG 2 cut(s) 1197, 1395
BsrGI TGTACA 1 cut(s) 1212
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 7 cut(s) 141, 500, 554, 756, 834, 926, 1379
BssMI GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
BssT1I CCWWGG 3 cut(s) 141, 500, 554
Bst2UI CCWGG 3 cut(s) 724, 835, 927
Bst4CI ACNGT 5 cut(s) 409, 456, 760, 784, 1409
Bst6I CTCTTC 1 cut(s) 698
BstAUI TGTACA 1 cut(s) 1212
BstC8I GCNNGC 5 cut(s) 292, 534, 790, 1228, 1386
BstDEI CTNAG 4 cut(s) 380, 774, 806, 936
BstDSI CCRYGG 2 cut(s) 141, 756
BstF5I GGATG 4 cut(s) 285, 451, 937, 1142
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 8 cut(s) 37, 253, 379, 664, 805, 1347, 1396, 1402
BstMAI GTCTC 1 cut(s) 757
BstMBI GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
BstMWI GCNNNNNNNGC 1 cut(s) 1232
BstNI CCWGG 3 cut(s) 724, 835, 927
BstNSI RCATGY 2 cut(s) 536, 1249
BstSCI CCNGG 3 cut(s) 722, 833, 925
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 586
BstX2I RGATCY 2 cut(s) 802, 1393
BstYI RGATCY 2 cut(s) 802, 1393
BtgI CCRYGG 2 cut(s) 141, 756
BtrI CACGTC 1 cut(s) 948
BtsCI GGATG 4 cut(s) 285, 451, 937, 1142
Cac8I GCNNGC 5 cut(s) 292, 534, 790, 1228, 1386
CciI TCATGA 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 456
Csp6I GTAC 3 cut(s) 963, 1213, 1249
CviAII CATG 6 cut(s) 142, 533, 644, 764, 1246, 1304
CviQI GTAC 3 cut(s) 963, 1213, 1249
DdeI CTNAG 4 cut(s) 380, 774, 806, 936
DpnI GATC 8 cut(s) 36, 252, 378, 663, 804, 1346, 1395, 1401
DpnII GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
DraI TTTAAA 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 3 cut(s) 141, 500, 554
Eco24I GRGCYC 1 cut(s) 1232
Eco47I GGWCC 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 816
EcoRII CCWGG 3 cut(s) 722, 833, 925
EcoT14I CCWWGG 3 cut(s) 141, 500, 554
EcoT38I GRGCYC 1 cut(s) 1232
ErhI CCWWGG 3 cut(s) 141, 500, 554
FaeI CATG 6 cut(s) 145, 536, 647, 767, 1249, 1307
FatI CATG 6 cut(s) 141, 532, 643, 763, 1245, 1303
FauI CCCGC 1 cut(s) 1155
FbaI TGATCA 2 cut(s) 34, 1344
Fnu4HI GCNGC 1 cut(s) 575
FokI GGATG 4 cut(s) 292, 458, 944, 1129
FriOI GRGCYC 1 cut(s) 1232
Fsp4HI GCNGC 1 cut(s) 575
FspBI CTAG 4 cut(s) 239, 474, 1001, 1113
GluI GCNGC 1 cut(s) 575
HapII CCGG 2 cut(s) 1175, 1188
Hin1II CATG 6 cut(s) 145, 536, 647, 767, 1249, 1307
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 4 cut(s) 158, 845, 1139, 1307
HpaI GTTAAC 1 cut(s) 610
HpaII CCGG 2 cut(s) 1175, 1188
HphI GGTGA 4 cut(s) 1040, 1094, 1302, 1410
Hpy166II GTNNAC 5 cut(s) 350, 610, 1089, 1215, 1412
Hpy188III TCNNGA 9 cut(s) 38, 178, 700, 764, 1001, 1090, 1175, 1334, 1397
Hpy8I GTNNAC 5 cut(s) 350, 610, 1089, 1215, 1412
HpyAV CCTTC 6 cut(s) 338, 401, 890, 1174, 1323, 1431
HpyCH4III ACNGT 5 cut(s) 409, 456, 760, 784, 1409
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 9 cut(s) 44, 536, 574, 989, 1097, 1202, 1235, 1245, 1324
HpyF10VI GCNNNNNNNGC 1 cut(s) 1232
HpyF3I CTNAG 4 cut(s) 380, 774, 806, 936
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 6 cut(s) 145, 536, 647, 767, 1249, 1307
