RchiOBHm_Chr5g0061941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000325
Physical Location & Seq
Reverse (-)
67516180 .. 67517235
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33827

Sequence Viewer

Length: 159 bp
ATGGGCAGCTTTAGGGCTGGGCGTGTGGACCCGAAAACCCGAGAACCCGGCCCGAACCGATCAAAAAAGCCCGATTCGGTTCGGTTTTGTATTGGAAAATTCCGGTTCGGTGCAAAGCCCGACCCGAATTACAATTTATCGGGTCGGTCTCGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.81

Weight (kDa)

11.29

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 98
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 2 cut(s) 39, 150
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 28, 50
AsuC2I CCSGG 1 cut(s) 48
AvaI CYCGRG 2 cut(s) 39, 150
AvaII GGWCC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 18
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 153
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 2 cut(s) 39, 150
BmgT120I GGNCC 2 cut(s) 28, 50
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 102
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 51
BsiHKCI CYCGRG 2 cut(s) 39, 150
BsiSI CCGG 2 cut(s) 48, 103
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 2 cut(s) 39, 150
Bsp143I GATC 1 cut(s) 59
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 153
BssMI GATC 1 cut(s) 59
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 28, 50
CviJI RGCY 6 cut(s) 9, 17, 51, 70, 118, 155
CviKI_1 RGCY 6 cut(s) 9, 17, 51, 70, 118, 155
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 28
Eco88I CYCGRG 2 cut(s) 39, 150
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 48, 103
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 48, 103
Hpy166II GTNNAC 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 113
Kzo9I GATC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 3, 61, 116
Lsp1109I GCAGC 1 cut(s) 18
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MluCI AATT 3 cut(s) 98, 127, 133
MspI CCGG 2 cut(s) 48, 103
MspR9I CCNGG 1 cut(s) 48
NciI CCSGG 1 cut(s) 48
NdeII GATC 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 28, 50
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 59
Sau96I GGNCC 2 cut(s) 28, 50
ScrFI CCNGG 1 cut(s) 48
SetI ASST 1 cut(s) 11
SinI GGWCC 1 cut(s) 28
Sse9I AATT 3 cut(s) 98, 127, 133
StyD4I CCNGG 1 cut(s) 46
TaqII GACCGA 1 cut(s) 135
TasI AATT 3 cut(s) 98, 127, 133
TfiI GAWTC 1 cut(s) 74
TseI GCWGC 1 cut(s) 6
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.