Rw0G013240

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00594
OG0000325
Physical Location & Seq
Forward (+)
25916 .. 27396
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013240.1

Sequence Viewer

Length: 1449 bp
ATGAAGCATATGTTAAAGATTAATCGAAGTTTCTCTAAAGCTAAAAAAGAACATGCTGATGCTGCTGAGATGTCAGGAATTTCAGCAAAAGCAACAGTTGAATTGATGAGTAGAGAAGTTAGGGGACGAGAGAATCCTCGTTTTATGGAAAAGGACCATCAGACTTACATACATCGAAACCGAAGGGTGAAGATGGAAAAAGGAGATGCTGGAGCTATATTGCAATACTTCCGAAAAATGAAAGAGGATAATTCATCTTCTTTTTATTCAATGCAACTTGATGAGAATGATATGATCACGAATATTTTTTGGGCAGATGAGCGTTCATCAGTAAGTGATTATGGTCTTTTTGGGGACGTCGTTTGTTTTGATATAACTTATCAGACTAATGAATATGGTAGACCATTTGCTCCATTTGTTGGGGTCAATCATCATAAGCAAACAGTGGTATTTGGTGCAACTTTATTATATGATGAAACCATTGAGTCCTTTAAGTGGCTTTTTGAGACTTTTCTTGGAGACCAATATGCAGCAATGGCTAGTGCAATAGCAGAAGTATTTCCTGTAACTTATCATAGACTATGTGTTTGGCATATTTACCAAAATGTTGCAAAGAGGTTAAGTCGTGTGTTTCACGGATCAGAACAATTTGCTCATGATTTTGGAAAGTATGTATATGACTATGAGGATGAAGATGATTGGTTATTGGCATGGAGTAATATGCTCGAGAAACACAATTTGAAGGAGGATAAATGGTTAAAGAATTTGTTTGATATGAGAAAAAAATGGGCATTGGTATATGGGCGGCATACTTTTACTGCAGATATGATGAGTACACAACGTAGTGAAAGTATGAATAATATTTTGAAAAAATACTTGAAGCCTAGTTATGACCTGTTGTGCCTCTTTGAACACTATGAGAGAGTTTTGGCTGTTCGACAATATGAAGAATTAATTGCTGATTTCAAGATGATGCAAACCTCTCCTGTGTTATCTGCTAACGTAGAGATGTTTCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTTATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATGCAAAGTATCTTTTCATGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCATTGAAAGTGTTGGATAGGAAGAATGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCATCTGTTATCATGGACCAAAGACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCGGTACAGGCATTTGTGTCGTAATTATCATGAGATTGCATCCTTTGCCGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

482

Amino Acids

56.78

Weight (kDa)

