Rh6CG292800

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000325
Physical Location & Seq
Forward (+)
47052130 .. 47054114
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG292800.1

Sequence Viewer

Length: 621 bp
ATGTGGGTGGTTTTAGAGAGAGAGAAAGGAATTGAGGGAGAGCTCATGGACTTAGAAGATAATTGCAAAGAGGATGAAATTCAAACAAACTCACGTCGAAAGTTGGATTTTGAAAATGGAACTGACATGAACACTTGTGTGGAAGATGAAAGTCTGGAAGAAAAGGTGACAGAATTGAGACATGTTGAAGGTAATGAAAAAGTAGATTATGTTCATTCCAAAATTAGGAAAGAGTTGATTCCAATAATTGTAATGGAGTTTGACACAGAAAATGATGCATGTAGTTTTTACAATGCATATGCATATGGTGTTGGATTTTCTGTTAGAAGATTTAAATTTCATAAAGACAAAAGTGGCAAGTTTCTTGATAGGTTTTTTGTTTGCTCAGCTGAAGGCAAGCGTGATAGTGAAAAAGATCAACAATCTCTTAATGTCAAAGCTCATCGTGCTGAGACACGATTTGGTTGTTTAGCAAGGATGAAAATTAAGATTTGGAAGGCTAGTGGCAGATATCATGTTATTGAATTTGTTTCTGAGCATAATGGCCATGAGACTTCAAGTCCTTCTAAGAGCTATTTTTTTAGGTCTCATAGGAGTGTAAATACTGCACAAATAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

206

Amino Acids

24.02

Weight (kDa)

6.1

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 95 - 183 8.9e-20 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 3 cut(s) 78, 335, 524
AcuI CTGAAG 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 5 cut(s) 83, 113, 188, 524, 558
AhdI GACNNNNNGTC 1 cut(s) 558
AjiI CACGTC 1 cut(s) 95
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 5 cut(s) 43, 389, 440, 573, 617
AluI AGCT 5 cut(s) 43, 389, 440, 573, 617
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 4 cut(s) 172, 446, 545, 591
AoxI GGCC 1 cut(s) 544
ApoI RAATTY 3 cut(s) 78, 335, 524
AsuHPI GGTGA 1 cut(s) 178
BalI TGGCCA 1 cut(s) 546
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BcoDI GTCTC 4 cut(s) 172, 446, 545, 591
BfaI CTAG 1 cut(s) 501
BlpI GCTNAGC 1 cut(s) 385
BmeRI GACNNNNNGTC 1 cut(s) 558
BmgBI CACGTC 1 cut(s) 95
BmsI GCATC 1 cut(s) 265
Bpu1102I GCTNAGC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 79, 483
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 399, 441, 525
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 4 cut(s) 172, 446, 545, 591
BsnI GGCC 1 cut(s) 546
Bso31I GGTCTC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 415
Bsp1720I GCTNAGC 1 cut(s) 385
BspANI GGCC 1 cut(s) 546
BspCNI CTCAG 3 cut(s) 398, 442, 526
BspTNI GGTCTC 1 cut(s) 591
BssMI GATC 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 6 cut(s) 52, 385, 450, 534, 567, 618
BstF5I GGATG 2 cut(s) 79, 483
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 4 cut(s) 172, 446, 545, 591
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 446, 614
BstNSI RCATGY 2 cut(s) 185, 282
BsuRI GGCC 1 cut(s) 546
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 79, 483
Cac8I GCNNGC 1 cut(s) 398
CviAII CATG 6 cut(s) 46, 127, 182, 279, 515, 548
CviJI RGCY 7 cut(s) 43, 389, 440, 500, 546, 573, 617
CviKI_1 RGCY 7 cut(s) 43, 389, 440, 500, 546, 573, 617
DdeI CTNAG 6 cut(s) 52, 385, 450, 534, 567, 618
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
DraI TTTAAA 1 cut(s) 334
DriI GACNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 544
Eam1105I GACNNNNNGTC 1 cut(s) 558
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 591
Eco32I GATATC 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 43
EcoRV GATATC 1 cut(s) 512
EcoT22I ATGCAT 3 cut(s) 280, 298, 304
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 6 cut(s) 49, 130, 185, 282, 518, 551
FatI CATG 6 cut(s) 45, 126, 181, 278, 514, 547
FauNDI CATATG 2 cut(s) 298, 304
FokI GGATG 2 cut(s) 86, 490
FriOI GRGCYC 1 cut(s) 45
FspBI CTAG 1 cut(s) 501
HaeIII GGCC 1 cut(s) 546
Hin1II CATG 6 cut(s) 49, 130, 185, 282, 518, 551
HinfI GANTC 1 cut(s) 238
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 2 cut(s) 155, 365
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 4 cut(s) 182, 386, 490, 573
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 66, 278, 296, 302, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 614
HpyF3I CTNAG 6 cut(s) 52, 385, 450, 534, 567, 618
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 6 cut(s) 49, 130, 185, 282, 518, 551
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 1 cut(s) 140
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 4 cut(s) 68, 155, 170, 339
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 546
MluCI AATT 9 cut(s) 30, 61, 78, 173, 222, 246, 335, 483, 524
MluNI TGGCCA 1 cut(s) 546
MmeI TCCRAC 2 cut(s) 84, 292
MnlI CCTC 2 cut(s) 28, 64
Mox20I TGGCCA 1 cut(s) 546
Mph1103I ATGCAT 3 cut(s) 280, 298, 304
MscI TGGCCA 1 cut(s) 546
MseI TTAA 3 cut(s) 333, 429, 486
MslI CAYNNNNRTG 2 cut(s) 137, 594
Msp20I TGGCCA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 389
MwoI GCNNNNNNNGC 2 cut(s) 446, 614
NdeI CATATG 2 cut(s) 298, 304
NdeII GATC 1 cut(s) 415
NlaIII CATG 6 cut(s) 49, 130, 185, 282, 518, 551
NmuCI GTSAC 1 cut(s) 166
NsiI ATGCAT 3 cut(s) 280, 298, 304
NspI RCATGY 2 cut(s) 185, 282
OliI CACNNNNGTG 1 cut(s) 137
PciI ACATGT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 238
PscI ACATGT 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 45
PsrI GAACNNNNNNTAC 2 cut(s) 195, 227
PvuII CAGCTG 1 cut(s) 389
RseI CAYNNNNRTG 2 cut(s) 137, 594
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 333, 429, 486
Sau3AI GATC 1 cut(s) 415
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 1 cut(s) 265
SmiI ATTTAAAT 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 137, 594
Sse9I AATT 9 cut(s) 30, 61, 78, 173, 222, 246, 335, 483, 524
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 45
SwaI ATTTAAAT 1 cut(s) 334
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 97
TasI AATT 9 cut(s) 30, 61, 78, 173, 222, 246, 335, 483, 524
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 3 cut(s) 333, 429, 486
Tru9I TTAA 3 cut(s) 333, 429, 486
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 7 cut(s) 90, 143, 162, 203, 210, 329, 494
XapI RAATTY 3 cut(s) 78, 335, 524
XceI RCATGY 2 cut(s) 185, 282
XspI CTAG 1 cut(s) 501
Zsp2I ATGCAT 3 cut(s) 280, 298, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.