Rmu_ssc0000400.1_g000102

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
Physical Location & Seq
Reverse (-)
389680 .. 391268
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000102.1.cds

Sequence Viewer

Length: 432 bp
atgaagtcaagggataccggtggtgttttggaatatctacaaagaatgcagttgaatgatccaaattttgtttatgcaatacaagtggatgaggatgatttgttaactaatattttctgggctgatgcaaagatgatggtagactatgattactttgtgacccttcacaagacattagcagatgttaaggcatctttaaagaaaaagatcaatcacgaagcacctcaagttgcctcaccgatcatcaatagtgcacctgaggttatttctgatgattttgatgatcataaggtcagaggaatcaaggttaaagaaagaattgttcgtcaggaggaatctgttagaccaaagaatgctctggaaaagttcttaggaaacaaaaggcataagaaagaggtagatacttcatcgagacaccaaagagaaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.58

Weight (kDa)

6.98

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 64
AgeI ACCGGT 1 cut(s) 17
AgsI TTSAA 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 406
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 1 cut(s) 53
ApaLI GTGCAC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 228
AxyI CCTNAGG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 1 cut(s) 130
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 406
BfuI GTATCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 115, 200
BpuEI CTTGAG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 17
Bse21I CCTNAGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 94, 100
BseMII CTCAG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 256
BshTI ACCGGT 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 406
BsmI GAATGC 2 cut(s) 51, 358
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 4 cut(s) 58, 207, 240, 283
BspCNI CTCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 4 cut(s) 58, 207, 240, 283
BstDEI CTNAG 2 cut(s) 258, 370
BstF5I GGATG 2 cut(s) 94, 100
BstKTI GATC 4 cut(s) 61, 210, 243, 286
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 4 cut(s) 58, 207, 240, 283
BstSLI GKGCMC 1 cut(s) 256
Bsu36I CCTNAGG 1 cut(s) 258
BsuI GTATCC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 94, 100
Cfr10I RCCGGY 1 cut(s) 17
CspAI ACCGGT 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
DdeI CTNAG 2 cut(s) 258, 370
DpnI GATC 4 cut(s) 60, 209, 242, 285
DpnII GATC 4 cut(s) 58, 207, 240, 283
DraI TTTAAA 1 cut(s) 198
Eco81I CCTNAGG 1 cut(s) 258
FaiI YATR 5 cut(s) 75, 147, 288, 387, 430
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 141
FokI GGATG 2 cut(s) 101, 107
HapII CCGG 1 cut(s) 18
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 2 cut(s) 300, 335
HpaI GTTAAC 1 cut(s) 105
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 3 cut(s) 105, 142, 254
Hpy188I TCNGA 2 cut(s) 271, 296
Hpy188III TCNNGA 4 cut(s) 215, 329, 359, 411
Hpy8I GTNNAC 3 cut(s) 105, 142, 254
HpyAV CCTTC 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 49, 77, 128, 254
HpyF3I CTNAG 2 cut(s) 258, 370
Ksp22I TGATCA 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 105
Kzo9I GATC 4 cut(s) 58, 207, 240, 283
LpnPI CCDG 5 cut(s) 31, 103, 270, 314, 344
LweI GCATC 2 cut(s) 115, 200
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 60, 209, 242, 285
MboI GATC 4 cut(s) 58, 207, 240, 283
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 2 cut(s) 64, 318
MnlI CCTC 7 cut(s) 85, 234, 244, 253, 290, 325, 388
MseI TTAA 4 cut(s) 104, 186, 197, 309
MspI CCGG 1 cut(s) 18
Mva1269I GAATGC 2 cut(s) 51, 358
NdeII GATC 4 cut(s) 58, 207, 240, 283
NmuCI GTSAC 1 cut(s) 157
PctI GAATGC 2 cut(s) 51, 358
PfeI GAWTC 2 cut(s) 300, 335
PinAI ACCGGT 1 cut(s) 17
SaqAI TTAA 4 cut(s) 104, 186, 197, 309
Sau3AI GATC 4 cut(s) 58, 207, 240, 283
SduI GDGCHC 1 cut(s) 256
SetI ASST 6 cut(s) 226, 259, 264, 294, 309, 399
SfaNI GCATC 2 cut(s) 115, 200
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 2 cut(s) 64, 318
SspI AATATT 1 cut(s) 112
TaqI TCGA 1 cut(s) 410
TasI AATT 2 cut(s) 64, 318
TfiI GAWTC 2 cut(s) 300, 335
Tru1I TTAA 4 cut(s) 104, 186, 197, 309
Tru9I TTAA 4 cut(s) 104, 186, 197, 309
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 17, 396
VneI GTGCAC 1 cut(s) 252
XapI RAATTY 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.