Rmu_sc0001556.1_g000021

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001556.1
OG0000325
Physical Location & Seq
Forward (+)
93941 .. 95512
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001556.1_g000021.1.cds

Sequence Viewer

Length: 1572 bp
atgtctggtaagcaaccaatgaccattcttactgatcagtctgttgccatggctagagcaatgaaagaagtttttccacaagctactcatcgcttatgtgtgtggaatctttatcaaaatgctgctaagaatctcagtcatgtctttcatggatcttcagaatttgttgaagattttagcaattgcatgtatctctatgagtttgagcatgagtggctattagcatggaatgtacttcttgagaaatatggccatgctatgtctggtaagcaaccaatgaccattcttactgatcagtctgttgccatggctagagcaatgaaagaagtttttccacaagctacttatcgcttatgtgtgtggaatctttatcaaaatgctgctaagaatctcagtcatgtctttcatggatcttcagaatttgttgatgattttagcaattgcatgtatctctatgagtttgagcatgagtggctattagcatggaatgtacttcttgagaaatatggcctcaaggaaaacaagtggttgaataatttatttgaattgcgggaaaaatgggcactagtgtatgggagacatactttcactgccgatattaaaagcacacagctaagtgaatgcatgaataatgtgcttaagaaatatttgaagccagagcataatcttttgcggtttttggaacattatgaaagagttttggctgatcgaagatatcaagagttgattgctgaatataagatgatacaaacaactcatgtcttagcagtaaatgcacatatgctgcaacatggagcagaggtctatactccagaggttttcttgctgtttcagaaagaatttgtgagaattcataattattgtacttacaaggttggtaattctaggatgacattagagtatatagtatcatatagttctgaacataatgagcacttggtcaaatatgaagctttaacacaaaatgttaattgtagttgtaaaaagtttacgtttgttgggattttgtgtgttcatgcactaaaagtgcttgacaagaagaatgtgaagaagattccaccgcaatacattttaaagcaatggacaagagaagcaaaaattatgagtattactagttatcatcctactgagattcacggtaatcctaaggagtcgattggcagacggtatggctacttgtgccgcacttctcgtgatattttaaccgttgcagcagatgatgaagagttaactagatatgcacatgaatgtttggttgagatgctcaaaggcttagagttaataaagaaaaatcgcactgagaaagatgggagaagttctagtgatagcagcgaagtgaatactacttttggtcaaagtgaagatgttgagggaatagttcaatctaatgcttgtgaaacaacaattgttcgtggagttaaaagaaaagctacaattggttgtccacgtaccagattcaaagacccggccaaaaaaaaaagagtaaagtaccaaagaaaagcacaaaagctcccacaagaaggaaaattcccatgcaggtacaattctaatccttctattacgaataagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

523

Amino Acids

61.04

Weight (kDa)

