Rh3CG246600

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000325
Physical Location & Seq
Reverse (-)
23773561 .. 23777131
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG246600.1

Sequence Viewer

Length: 966 bp
ATGGATACCATCTCTGACAAGAATGAAGAACTGATTGCGCTTGGACAGGAGGTTACAAAGAATATAGTATGTATAAATAATGAGCTGTTAAGTGGTAGAGAAGTTGCTTTTCCAGATGAGGATGAATTCGGTTTGCAAGGTTATGACGAGTTCAGTTTGCTGGGTGAGAATGGAATTGATTTGCAAGGTGAGGAACAAGATGATTTAGTAAGTGAGGAAGAAGATGATTTAGTAAGTGAGGATGAAGTTGATGTGCAAACTGAGGAGACTTTTCAATGTAATGATTCTTCTTTAAGTTCAAATGAAGACAAAGAGAAGAAAGAAGAACTATATATCGGAATGGAGTTTAGTTCTGATGAGAGCGCGTATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACGAACGAAGAGAAACAACAAGGGTTTGGTTGTAAGGTTGCTTTATTGTTGCTCAAAAGAAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCATTGAAAGTGTTGGATAGGAAGAACGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACTTGTTATCATGGACCAAAGACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCGGTACAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCGCAGAACATGAGGAATTAACAACGTATGCAGATGAATATGCCATCGAGTTGCTTAAAAATTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

321

Amino Acids

36.94

Weight (kDa)

