Rh2BG502200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000325
Physical Location & Seq
Forward (+)
70834417 .. 70836056
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG502200.1

Sequence Viewer

Length: 252 bp
ATGTATTGCATCAATTCCATTTTACAGAAGCTTCTCAGTGGTGATAGTTTAGGCATGAATTTTCAAGCTAACAAGCCTCAACTAATGCCTTTTGCACAGCAAGTTCATTTTCCCCAGCAAAATCTGGGAGTGTACAATACTATAAGCAATTATCAGCAATTGCTCCAGAGACAATCCAAATTAGCAGCAAGCATGGAGAATGGCCATTTGGTCGAGACTGGGGAGAGGTTGCAATTTCACAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.51

Weight (kDa)

8.93

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 1 cut(s) 65
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 31, 68
AluI AGCT 2 cut(s) 31, 68
Alw26I GTCTC 2 cut(s) 163, 209
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 53
BalI TGGCCA 1 cut(s) 204
BbvI GCAGC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 163, 209
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 163, 209
BsnI GGCC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 132
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 163, 209
BstV1I GCAGC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 55, 193
CviJI RGCY 4 cut(s) 31, 68, 76, 204
CviKI_1 RGCY 4 cut(s) 31, 68, 76, 204
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 35
EaeI YGGCCR 1 cut(s) 202
FaeI CATG 2 cut(s) 58, 196
FaiI YATR 3 cut(s) 56, 143, 194
FatI CATG 2 cut(s) 54, 192
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 58, 196
HindIII AAGCTT 1 cut(s) 29
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 166, 214
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 9, 95, 232
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 2 cut(s) 58, 196
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 110, 128, 179, 204
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 18
MfeI CAATTG 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 7 cut(s) 13, 58, 148, 158, 179, 233, 247
MluNI TGGCCA 1 cut(s) 204
MnlI CCTC 2 cut(s) 87, 219
Mox20I TGGCCA 1 cut(s) 204
MscI TGGCCA 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 204
MunI CAATTG 1 cut(s) 158
NlaIII CATG 2 cut(s) 58, 196
PkrI GCNGC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 114
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 1 cut(s) 186
SetI ASST 3 cut(s) 33, 70, 230
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 7 cut(s) 13, 58, 148, 158, 179, 233, 247
TaqI TCGA 1 cut(s) 213
TasI AATT 7 cut(s) 13, 58, 148, 158, 179, 233, 247
TatI WGTACW 1 cut(s) 132
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 71, 95
TspRI CASTG 1 cut(s) 43
XapI RAATTY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.