8.93

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1527
AciI CCGC 4 cut(s) 550, 673, 1061, 1183
AclWI GGATC 2 cut(s) 160, 418
AcoI YGGCCR 2 cut(s) 250, 1467
AcsI RAATTY 5 cut(s) 161, 419, 839, 849, 1526
AcuI CTGAAG 2 cut(s) 141, 399
AfaI GTAC 6 cut(s) 234, 492, 865, 1450, 1490, 1541
AfiI CCNNNNNNNGG 1 cut(s) 1520
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 6 cut(s) 170, 532, 545, 652, 1382, 1459
AhlI ACTAGT 2 cut(s) 565, 1112
AluBI AGCT 6 cut(s) 83, 341, 613, 953, 1430, 1510
AluI AGCT 6 cut(s) 83, 341, 613, 953, 1430, 1510
Alw21I GWGCWC 1 cut(s) 936
Alw26I GTCTC 1 cut(s) 571
AlwI GGATC 2 cut(s) 160, 418
AoxI GGCC 3 cut(s) 250, 508, 1467
ApeKI GCWGC 5 cut(s) 122, 380, 784, 1211, 1329
ApoI RAATTY 5 cut(s) 161, 419, 839, 849, 1526
Asp700I GAANNNNTTC 2 cut(s) 72, 330
AsuC2I CCSGG 1 cut(s) 1466
AxyI CCTNAGG 1 cut(s) 1146
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 252
BauI CACGAG 1 cut(s) 1191
Bbv12I GWGCWC 1 cut(s) 936
BbvI GCAGC 5 cut(s) 109, 367, 771, 1223, 1341
BccI CCATC 1 cut(s) 1301
BclI TGATCA 2 cut(s) 34, 292
BcnI CCSGG 1 cut(s) 1466
BcoDI GTCTC 1 cut(s) 571
BcuI ACTAGT 2 cut(s) 565, 1112
BfaI CTAG 7 cut(s) 54, 312, 566, 885, 1113, 1233, 1320
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 1527
BisI GCNGC 6 cut(s) 123, 381, 785, 1183, 1212, 1330
BlsI GCNGC 6 cut(s) 124, 382, 786, 1184, 1213, 1331
Bme1390I CCNGG 1 cut(s) 1466
BmrFI CCNGG 1 cut(s) 1466
BmsI GCATC 1 cut(s) 1251
BpmI CTGGAG 1 cut(s) 795
BpuEI CTTGAG 3 cut(s) 260, 497, 518
BpuMI CCSGG 1 cut(s) 1466
BsaAI YACGTR 1 cut(s) 1448
BsaJI CCNNGG 2 cut(s) 48, 306
BsaXI ACNNNNNCTCC 4 cut(s) 786, 816, 1494, 1524
Bsc4I CCNNNNNNNGG 1 cut(s) 1520
Bse21I CCTNAGG 1 cut(s) 1146
Bse3DI GCAATG 3 cut(s) 66, 324, 1085
BseDI CCNNGG 2 cut(s) 48, 306
BseGI GGATG 2 cut(s) 894, 1120
BseLI CCNNNNNNNGG 1 cut(s) 1520
BseMI GCAATG 3 cut(s) 66, 324, 1085
BseMII CTCAG 4 cut(s) 148, 406, 1119, 1290
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 5 cut(s) 109, 367, 771, 1223, 1341
BshFI GGCC 3 cut(s) 252, 510, 1469
BsiHKAI GWGCWC 1 cut(s) 936
BsiSI CCGG 1 cut(s) 1466
BslI CCNNNNNNNGG 1 cut(s) 1520
BsmAI GTCTC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 3 cut(s) 252, 510, 1469
Bsp1286I GDGCHC 2 cut(s) 565, 936
Bsp143I GATC 5 cut(s) 34, 152, 292, 410, 706
Bsp19I CCATGG 2 cut(s) 48, 306
BspACI CCGC 4 cut(s) 550, 673, 1061, 1183
BspANI GGCC 3 cut(s) 252, 510, 1469
BspCNI CTCAG 4 cut(s) 147, 405, 1120, 1291
BspMI ACCTGC 1 cut(s) 1527
BspPI GGATC 2 cut(s) 160, 418
BspTI CTTAAG 1 cut(s) 638
BsrDI GCAATG 3 cut(s) 66, 324, 1085
BssECI CCNNGG 2 cut(s) 48, 306
BssMI GATC 5 cut(s) 34, 152, 292, 410, 706
BssSI CACGAG 1 cut(s) 1191
BssT1I CCWWGG 2 cut(s) 48, 306
Bst2BI CACGAG 1 cut(s) 1191
Bst4CI ACNGT 3 cut(s) 1139, 1167, 1207
Bst6I CTCTTC 1 cut(s) 1218
BstAFI CTTAAG 1 cut(s) 638