4.95

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 216 - 242 7.8e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 491
AccII CGCG 1 cut(s) 365
AciI CCGC 2 cut(s) 850, 897
AcsI RAATTY 3 cut(s) 125, 629, 955
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 1 cut(s) 854
AgsI TTSAA 4 cut(s) 275, 300, 406, 709
AluBI AGCT 4 cut(s) 85, 374, 503, 779
AluI AGCT 4 cut(s) 85, 374, 503, 779
Alw26I GTCTC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 612
ApoI RAATTY 3 cut(s) 125, 629, 955
AspLEI GCGC 2 cut(s) 40, 365
AspS9I GGNCC 1 cut(s) 809
AsuHPI GGTGA 3 cut(s) 176, 200, 551
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 1 cut(s) 809
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 3 cut(s) 17, 759, 947
BceAI ACGGC 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 1 cut(s) 897
BlsI GCNGC 1 cut(s) 898
Bme18I GGWCC 1 cut(s) 809
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 809
BmsI GCATC 3 cut(s) 625, 801, 896
BpiI GAAGAC 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 815
Bsa29I ATCGAT 1 cut(s) 763
BseCI ATCGAT 1 cut(s) 763
BseGI GGATG 3 cut(s) 127, 247, 887
BseMII CTCAG 2 cut(s) 252, 561
BseRI GAGGAG 2 cut(s) 278, 497
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 763
BsiHKCI CYCGRG 1 cut(s) 612
BsmAI GTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 612
BspACI CCGC 2 cut(s) 850, 897
BspCNI CTCAG 2 cut(s) 253, 562
BspDI ATCGAT 1 cut(s) 763
BspFNI CGCG 1 cut(s) 365
BssNAI GTATAC 1 cut(s) 492
Bst1107I GTATAC 1 cut(s) 492
Bst6I CTCTTC 3 cut(s) 422, 474, 518
BstAPI GCANNNNNTGC 1 cut(s) 893
BstDEI CTNAG 3 cut(s) 261, 570, 780
BstF5I GGATG 3 cut(s) 127, 247, 887
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 2 cut(s) 40, 365
BstMAI GTCTC 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 371, 893
BstUI CGCG 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 312
BstZ17I GTATAC 1 cut(s) 492
Bsu15I ATCGAT 1 cut(s) 763
BsuTUI ATCGAT 1 cut(s) 763
BtsCI GGATG 3 cut(s) 127, 247, 887
CfoI GCGC 2 cut(s) 40, 365
Cfr13I GGNCC 1 cut(s) 809
ClaI ATCGAT 1 cut(s) 763
Csp6I GTAC 1 cut(s) 853
CviAII CATG 4 cut(s) 667, 701, 806, 905
CviJI RGCY 5 cut(s) 85, 374, 503, 779, 858
CviKI_1 RGCY 5 cut(s) 85, 374, 503, 779, 858
CviQI GTAC 1 cut(s) 853
DdeI CTNAG 3 cut(s) 261, 570, 780
Eam1104I CTCTTC 3 cut(s) 422, 474, 518
EarI CTCTTC 3 cut(s) 422, 474, 518
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 706
FaeI CATG 4 cut(s) 670, 704, 809, 908
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FatI CATG 4 cut(s) 666, 700, 805, 904
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 897
FokI GGATG 3 cut(s) 134, 254, 874
Fsp4HI GCNGC 1 cut(s) 897
GlaI GCGC 2 cut(s) 39, 364
GluI GCNGC 1 cut(s) 897
GsaI CCCAGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 40, 365
Hin1II CATG 4 cut(s) 670, 704, 809, 908
Hin6I GCGC 2 cut(s) 38, 363
HinP1I GCGC 2 cut(s) 38, 363
HindIII AAGCTT 2 cut(s) 372, 501
HinfI GANTC 3 cut(s) 284, 510, 738
HphI GGTGA 3 cut(s) 176, 200, 551
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 5 cut(s) 16, 338, 355, 571, 643
Hpy188III TCNNGA 3 cut(s) 113, 614, 878
Hpy8I GTNNAC 1 cut(s) 492
HpyCH4IV ACGT 2 cut(s) 729, 920
HpyCH4V TGCA 8 cut(s) 136, 184, 256, 666, 704, 753, 887, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 893
HpyF3I CTNAG 3 cut(s) 261, 570, 780
HpySE526I ACGT 2 cut(s) 729, 920
Hsp92II CATG 4 cut(s) 670, 704, 809, 908
HspAI GCGC 2 cut(s) 38, 363
LpnPI CCDG 6 cut(s) 32, 126, 146, 384, 510, 530
LweI GCATC 3 cut(s) 625, 801, 896
MaeII ACGT 2 cut(s) 729, 920
MaeIII GTNAC 1 cut(s) 52
MluCI AATT 7 cut(s) 125, 174, 629, 676, 871, 911, 955
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 1 cut(s) 696
Mph1103I ATGCAT 1 cut(s) 706
MseI TTAA 6 cut(s) 89, 293, 675, 758, 914, 951
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 371, 893
NlaIII CATG 4 cut(s) 670, 704, 809, 908
NsiI ATGCAT 1 cut(s) 706
PaeR7I CTCGAG 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PfeI GAWTC 2 cut(s) 284, 738
PkrI GCNGC 1 cut(s) 898
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PspFI CCCAGC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 809
RsaI GTAC 1 cut(s) 854
RsaNI GTAC 1 cut(s) 853
SaqAI TTAA 6 cut(s) 89, 293, 675, 758, 914, 951
SatI GCNGC 1 cut(s) 897
Sau96I GGNCC 1 cut(s) 809
SchI GAGTC 1 cut(s) 504
SfaNI GCATC 3 cut(s) 625, 801, 896
Sfr274I CTCGAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 809
SlaI CTCGAG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 612, 830
SmoI CTYRAG 2 cut(s) 612, 830
Sse9I AATT 7 cut(s) 125, 174, 629, 676, 871, 911, 955
SsiI CCGC 2 cut(s) 850, 897
TaiI ACGT 2 cut(s) 732, 923
TaqI TCGA 4 cut(s) 613, 763, 839, 942
TasI AATT 7 cut(s) 125, 174, 629, 676, 871, 911, 955
TauI GCSGC 1 cut(s) 899
TfiI GAWTC 2 cut(s) 284, 738
Tru1I TTAA 6 cut(s) 89, 293, 675, 758, 914, 951
Tru9I TTAA 6 cut(s) 89, 293, 675, 758, 914, 951
TspDTI ATGAA 9 cut(s) 39, 138, 258, 318, 590, 597, 683, 837, 945
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 3 cut(s) 125, 629, 955
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.