Rroxscaffold_1G00071290

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000325
Physical Location & Seq
Forward (+)
92164188 .. 92168034
3847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071290.1

Sequence Viewer

Length: 456 bp
ATGGAACACAAATCTCCTGTGCCATCAACACCGGATGTGGAAGCTACAGATAGTTGTGATTGTCAAATAACTAGAAAATTGGAATTTGGGAGTGGTATAGACTTGAATTGTTCTGTAGAAGTTGAAAATAATGAAGTTGGAGGTAGTGAAGAAAAGTCAGAAGAAGCCACAAAACCTAATGAAACGACTGATTCAATTCATTCTAGAATGCGTCAAGAATTGATTCCTGCAGTTGGTATGGAGTTTGAAACAGAACATGATGCAGATGCCTTTTACAATCAATATGCATATAGATTTGGTTTCAGTACCAGATTAAGTAAGGCACATAAATCCTCCAGTGTCCTATTGAGGGACAGGCTCTTTGTTTGCTCAGCCGAAGGTAAACGTGGAAGAGACAAGCGAAATCCCTACTCATATATTGAAATAGTTAGTGTGTTTACTATATTGATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

151

Amino Acids

17.0

Weight (kDa)

5.03

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 91 - 135 7.6e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 233, 349
AgsI TTSAA 5 cut(s) 106, 125, 195, 248, 422
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
Asp700I GAANNNNTTC 1 cut(s) 222
BccI CCATC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 2 cut(s) 72, 204
BfmI CTRYAG 3 cut(s) 45, 114, 228
BlpI GCTNAGC 1 cut(s) 370
BmsI GCATC 2 cut(s) 250, 256
BpmI CTGGAG 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 349
Bse1I ACTGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 233, 349
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 233, 349
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 213
Bsp1720I GCTNAGC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 383
BspMAI CTGCAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 387
BstSFI CTRYAG 3 cut(s) 45, 114, 228
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 343
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 257
CviJI RGCY 4 cut(s) 44, 167, 358, 374
CviKI_1 RGCY 4 cut(s) 44, 167, 358, 374
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 289
FaeI CATG 1 cut(s) 260
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 256
FokI GGATG 1 cut(s) 47
FspBI CTAG 2 cut(s) 72, 204
GsuI CTGGAG 1 cut(s) 319
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 260
HinfI GANTC 3 cut(s) 191, 223, 448
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 383, 438
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 204, 215
Hpy8I GTNNAC 2 cut(s) 383, 438
HpyAV CCTTC 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 230, 263, 287
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 1 cut(s) 260
LpnPI CCDG 6 cut(s) 30, 45, 240, 322, 340, 349
LweI GCATC 2 cut(s) 250, 256
MaeI CTAG 2 cut(s) 72, 204
MaeII ACGT 1 cut(s) 385
MboII GAAGA 3 cut(s) 161, 173, 402
MluCI AATT 5 cut(s) 77, 83, 106, 195, 218
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 134, 342, 343
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 314
MspI CCGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 213
NlaIII CATG 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 289
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 191, 223, 448
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 314
SetI ASST 5 cut(s) 46, 145, 178, 382, 388
SfaNI GCATC 2 cut(s) 250, 256
SfcI CTRYAG 3 cut(s) 45, 114, 228
Sse9I AATT 5 cut(s) 77, 83, 106, 195, 218
SspMI CTAG 2 cut(s) 72, 204
TaiI ACGT 1 cut(s) 388
TasI AATT 5 cut(s) 77, 83, 106, 195, 218
TfiI GAWTC 3 cut(s) 191, 223, 448
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 147, 188, 195
TspRI CASTG 1 cut(s) 343
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 72, 204
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.