RLG00000036018

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000325
Physical Location & Seq
Reverse (-)
74973353 .. 74977293
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036018

Sequence Viewer

Length: 909 bp
ATGTTGGACTCTACGTCTTCCCCTGGTCCTCCTCCCTATCTATCACTCATGGACTTGGAAGATAATTGCAAAGAGGATGAAATTCAAACAAACTCACGTCGAAAGTTGGATTTTGAAAATGGAACTGACATGAACACTTGTGTGGAAGATGAAAGTTTGGAAGAAAAGATAGCAACAAGAGCTGCAGGGTCTAAAAGAGCCTATGAACTTTTTCTATCCAGATTGGACAGCATACGAGAAGATGTGGATACATGTTTGAAAGAAGAAGCCGAGGAAAACTCTACTCAACTGATTTCACCTACCACCAACAATGCATCAGAGCTTAATGAGGTGGTGTGTGTTGATGATCAAGTTAAAGGGATTAAAGTTAAAGAGAAACTTAAAGGTATTGGTTGTTCAACTAGGCCTAAAAATGCTCTAGAGAAGCTAACCATGGCAAAGAGGAGAAGACTTGAAAATAAAGATATGAACTCTTCATCTGTTGCTTCCAAAACTGCATCTACAATGCAAAGTCCTTCTATGACGCAAAGTGTTTCAGCGACACAACATTCTTCTTCTACACAGCCTCTTCTACCTCTTTCTATGCAAAGGGTTTCTAATGTGCAACTTACCTTGCCTCTGTCACAACATGTTCTGCCTTCAGCACCCTTATTGCAACTGGAACCTAATTGTGGTAAGTTAACAATGGACATGCCCATTAAAGAGAGAGAATTGGCTCAGCCTCCATTTATGCAGAAGCTTTCCAGTGGCAATAGTTTAGGCATGACTTTTCAAGCTAACAAGCCTCAACTAATGCCTTTTGCACCACAAGTTCATTTTCCCCAGAGACAATCCAAAGTAGCAGCAAGCATGGAGAATGGCCAGATGGTCAAGGCTAGGGAGTGGTTGCAATTTCGCAAGCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

303

Amino Acids

33.64

Weight (kDa)

