Rh1BG375400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000325
Physical Location & Seq
Forward (+)
50604039 .. 50605302
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG375400.1

Sequence Viewer

Length: 615 bp
ATGTTATCTACCAGGGCTTCTGAATCTGGGGAAGCATTTCAATTCGCTGTTAGACAACTCGACCAAGTGATGGAAGGGGTTGAGAAAATTTTGACATTAAAACCTGAGGATGCTCAAGCTGTCACATCAAGCAGCACAGGTACAACTACTTCTGATAATGAGCACGCAGAAACTTTTCTAGATGAGAATGCTTTTGAGAATCAGGGTGAGCATGGAGTAAATGGAGCAAACGAACAAGGGAGTGCTGTCCTTGACAGAGGTGATTTAATGAATGTAAATGGAAACTTCTCTAGCACAGACAGAATTCAGATTTCAGATGCATCCCCGCAAAGTAATCATTCCTACATTTCTTCGGAACCCTTAACCGGAAATCCCATTACACAGGGTTTGTACACTTTTGAAGAGAACCCTGTAGTCAATTGCACGTACGCGCAAGACAATGCCATCTTGTTTCGACCACCAAACATCTTTCCTAACCAACACGATTCACCTTCCCAGTTGCAATTGCTTCAGGAACCTCTTATCAATGGCACATACCAAGAACCCATATCTGAACTGAGGCAGGCAATGGATCTCGATCTCCACCCTCCACATTCACCTTCATTTTTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

204

Amino Acids

22.36

Weight (kDa)

4.26

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AccII CGCG 1 cut(s) 431
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 2 cut(s) 87, 303
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 3 cut(s) 142, 392, 428
AfiI CCNNNNNNNGG 2 cut(s) 70, 365
AgsI TTSAA 2 cut(s) 41, 401
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 165
AlwI GGATC 1 cut(s) 579
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 87, 303
Asp700I GAANNNNTTC 2 cut(s) 36, 174
AspLEI GCGC 1 cut(s) 433
AsuHPI GGTGA 4 cut(s) 218, 272, 480, 588
AxyI CCTNAGG 1 cut(s) 105
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 64, 452
BciT130I CCWGG 1 cut(s) 13
BfaI CTAG 2 cut(s) 179, 291
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 357, 516
BmrFI CCNGG 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 3 cut(s) 100, 307, 329
BmuI ACTGGG 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 365
Bse1I ACTGG 1 cut(s) 496
Bse21I CCTNAGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 115, 320
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 70, 365
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 96, 548
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 366
BsiWI CGTACG 1 cut(s) 426
BslI CCNNNNNNNGG 2 cut(s) 70, 365
BsmI GAATGC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 2 cut(s) 571, 577
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 97, 549
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 357, 516
BspPI GGATC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 571, 577
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 396
BstAUI TGTACA 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 165, 564
BstDEI CTNAG 2 cut(s) 105, 557
BstF5I GGATG 2 cut(s) 115, 320
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 2 cut(s) 574, 580
BstMBI GATC 2 cut(s) 571, 577
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 115, 320
Cac8I GCNNGC 2 cut(s) 165, 564
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 3 cut(s) 141, 391, 427
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 17, 119
CviKI_1 RGCY 2 cut(s) 17, 119
CviQI GTAC 3 cut(s) 141, 391, 427
DdeI CTNAG 2 cut(s) 105, 557
DpnI GATC 2 cut(s) 573, 579
DpnII GATC 2 cut(s) 571, 577
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 1 cut(s) 215
FaiI YATR 4 cut(s) 213, 535, 548, 613
FatI CATG 1 cut(s) 211
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 122, 307
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 2 cut(s) 179, 291
GlaI GCGC 1 cut(s) 432
GluI GCNGC 1 cut(s) 133
HapII CCGG 1 cut(s) 366
HhaI GCGC 1 cut(s) 433
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HinfI GANTC 3 cut(s) 23, 199, 485
HpaII CCGG 1 cut(s) 366
HphI GGTGA 4 cut(s) 218, 272, 480, 588
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 6 cut(s) 22, 154, 309, 316, 355, 553
Hpy188III TCNNGA 3 cut(s) 179, 512, 575
Hpy8I GTNNAC 1 cut(s) 393
HpyAV CCTTC 3 cut(s) 68, 501, 609
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 3 cut(s) 320, 423, 502
HpyF3I CTNAG 2 cut(s) 105, 557
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 2 cut(s) 571, 577
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 3 cut(s) 100, 307, 329
MaeI CTAG 2 cut(s) 179, 291
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 573, 579
MboI GATC 2 cut(s) 571, 577
MboII GAAGA 2 cut(s) 342, 413
MfeI CAATTG 2 cut(s) 418, 503
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 41, 87, 303, 418, 503
MnlI CCTC 5 cut(s) 100, 251, 528, 552, 597
Mph1103I ATGCAT 1 cut(s) 322
MroXI GAANNNNTTC 2 cut(s) 36, 174
MseI TTAA 3 cut(s) 98, 266, 362
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 2 cut(s) 418, 503
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 431
NdeII GATC 2 cut(s) 571, 577
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 357, 516
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 322
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 36, 174
PfeI GAWTC 3 cut(s) 23, 199, 485
Pfl23II CGTACG 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspLI CGTACG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 357, 516
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 3 cut(s) 142, 392, 428
RsaNI GTAC 3 cut(s) 141, 391, 427
SaqAI TTAA 3 cut(s) 98, 266, 362
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 571, 577
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 106, 121, 142, 262, 428, 493, 520, 601
SfaNI GCATC 3 cut(s) 100, 307, 329
SfcI CTRYAG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 41, 87, 303, 418, 503
SsiI CCGC 1 cut(s) 326
SspMI CTAG 2 cut(s) 179, 291
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 428
TaqI TCGA 3 cut(s) 60, 454, 576
TasI AATT 5 cut(s) 41, 87, 303, 418, 503
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 3 cut(s) 23, 199, 485
Tru1I TTAA 3 cut(s) 98, 266, 362
Tru9I TTAA 3 cut(s) 98, 266, 362
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 2 cut(s) 284, 591
Van91I CCANNNNNTGG 1 cut(s) 70
XapI RAATTY 2 cut(s) 87, 303
XbaI TCTAGA 1 cut(s) 178
XmnI GAANNNNTTC 2 cut(s) 36, 174
XspI CTAG 2 cut(s) 179, 291
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.