8.67

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 120 - 202 6.5e-20 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
AccB7I CCANNNNNTGG 1 cut(s) 419
AccI GTMKAC 2 cut(s) 400, 1034
AciI CCGC 3 cut(s) 805, 1393, 1440
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 3 cut(s) 78, 763, 1172
AcuI CTGAAG 1 cut(s) 1167
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 2 cut(s) 835, 1397
AfiI CCNNNNNNNGG 2 cut(s) 419, 495
AgsI TTSAA 9 cut(s) 101, 270, 742, 868, 880, 911, 967, 1016, 1252
AluBI AGCT 4 cut(s) 41, 215, 1046, 1322
AluI AGCT 4 cut(s) 41, 215, 1046, 1322
Alw26I GTCTC 2 cut(s) 500, 513
AlwI GGATC 1 cut(s) 646
Ama87I CYCGRG 2 cut(s) 725, 1155
ApeKI GCWGC 2 cut(s) 62, 530
ApoI RAATTY 3 cut(s) 78, 763, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 570, 602
AseI ATTAAT 2 cut(s) 21, 953
Asp700I GAANNNNTTC 1 cut(s) 558
AspS9I GGNCC 2 cut(s) 154, 1352
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 2 cut(s) 725, 1155
AvaII GGWCC 2 cut(s) 154, 1352
BbvI GCAGC 2 cut(s) 49, 542
BccI CCATC 3 cut(s) 165, 187, 1302
BceAI ACGGC 1 cut(s) 1224
BcgI CGANNNNNNTGC 2 cut(s) 1391, 1425
BclI TGATCA 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 500, 513
BfaI CTAG 2 cut(s) 540, 885
BfmI CTRYAG 1 cut(s) 819
BisI GCNGC 4 cut(s) 63, 531, 806, 1440
BlsI GCNGC 4 cut(s) 64, 532, 807, 1441
Bme18I GGWCC 2 cut(s) 154, 1352
BmeT110I CYCGRG 2 cut(s) 725, 1155
BmgT120I GGNCC 2 cut(s) 154, 1352
BmsI GCATC 6 cut(s) 49, 196, 963, 1168, 1344, 1439
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 1323
BpuEI CTTGAG 1 cut(s) 1358
Bsa29I ATCGAT 1 cut(s) 1306
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 513
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 495
Bse3DI GCAATG 1 cut(s) 540
BseCI ATCGAT 1 cut(s) 1306
BseGI GGATG 2 cut(s) 694, 1430
BseLI CCNNNNNNNGG 2 cut(s) 419, 495
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 57, 1104
BseRI GAGGAG 1 cut(s) 1040
BseXI GCAGC 2 cut(s) 49, 542
BshVI ATCGAT 1 cut(s) 1306
BsiHKCI CYCGRG 2 cut(s) 725, 1155
BslFI GGGAC 2 cut(s) 138, 368
BslI CCNNNNNNNGG 2 cut(s) 419, 495
BsmAI GTCTC 2 cut(s) 500, 513
BsmFI GGGAC 2 cut(s) 138, 368
BsmI GAATGC 1 cut(s) 1133
Bso31I GGTCTC 1 cut(s) 513
BsoBI CYCGRG 2 cut(s) 725, 1155
Bsp143I GATC 2 cut(s) 294, 638
BspACI CCGC 3 cut(s) 805, 1393, 1440
BspCNI CTCAG 2 cut(s) 58, 1105
BspDI ATCGAT 1 cut(s) 1306
BspHI TCATGA 2 cut(s) 655, 1420
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 540
BssMI GATC 2 cut(s) 294, 638
BssNAI GTATAC 1 cut(s) 1035
BssNI GRCGYC 1 cut(s) 357
Bst1107I GTATAC 1 cut(s) 1035
Bst4CI ACNGT 2 cut(s) 97, 445
Bst6I CTCTTC 1 cut(s) 1061
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 1436
BstDEI CTNAG 3 cut(s) 66, 1113, 1323
BstF5I GGATG 2 cut(s) 694, 1430
BstKTI GATC 2 cut(s) 297, 641
BstMAI GTCTC 2 cut(s) 500, 513
BstMBI GATC 2 cut(s) 294, 638
BstMWI GCNNNNNNNGC 4 cut(s) 62, 536, 1399, 1436
BstNSI RCATGY 2 cut(s) 56, 1022
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 2 cut(s) 49, 542
BstZ17I GTATAC 1 cut(s) 1035
Bsu15I ATCGAT 1 cut(s) 1306
BsuTUI ATCGAT 1 cut(s) 1306
BtsCI GGATG 2 cut(s) 694, 1430
BtsIMutI CAGTG 1 cut(s) 450
CciI TCATGA 2 cut(s) 655, 1420
Cfr13I GGNCC 2 cut(s) 154, 1352
ClaI ATCGAT 1 cut(s) 1306
Csp6I GTAC 2 cut(s) 834, 1396
CviAII CATG 9 cut(s) 53, 656, 711, 1019, 1145, 1210, 1244, 1349, 1421
CviJI RGCY 8 cut(s) 41, 215, 499, 539, 883, 932, 1046, 1322
CviKI_1 RGCY 8 cut(s) 41, 215, 499, 539, 883, 932, 1046, 1322
CviQI GTAC 2 cut(s) 834, 1396
DdeI CTNAG 3 cut(s) 66, 1113, 1323
DpnI GATC 2 cut(s) 296, 640
DpnII GATC 2 cut(s) 294, 638
Eam1104I CTCTTC 1 cut(s) 1061
EarI CTCTTC 1 cut(s) 1061
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 154, 1352
Eco57I CTGAAG 1 cut(s) 1167
Eco88I CYCGRG 2 cut(s) 725, 1155
EcoT22I ATGCAT 1 cut(s) 1249
FaeI CATG 9 cut(s) 56, 659, 714, 1022, 1148, 1213, 1247, 1352, 1424
FaqI GGGAC 2 cut(s) 138, 368
FatI CATG 9 cut(s) 52, 655, 710, 1018, 1144, 1209, 1243, 1348, 1420