Kpn2I TCCGGA 1 cut(s) 1174
Ksp22I TGATCA 2 cut(s) 34, 1344
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 4 cut(s) 31, 709, 922, 963
MaeI CTAG 4 cut(s) 239, 474, 1001, 1113
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 2 cut(s) 794, 943
MalI GATC 8 cut(s) 36, 252, 378, 663, 804, 1346, 1395, 1401
MboI GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
MboII GAAGA 6 cut(s) 22, 218, 245, 404, 674, 715
MfeI CAATTG 3 cut(s) 48, 1240, 1325
MflI RGATCY 2 cut(s) 802, 1393
MhlI GDGCHC 3 cut(s) 198, 292, 1232
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 299, 639
MnlI CCTC 8 cut(s) 49, 222, 429, 726, 1073, 1082, 1290, 1374
MroI TCCGGA 1 cut(s) 1174
MroXI GAANNNNTTC 2 cut(s) 858, 996
MseI TTAA 8 cut(s) 272, 372, 423, 527, 596, 609, 651, 920
MslI CAYNNNNRTG 2 cut(s) 201, 261
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 2 cut(s) 1175, 1188
MspR9I CCNGG 3 cut(s) 724, 835, 927
MunI CAATTG 3 cut(s) 48, 1240, 1325
Mva1269I GAATGC 1 cut(s) 1099
MvaI CCWGG 3 cut(s) 724, 835, 927
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 1232
NcoI CCATGG 1 cut(s) 141
NdeII GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
NlaIII CATG 6 cut(s) 145, 536, 647, 767, 1249, 1307
NlaIV GGNNCC 1 cut(s) 1338
NmuCI GTSAC 1 cut(s) 943
NspI RCATGY 2 cut(s) 536, 1249
PaeI GCATGC 1 cut(s) 536
PagI TCATGA 1 cut(s) 763
PctI GAATGC 1 cut(s) 1099
PdmI GAANNNNTTC 2 cut(s) 858, 996
PfeI GAWTC 3 cut(s) 845, 1139, 1307
PflMI CCANNNNNTGG 1 cut(s) 892
PkrI GCNGC 1 cut(s) 576
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 722, 833, 925
PspGI CCWGG 3 cut(s) 722, 833, 925
PspN4I GGNNCC 1 cut(s) 1338
PspPI GGNCC 1 cut(s) 456
PsuI RGATCY 2 cut(s) 802, 1393
RsaI GTAC 3 cut(s) 964, 1214, 1250
RsaNI GTAC 3 cut(s) 963, 1213, 1249
RseI CAYNNNNRTG 2 cut(s) 201, 261
SaqAI TTAA 8 cut(s) 272, 372, 423, 527, 596, 609, 651, 920
SatI GCNGC 1 cut(s) 575
Sau3AI GATC 8 cut(s) 34, 250, 376, 661, 802, 1344, 1393, 1399
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 3 cut(s) 724, 835, 927
SduI GDGCHC 3 cut(s) 198, 292, 1232
SfaNI GCATC 4 cut(s) 31, 709, 922, 963
SinI GGWCC 1 cut(s) 456
SmiMI CAYNNNNRTG 2 cut(s) 201, 261
SphI GCATGC 1 cut(s) 536
SsiI CCGC 2 cut(s) 490, 1148
SspMI CTAG 4 cut(s) 239, 474, 1001, 1113
StyD4I CCNGG 3 cut(s) 722, 833, 925
StyI CCWWGG 3 cut(s) 141, 500, 554
TaaI ACNGT 5 cut(s) 409, 456, 760, 784, 1409
TaiI ACGT 1 cut(s) 950
TaqI TCGA 1 cut(s) 1074
TatI WGTACW 1 cut(s) 1212
TfiI GAWTC 3 cut(s) 845, 1139, 1307
Tru1I TTAA 8 cut(s) 272, 372, 423, 527, 596, 609, 651, 920
Tru9I TTAA 8 cut(s) 272, 372, 423, 527, 596, 609, 651, 920
TseFI GTSAC 1 cut(s) 943
TseI GCWGC 1 cut(s) 574
Tsp45I GTSAC 1 cut(s) 943
Van91I CCANNNNNTGG 1 cut(s) 892
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 4 cut(s) 816, 909, 994, 1105
XbaI TCTAGA 1 cut(s) 1000
XceI RCATGY 2 cut(s) 536, 1249
XmnI GAANNNNTTC 2 cut(s) 858, 996
XspI CTAG 4 cut(s) 239, 474, 1001, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.