Rh1AG416000

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000325
Physical Location & Seq
Forward (+)
64825014 .. 64827045
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG416000.1

Sequence Viewer

Length: 1407 bp
ATGGTAAACGATACCGGGTCTTTTGCCAATGATTTCAAGAGATGTATATACGACCACAAAGATGAAGATGATTTTGTTTCTGCTTGGGGGGATATGCTAGATAAATATGGTCTTCAGCAGAATGACTGGTTAAAATGGATGTTTAGAGCACGAGAGAAATGGGCTGTGGTGAATGGTAGGAATACTATTTTTGTTGACAAAGGCACACATTTGGTCGAAAGTTTATTTAATGATCTGAGAAGTTACCTATACTCTGACACTACTGTGGTTCAATTCTTTAAGCATTTTGAAAGGGTCGTGGATGAGCAACGGTCCAAAGAAATAGAAGCTAGCGATGAAATGAATAGCTGTTTGCCAAGGCTAATGGGGAATGTGGTTATGTTAAAGCATGCAAGTACTGTATACACCTCAAGGGCATTTGAAGTATTTCAGCAAGGATATGAGAAGTGTTTAAATGTTGTTGTCAACCAATGTAGTGAGAATGGGTCATTGTTTGAGTACAGAGCTAAAACATTTGGGAAAACTCAAGAACACAGCATCATATTCTGTTCCTCTGATGTTACAGTTATATGCAGTTGTAAGAAATTTGAGAGTGTTGGGTTTCTATGTAGCCATGCCCTTAAAGTGCTGGATCACAGGAATATAAAGGTACTCCCCACCAAATATGTCTTGAAGAGATGGACAAAAGATGCAAGGTTAGGGATTGCAAGACCGAGTGATGTCTCCACCGTCAATGATAACCCTAAGCTTATTGTGGCTAGCCGTTACAAAGATCTTAGCCACAGAATTCTGATGTTGTCTACCAGGGCTTCTGAATCTGGGGAAGCATTTCAATACGCTGTTAGACAACTCGACCAAGTGATGGAAGGGGTTGAGAAAATTTTGACATTAAAACCTGAGTATGCTCAAGCTGTCACGTCAAGCAGCACAGGTACAACTACTTCTGATAATGAGCATGCAGAAACTTTTCTAGATGAGAATGCTTTTGAGAATCAGGGTGAGAATGGAGTAGAAGGAGCAAACGAACTAGGGAGTGCTGTCCTCGACAGAGGTGAATTAATGAATGTAAATGGAAACTTCTCTAGCACAAACAGAATTCAGATTTCAGATGCATCCCCGCAAAGTAATCATTCCTACATTTCTTCGGAACCCTTAACCGGAAATCCCATTACACAGGGTTTGTACACTTTTGAAGAGAACCCTGTAGTCAATTGCACGTACGCGCAAGATAATGCCATCTTATTTCGACCTCCAAACATCTTTCCTAACCAACACGATTCACCTTCTCAGTTGCAATTGCTTCAGGAACCTCTTATCAACGGCACATACCAAGAACCCATATCTGAACTGAGGCAGGCAATGGATCTCGATCTCCACCCTCCACATTCACCTTCATTTTTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

468

Amino Acids

52.99

Weight (kDa)