FauNDI CATATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 294
FblI GTMKAC 2 cut(s) 400, 1034
Fnu4HI GCNGC 4 cut(s) 63, 531, 806, 1440
FokI GGATG 2 cut(s) 701, 1417
Fsp4HI GCNGC 4 cut(s) 63, 531, 806, 1440
FspBI CTAG 2 cut(s) 540, 885
GluI GCNGC 4 cut(s) 63, 531, 806, 1440
GsuI CTGGAG 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 9 cut(s) 56, 659, 714, 1022, 1148, 1213, 1247, 1352, 1424
HindIII AAGCTT 1 cut(s) 1044
HinfI GANTC 4 cut(s) 133, 485, 1053, 1281
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 401, 836, 1035
Hpy188I TCNGA 6 cut(s) 162, 233, 384, 643, 1114, 1186
Hpy188III TCNNGA 7 cut(s) 75, 298, 656, 727, 967, 1157, 1421
Hpy8I GTNNAC 3 cut(s) 401, 836, 1035
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 177, 736
HpyCH4III ACNGT 2 cut(s) 97, 445
HpyCH4IV ACGT 3 cut(s) 357, 841, 1002
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 536, 1399, 1436
HpyF3I CTNAG 3 cut(s) 66, 1113, 1323
HpySE526I ACGT 3 cut(s) 357, 841, 1002
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 9 cut(s) 56, 659, 714, 1022, 1148, 1213, 1247, 1352, 1424
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 2 cut(s) 294, 638
LmnI GCTCC 2 cut(s) 212, 415
LpnPI CCDG 8 cut(s) 60, 195, 576, 908, 999, 1053, 1073, 1384
Lsp1109I GCAGC 2 cut(s) 49, 542
LweI GCATC 6 cut(s) 49, 196, 963, 1168, 1344, 1439
MaeI CTAG 2 cut(s) 540, 885
MaeII ACGT 3 cut(s) 357, 841, 1002
MaeIII GTNAC 1 cut(s) 565
MalI GATC 2 cut(s) 296, 640
MboI GATC 2 cut(s) 294, 638
MboII GAAGA 7 cut(s) 202, 249, 704, 959, 1048, 1279, 1290
MlyI GAGTC 2 cut(s) 494, 1047
MmeI TCCRAC 1 cut(s) 1239
Mph1103I ATGCAT 1 cut(s) 1249
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 8 cut(s) 14, 21, 492, 620, 758, 953, 1218, 1301
MslI CAYNNNNRTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 1133
MwoI GCNNNNNNNGC 4 cut(s) 62, 536, 1399, 1436
NdeI CATATG 1 cut(s) 9
NdeII GATC 2 cut(s) 294, 638
NlaIII CATG 9 cut(s) 56, 659, 714, 1022, 1148, 1213, 1247, 1352, 1424
NsiI ATGCAT 1 cut(s) 1249
NspI RCATGY 2 cut(s) 56, 1022
PaeR7I CTCGAG 2 cut(s) 725, 1155
PagI TCATGA 2 cut(s) 655, 1420
PctI GAATGC 1 cut(s) 1133
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 133, 1281
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 4 cut(s) 64, 532, 807, 1441
PleI GAGTC 2 cut(s) 493, 1047
PpsI GAGTC 2 cut(s) 493, 1047
PshBI ATTAAT 2 cut(s) 21, 953
PspPI GGNCC 2 cut(s) 154, 1352
PstI CTGCAG 1 cut(s) 823
RsaI GTAC 2 cut(s) 835, 1397
RsaNI GTAC 2 cut(s) 834, 1396
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 8 cut(s) 14, 21, 492, 620, 758, 953, 1218, 1301
SatI GCNGC 4 cut(s) 63, 531, 806, 1440
Sau3AI GATC 2 cut(s) 294, 638
Sau96I GGNCC 2 cut(s) 154, 1352
SchI GAGTC 2 cut(s) 494, 1047
SfaNI GCATC 6 cut(s) 49, 196, 963, 1168, 1344, 1439
SfcI CTRYAG 1 cut(s) 819
Sfr274I CTCGAG 2 cut(s) 725, 1155
SinI GGWCC 2 cut(s) 154, 1352
SlaI CTCGAG 2 cut(s) 725, 1155
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 3 cut(s) 725, 1155, 1373
SmoI CTYRAG 3 cut(s) 725, 1155, 1373
SsiI CCGC 3 cut(s) 805, 1393, 1440
SspI AATATT 2 cut(s) 304, 862
SspMI CTAG 2 cut(s) 540, 885
TaaI ACNGT 2 cut(s) 97, 445
TaiI ACGT 3 cut(s) 360, 844, 1005
TaqI TCGA 7 cut(s) 25, 175, 726, 937, 1156, 1306, 1382
TatI WGTACW 1 cut(s) 833
TauI GCSGC 2 cut(s) 808, 1442
TfiI GAWTC 2 cut(s) 133, 1281
Tru1I TTAA 8 cut(s) 14, 21, 492, 620, 758, 953, 1218, 1301
Tru9I TTAA 8 cut(s) 14, 21, 492, 620, 758, 953, 1218, 1301
TscAI CASTG 1 cut(s) 450
TseI GCWGC 2 cut(s) 62, 530
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 1 cut(s) 450
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 154, 1352
VspI ATTAAT 2 cut(s) 21, 953
XapI RAATTY 3 cut(s) 78, 763, 1172
XceI RCATGY 2 cut(s) 56, 1022
XhoI CTCGAG 2 cut(s) 725, 1155
XmiI GTMKAC 2 cut(s) 400, 1034
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 2 cut(s) 540, 885
ZraI GACGTC 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.