BstAPI GCANNNNNTGC 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 1448
BstDSI CCRYGG 2 cut(s) 48, 306
BstF5I GGATG 2 cut(s) 894, 1120
BstKTI GATC 5 cut(s) 37, 155, 295, 413, 709
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 5 cut(s) 34, 152, 292, 410, 706
BstMWI GCNNNNNNNGC 4 cut(s) 214, 472, 773, 1179
BstNSI RCATGY 2 cut(s) 190, 448
BstSCI CCNGG 1 cut(s) 1464
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 5 cut(s) 109, 367, 771, 1223, 1341
BstX2I RGATCY 2 cut(s) 152, 410
BstYI RGATCY 2 cut(s) 152, 410
Bsu36I CCTNAGG 1 cut(s) 1146
BsuRI GGCC 3 cut(s) 252, 510, 1469
BtgI CCRYGG 2 cut(s) 48, 306
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 894, 1120
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 2 cut(s) 588, 1296
BveI ACCTGC 1 cut(s) 1527
Csp6I GTAC 6 cut(s) 233, 491, 864, 1449, 1489, 1540
CviQI GTAC 6 cut(s) 233, 491, 864, 1449, 1489, 1540
DpnI GATC 5 cut(s) 36, 154, 294, 412, 708
DpnII GATC 5 cut(s) 34, 152, 292, 410, 706
DraI TTTAAA 1 cut(s) 1074
EaeI YGGCCR 2 cut(s) 250, 1467
Eam1104I CTCTTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1218
Eco130I CCWWGG 2 cut(s) 48, 306
Eco32I GATATC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 141, 399
Eco81I CCTNAGG 1 cut(s) 1146
EcoRI GAATTC 1 cut(s) 849
EcoRV GATATC 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 48, 306
EcoT22I ATGCAT 1 cut(s) 626
ErhI CCWWGG 2 cut(s) 48, 306
FauI CCCGC 1 cut(s) 543
FauNDI CATATG 1 cut(s) 780
FbaI TGATCA 2 cut(s) 34, 292
Fnu4HI GCNGC 6 cut(s) 123, 381, 785, 1183, 1212, 1330
FokI GGATG 2 cut(s) 901, 1107
Fsp4HI GCNGC 6 cut(s) 123, 381, 785, 1183, 1212, 1330
FspBI CTAG 7 cut(s) 54, 312, 566, 885, 1113, 1233, 1320
GluI GCNGC 6 cut(s) 123, 381, 785, 1183, 1212, 1330
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 3 cut(s) 252, 510, 1469
HapII CCGG 1 cut(s) 1466
HincII GTYRAC 1 cut(s) 1230
HindII GTYRAC 1 cut(s) 1230
HindIII AAGCTT 1 cut(s) 951
HinfI GANTC 8 cut(s) 106, 130, 364, 388, 1054, 1132, 1151, 1455
HpaI GTTAAC 1 cut(s) 1230
HpaII CCGG 1 cut(s) 1466
Hpy166II GTNNAC 3 cut(s) 990, 1230, 1445
Hpy188I TCNGA 4 cut(s) 160, 418, 834, 922
Hpy188III TCNNGA 5 cut(s) 239, 497, 719, 812, 1193
Hpy8I GTNNAC 3 cut(s) 990, 1230, 1445
HpyAV CCTTC 2 cut(s) 1514, 1563
HpyCH4III ACNGT 3 cut(s) 1139, 1167, 1207
HpyCH4IV ACGT 2 cut(s) 992, 1447
HpyCH4V TGCA 9 cut(s) 186, 444, 624, 776, 787, 1019, 1211, 1241, 1536
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 472, 773, 1179
HpySE526I ACGT 2 cut(s) 992, 1447
Ksp22I TGATCA 2 cut(s) 34, 292
KspAI GTTAAC 1 cut(s) 1230
Kzo9I GATC 5 cut(s) 34, 152, 292, 410, 706
LmnI GCTCC 2 cut(s) 794, 1515
LpnPI CCDG 6 cut(s) 249, 669, 825, 1465, 1479, 1522
Lsp1109I GCAGC 5 cut(s) 109, 367, 771, 1223, 1341
LweI GCATC 1 cut(s) 1251
MaeI CTAG 7 cut(s) 54, 312, 566, 885, 1113, 1233, 1320