5.26

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 862
AccI GTMKAC 2 cut(s) 402, 800
AccII CGCG 1 cut(s) 1223
AciI CCGC 1 cut(s) 1118
AclWI GGATC 2 cut(s) 639, 1371
AcsI RAATTY 4 cut(s) 584, 786, 879, 1095
AcuI CTGAAG 2 cut(s) 98, 1286
AfaI GTAC 6 cut(s) 397, 500, 651, 934, 1184, 1220
AfiI CCNNNNNNNGG 2 cut(s) 862, 1157
AgsI TTSAA 7 cut(s) 37, 272, 290, 422, 673, 833, 1193
AjiI CACGTC 1 cut(s) 918
AjnI CCWGG 1 cut(s) 803
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 5 cut(s) 329, 348, 506, 748, 911
AluI AGCT 5 cut(s) 329, 348, 506, 748, 911
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 2 cut(s) 639, 1371
ApeKI GCWGC 1 cut(s) 924
ApoI RAATTY 4 cut(s) 584, 786, 879, 1095
AseI ATTAAT 1 cut(s) 1058
Asp700I GAANNNNTTC 3 cut(s) 426, 828, 966
AspLEI GCGC 1 cut(s) 1225
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 5 cut(s) 181, 1010, 1064, 1272, 1380
AsuNHI GCTAGC 2 cut(s) 329, 758
AvaII GGWCC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 925, 957
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 936
BccI CCATC 3 cut(s) 672, 856, 1244
BceAI ACGGC 2 cut(s) 747, 1336
BciT130I CCWGG 1 cut(s) 805
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 6 cut(s) 98, 330, 759, 971, 1028, 1083
BfmI CTRYAG 1 cut(s) 1203
BglII AGATCT 1 cut(s) 772
BisI GCNGC 1 cut(s) 925
BlsI GCNGC 1 cut(s) 926
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 2 cut(s) 16, 805
Bme18I GGWCC 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 918
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 1149, 1308
BmrFI CCNGG 2 cut(s) 16, 805
BmsI GCATC 4 cut(s) 546, 679, 1099, 1121
BmtI GCTAGC 2 cut(s) 333, 762
BpiI GAAGAC 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 3 cut(s) 394, 510, 891
BpuMI CCSGG 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 1218
BsaBI GATNNNNATC 1 cut(s) 1368
BsaJI CCNNGG 2 cut(s) 356, 804
BsaWI WCCGGW 1 cut(s) 1157
Bsc4I CCNNNNNNNGG 2 cut(s) 862, 1157
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 1365
Bse8I GATNNNNATC 1 cut(s) 1368
BseBI CCWGG 1 cut(s) 805
BseDI CCNNGG 2 cut(s) 356, 804
BseGI GGATG 3 cut(s) 144, 307, 1112
BseJI GATNNNNATC 1 cut(s) 1368
BseLI CCNNNNNNNGG 2 cut(s) 862, 1157
BseMI GCAATG 1 cut(s) 1365
BseMII CTCAG 4 cut(s) 227, 888, 1301, 1340
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 936
Bsh1236I CGCG 1 cut(s) 1223
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 15, 1158
BsiWI CGTACG 1 cut(s) 1218
BslI CCNNNNNNNGG 2 cut(s) 862, 1157
BsmAI GTCTC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 985
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 5 cut(s) 232, 631, 772, 1363, 1369
BspACI CCGC 1 cut(s) 1118
BspCNI CTCAG 4 cut(s) 228, 889, 1300, 1341
BspFNI CGCG 1 cut(s) 1223
BspLI GGNNCC 2 cut(s) 1149, 1308
BspOI GCTAGC 2 cut(s) 333, 762
BspPI GGATC 2 cut(s) 639, 1371
BsrDI GCAATG 1 cut(s) 1365
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 356, 804
BssMI GATC 5 cut(s) 232, 631, 772, 1363, 1369
BssNAI GTATAC 1 cut(s) 403
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 356
Bst1107I GTATAC 1 cut(s) 403
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 805