6.37

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 624
AfiI CCNNNNNNNGG 1 cut(s) 671
AflIII ACRYGT 2 cut(s) 251, 628
AgsI TTSAA 6 cut(s) 86, 116, 259, 399, 455, 773
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 1 cut(s) 98
AjnI CCWGG 1 cut(s) 22
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 5 cut(s) 182, 322, 427, 739, 776
AluI AGCT 5 cut(s) 182, 322, 427, 739, 776
Alw26I GTCTC 1 cut(s) 820
AoxI GGCC 2 cut(s) 404, 859
ApeKI GCWGC 2 cut(s) 182, 842
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 861
BbsI GAAGAC 2 cut(s) 9, 454
BbvI GCAGC 2 cut(s) 169, 854
BccI CCATC 1 cut(s) 859
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 820
BfaI CTAG 3 cut(s) 402, 419, 876
BfmI CTRYAG 1 cut(s) 183
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 2 cut(s) 183, 843
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 2 cut(s) 184, 844
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 323, 506
BpiI GAAGAC 2 cut(s) 9, 454
BplI GAGNNNNNCTC 2 cut(s) 263, 295
Bpu1102I GCTNAGC 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 22, 270, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 663, 744
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 22, 270, 432
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 2 cut(s) 663, 744
BseRI GAGGAG 2 cut(s) 21, 457
BseXI GCAGC 2 cut(s) 169, 854
BshFI GGCC 2 cut(s) 406, 861
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 1 cut(s) 820
BsnI GGCC 2 cut(s) 406, 861
Bsp143I GATC 1 cut(s) 346
Bsp1720I GCTNAGC 1 cut(s) 717
Bsp19I CCATGG 1 cut(s) 432
BspANI GGCC 2 cut(s) 406, 861
BspCNI CTCAG 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 663
BspMAI CTGCAG 1 cut(s) 187
BsrI ACTGG 2 cut(s) 663, 744
BssECI CCNNGG 3 cut(s) 22, 270, 432
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 478, 573
BstC8I GCNNGC 2 cut(s) 847, 899
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 820
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 3 cut(s) 255, 632, 694
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 169, 854
BstV2I GAAGAC 2 cut(s) 9, 454
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 406, 861
BtgI CCRYGG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 2 cut(s) 847, 899
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 532
CviAII CATG 8 cut(s) 49, 130, 252, 433, 629, 691, 763, 850
DdeI CTNAG 1 cut(s) 717
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 478, 573
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 2 cut(s) 478, 573
Eco130I CCWWGG 1 cut(s) 432
Eco147I AGGCCT 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 432
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 8 cut(s) 52, 133, 255, 436, 632, 694, 766, 853
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 8 cut(s) 48, 129, 251, 432, 628, 690, 762, 849
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 183, 843
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 183, 843
FspBI CTAG 3 cut(s) 402, 419, 876
GluI GCNGC 2 cut(s) 183, 843
HaeIII GGCC 2 cut(s) 406, 861
HgaI GACGC 1 cut(s) 532
Hin1II CATG 8 cut(s) 52, 133, 255, 436, 632, 694, 766, 853
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 1 cut(s) 8
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 219, 419
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 525, 648
HpyCH4IV ACGT 2 cut(s) 14, 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 2 cut(s) 14, 97
Hsp92II CATG 8 cut(s) 52, 133, 255, 436, 632, 694, 766, 853
Ksp22I TGATCA 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 1 cut(s) 346
LpnPI CCDG 8 cut(s) 9, 36, 171, 232, 644, 757, 836, 875
Lsp1109I GCAGC 2 cut(s) 169, 854
LweI GCATC 2 cut(s) 323, 506
MaeI CTAG 3 cut(s) 402, 419, 876
MaeII ACGT 2 cut(s) 14, 97
MaeIII GTNAC 1 cut(s) 621
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 6 cut(s) 64, 81, 667, 710, 890, 904
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 861
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 210
MscI TGGCCA 1 cut(s) 861
MseI TTAA 7 cut(s) 324, 354, 363, 369, 381, 680, 699
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 861
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 432
NdeII GATC 1 cut(s) 346
NlaIII CATG 8 cut(s) 52, 133, 255, 436, 632, 694, 766, 853
NlaIV GGNNCC 1 cut(s) 663
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 621
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 3 cut(s) 255, 632, 694
OliI CACNNNNGTG 1 cut(s) 140
PceI AGGCCT 1 cut(s) 406
PciI ACATGT 2 cut(s) 251, 628
PdmI GAANNNNTTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 184, 844
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PscI ACATGT 2 cut(s) 251, 628
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 379, 411
PstI CTGCAG 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 7 cut(s) 324, 354, 363, 369, 381, 680, 699
SatI GCNGC 2 cut(s) 183, 843
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 24
SfaNI GCATC 2 cut(s) 323, 506
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 6 cut(s) 64, 81, 667, 710, 890, 904
SseBI AGGCCT 1 cut(s) 406
SspMI CTAG 3 cut(s) 402, 419, 876
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 432
TaiI ACGT 2 cut(s) 17, 100
TaqI TCGA 1 cut(s) 100
TasI AATT 6 cut(s) 64, 81, 667, 710, 890, 904
Tru1I TTAA 7 cut(s) 324, 354, 363, 369, 381, 680, 699
Tru9I TTAA 7 cut(s) 324, 354, 363, 369, 381, 680, 699
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 2 cut(s) 182, 842
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 7 cut(s) 93, 146, 165, 219, 465, 482, 803
TspRI CASTG 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 81
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 3 cut(s) 255, 632, 694
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 3 cut(s) 402, 419, 876
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.