MaeII ACGT 2 cut(s) 992, 1447
MalI GATC 5 cut(s) 36, 154, 294, 412, 708
MboI GATC 5 cut(s) 34, 152, 292, 410, 706
MboII GAAGA 9 cut(s) 147, 182, 405, 723, 1051, 1060, 1063, 1235, 1373
MfeI CAATTG 4 cut(s) 181, 439, 1404, 1434
MflI RGATCY 2 cut(s) 152, 410
MhlI GDGCHC 2 cut(s) 565, 936
MlsI TGGCCA 1 cut(s) 252
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 1 cut(s) 1160
MnlI CCTC 4 cut(s) 521, 793, 808, 1363
Mox20I TGGCCA 1 cut(s) 252
Mph1103I ATGCAT 1 cut(s) 626
MroXI GAANNNNTTC 2 cut(s) 72, 330
MscI TGGCCA 1 cut(s) 252
MseI TTAA 9 cut(s) 600, 639, 956, 969, 1073, 1202, 1229, 1280, 1419
MslI CAYNNNNRTG 1 cut(s) 1246
Msp20I TGGCCA 1 cut(s) 252
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 1466
MspR9I CCNGG 1 cut(s) 1466
MunI CAATTG 4 cut(s) 181, 439, 1404, 1434
Mva1269I GAATGC 1 cut(s) 626
MwoI GCNNNNNNNGC 4 cut(s) 214, 472, 773, 1179
NciI CCSGG 1 cut(s) 1466
NcoI CCATGG 2 cut(s) 48, 306
NdeI CATATG 1 cut(s) 780
NdeII GATC 5 cut(s) 34, 152, 292, 410, 706
NsiI ATGCAT 1 cut(s) 626
NspI RCATGY 2 cut(s) 190, 448
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 2 cut(s) 72, 330
PfeI GAWTC 7 cut(s) 106, 130, 364, 388, 1054, 1132, 1455
PkrI GCNGC 6 cut(s) 124, 382, 786, 1184, 1213, 1331
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
Ppu21I YACGTR 1 cut(s) 1448
PsuI RGATCY 2 cut(s) 152, 410
RsaI GTAC 6 cut(s) 234, 492, 865, 1450, 1490, 1541
RsaNI GTAC 6 cut(s) 233, 491, 864, 1449, 1489, 1540
RseI CAYNNNNRTG 1 cut(s) 1246
SaqAI TTAA 9 cut(s) 600, 639, 956, 969, 1073, 1202, 1229, 1280, 1419
SatI GCNGC 6 cut(s) 123, 381, 785, 1183, 1212, 1330
Sau3AI GATC 5 cut(s) 34, 152, 292, 410, 706
SchI GAGTC 1 cut(s) 1160
ScrFI CCNGG 1 cut(s) 1466
SduI GDGCHC 2 cut(s) 565, 936
SfaNI GCATC 1 cut(s) 1251
SmiMI CAYNNNNRTG 1 cut(s) 1246
SmlI CTYRAG 4 cut(s) 239, 497, 512, 638
SmoI CTYRAG 4 cut(s) 239, 497, 512, 638
SpeI ACTAGT 2 cut(s) 565, 1112
SsiI CCGC 4 cut(s) 550, 673, 1061, 1183
SspI AATATT 1 cut(s) 647
SspMI CTAG 7 cut(s) 54, 312, 566, 885, 1113, 1233, 1320
StyD4I CCNGG 1 cut(s) 1464
StyI CCWWGG 2 cut(s) 48, 306
TaaI ACNGT 3 cut(s) 1139, 1167, 1207
TaiI ACGT 2 cut(s) 995, 1450
TaqI TCGA 2 cut(s) 709, 1154
TatI WGTACW 3 cut(s) 232, 490, 863
TauI GCSGC 1 cut(s) 1185
TfiI GAWTC 7 cut(s) 106, 130, 364, 388, 1054, 1132, 1455
Tru1I TTAA 9 cut(s) 600, 639, 956, 969, 1073, 1202, 1229, 1280, 1419
Tru9I TTAA 9 cut(s) 600, 639, 956, 969, 1073, 1202, 1229, 1280, 1419
TscAI CASTG 2 cut(s) 595, 1303
TseI GCWGC 5 cut(s) 122, 380, 784, 1211, 1329
TspRI CASTG 2 cut(s) 595, 1303
Vha464I CTTAAG 1 cut(s) 638
XapI RAATTY 5 cut(s) 161, 419, 839, 849, 1526
XceI RCATGY 2 cut(s) 190, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 72, 330
XspI CTAG 7 cut(s) 54, 312, 566, 885, 1113, 1233, 1320
Zsp2I ATGCAT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.