Bst4CI ACNGT 5 cut(s) 265, 312, 400, 565, 730
Bst6I CTCTTC 2 cut(s) 668, 1188
BstAUI TGTACA 1 cut(s) 1182
BstBAI YACGTR 1 cut(s) 1218
BstC8I GCNNGC 5 cut(s) 331, 390, 760, 957, 1356
BstDEI CTNAG 6 cut(s) 236, 744, 776, 897, 1287, 1349
BstF5I GGATG 3 cut(s) 144, 307, 1112
BstFNI CGCG 1 cut(s) 1223
BstHHI GCGC 1 cut(s) 1225
BstKTI GATC 5 cut(s) 235, 634, 775, 1366, 1372
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 5 cut(s) 232, 631, 772, 1363, 1369
BstNI CCWGG 1 cut(s) 805
BstNSI RCATGY 2 cut(s) 392, 959
BstSCI CCNGG 2 cut(s) 14, 803
BstSFI CTRYAG 1 cut(s) 1203
BstUI CGCG 1 cut(s) 1223
BstV1I GCAGC 1 cut(s) 936
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 772, 1363
BstYI RGATCY 2 cut(s) 772, 1363
BstZ17I GTATAC 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 918
BtsCI GGATG 3 cut(s) 144, 307, 1112
Cac8I GCNNGC 5 cut(s) 331, 390, 760, 957, 1356
CfoI GCGC 1 cut(s) 1225
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 6 cut(s) 396, 499, 650, 933, 1183, 1219
CviAII CATG 3 cut(s) 389, 614, 956
CviQI GTAC 6 cut(s) 396, 499, 650, 933, 1183, 1219
DdeI CTNAG 6 cut(s) 236, 744, 776, 897, 1287, 1349
DpnI GATC 5 cut(s) 234, 633, 774, 1365, 1371
DpnII GATC 5 cut(s) 232, 631, 772, 1363, 1369
DraI TTTAAA 1 cut(s) 453
Eam1104I CTCTTC 2 cut(s) 668, 1188
EarI CTCTTC 2 cut(s) 668, 1188
Eco130I CCWWGG 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 98, 1286
EcoRI GAATTC 2 cut(s) 786, 1095
EcoRII CCWGG 1 cut(s) 803
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 1114
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 3 cut(s) 392, 617, 959
FatI CATG 3 cut(s) 388, 613, 955
FauI CCCGC 1 cut(s) 1125
FblI GTMKAC 2 cut(s) 402, 800
Fnu4HI GCNGC 1 cut(s) 925
FokI GGATG 3 cut(s) 151, 314, 1099
Fsp4HI GCNGC 1 cut(s) 925
FspBI CTAG 6 cut(s) 98, 330, 759, 971, 1028, 1083
GlaI GCGC 1 cut(s) 1224
GluI GCNGC 1 cut(s) 925
HapII CCGG 2 cut(s) 15, 1158
HhaI GCGC 1 cut(s) 1225
Hin1II CATG 3 cut(s) 392, 617, 959
Hin6I GCGC 1 cut(s) 1223
HinP1I GCGC 1 cut(s) 1223
HincII GTYRAC 2 cut(s) 196, 466
HindII GTYRAC 2 cut(s) 196, 466
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 3 cut(s) 815, 991, 1277
HpaII CCGG 2 cut(s) 15, 1158
HphI GGTGA 5 cut(s) 181, 1010, 1064, 1272, 1380
Hpy166II GTNNAC 6 cut(s) 7, 196, 403, 466, 801, 1185
Hpy188III TCNNGA 6 cut(s) 37, 527, 670, 971, 1304, 1367
Hpy8I GTNNAC 6 cut(s) 7, 196, 403, 466, 801, 1185
HpyAV CCTTC 4 cut(s) 860, 1007, 1293, 1401
HpyCH4III ACNGT 5 cut(s) 265, 312, 400, 565, 730
HpyCH4IV ACGT 2 cut(s) 917, 1217
HpyCH4V TGCA 8 cut(s) 392, 573, 692, 707, 959, 1112, 1215, 1294
HpyF3I CTNAG 6 cut(s) 236, 744, 776, 897, 1287, 1349
HpySE526I ACGT 2 cut(s) 917, 1217
Hsp92II CATG 3 cut(s) 392, 617, 959
HspAI GCGC 1 cut(s) 1223
Kzo9I GATC 5 cut(s) 232, 631, 772, 1363, 1369
LmnI GCTCC 1 cut(s) 1016
Lsp1109I GCAGC 1 cut(s) 936
LweI GCATC 4 cut(s) 546, 679, 1099, 1121
MaeI CTAG 6 cut(s) 98, 330, 759, 971, 1028, 1083
MaeII ACGT 2 cut(s) 917, 1217
MaeIII GTNAC 4 cut(s) 242, 559, 764, 913
MalI GATC 5 cut(s) 234, 633, 774, 1365, 1371
MboI GATC 5 cut(s) 232, 631, 772, 1363, 1369
MboII GAAGA 5 cut(s) 77, 104, 685, 1134, 1205
MfeI CAATTG 2 cut(s) 1210, 1295
MflI RGATCY 2 cut(s) 772, 1363
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 8 cut(s) 272, 584, 786, 879, 1055, 1095, 1210, 1295
MnlI CCTC 8 cut(s) 418, 562, 1043, 1052, 1260, 1320, 1344, 1389
Mph1103I ATGCAT 1 cut(s) 1114
MroXI GAANNNNTTC 3 cut(s) 426, 828, 966
MseI TTAA 9 cut(s) 131, 228, 279, 383, 452, 621, 890, 1058, 1154
MslI CAYNNNNRTG 2 cut(s) 60, 263
MspI CCGG 2 cut(s) 15, 1158
MspR9I CCNGG 2 cut(s) 16, 805
MunI CAATTG 2 cut(s) 1210, 1295
Mva1269I GAATGC 1 cut(s) 985
MvaI CCWGG 1 cut(s) 805
MvnI CGCG 1 cut(s) 1223
NciI CCSGG 1 cut(s) 16
NdeII GATC 5 cut(s) 232, 631, 772, 1363, 1369
NheI GCTAGC 2 cut(s) 329, 758
NlaIII CATG 3 cut(s) 392, 617, 959
NlaIV GGNNCC 2 cut(s) 1149, 1308
NmuCI GTSAC 1 cut(s) 913
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 2 cut(s) 392, 959
OliI CACNNNNGTG 1 cut(s) 263
PaeI GCATGC 2 cut(s) 392, 959
PctI GAATGC 1 cut(s) 985
PdmI GAANNNNTTC 3 cut(s) 426, 828, 966
PfeI GAWTC 3 cut(s) 815, 991, 1277
Pfl23II CGTACG 1 cut(s) 1218
PflMI CCANNNNNTGG 1 cut(s) 862
PkrI GCNGC 1 cut(s) 926
Ppu21I YACGTR 1 cut(s) 1218
PshBI ATTAAT 1 cut(s) 1058
Psp6I CCWGG 1 cut(s) 803
PspGI CCWGG 1 cut(s) 803
PspLI CGTACG 1 cut(s) 1218
PspN4I GGNNCC 2 cut(s) 1149, 1308
PspPI GGNCC 1 cut(s) 312
PsuI RGATCY 2 cut(s) 772, 1363
RsaI GTAC 6 cut(s) 397, 500, 651, 934, 1184, 1220
RsaNI GTAC 6 cut(s) 396, 499, 650, 933, 1183, 1219
RseI CAYNNNNRTG 2 cut(s) 60, 263
SaqAI TTAA 9 cut(s) 131, 228, 279, 383, 452, 621, 890, 1058, 1154
SatI GCNGC 1 cut(s) 925
Sau3AI GATC 5 cut(s) 232, 631, 772, 1363, 1369
Sau96I GGNCC 1 cut(s) 312
ScaI AGTACT 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 16, 805
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 4 cut(s) 546, 679, 1099, 1121
SfcI CTRYAG 1 cut(s) 1203
SinI GGWCC 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 60, 263
SmlI CTYRAG 3 cut(s) 409, 525, 906
SmoI CTYRAG 3 cut(s) 409, 525, 906
SphI GCATGC 2 cut(s) 392, 959
Sse9I AATT 8 cut(s) 272, 584, 786, 879, 1055, 1095, 1210, 1295
SsiI CCGC 1 cut(s) 1118
SspMI CTAG 6 cut(s) 98, 330, 759, 971, 1028, 1083
StyD4I CCNGG 2 cut(s) 14, 803
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 5 cut(s) 265, 312, 400, 565, 730
TaiI ACGT 2 cut(s) 920, 1220
TaqI TCGA 5 cut(s) 216, 852, 1044, 1246, 1368
TaqII GACCGA 1 cut(s) 727
TasI AATT 8 cut(s) 272, 584, 786, 879, 1055, 1095, 1210, 1295
TatI WGTACW 3 cut(s) 395, 498, 1182
TfiI GAWTC 3 cut(s) 815, 991, 1277
Tru1I TTAA 9 cut(s) 131, 228, 279, 383, 452, 621, 890, 1058, 1154
Tru9I TTAA 9 cut(s) 131, 228, 279, 383, 452, 621, 890, 1058, 1154
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 1 cut(s) 924
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 5 cut(s) 78, 351, 356, 1076, 1383
Van91I CCANNNNNTGG 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 312
VspI ATTAAT 1 cut(s) 1058
XapI RAATTY 4 cut(s) 584, 786, 879, 1095
XbaI TCTAGA 1 cut(s) 970
XceI RCATGY 2 cut(s) 392, 959
XmiI GTMKAC 2 cut(s) 402, 800
XmnI GAANNNNTTC 3 cut(s) 426, 828, 966
XspI CTAG 6 cut(s) 98, 330, 759, 971, 1028, 1083
ZrmI AGTACT 1 cut(s) 397
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.