RLG00000010632

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000325
Physical Location & Seq
Reverse (-)
3131251 .. 3135181
3931 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010632

Sequence Viewer

Length: 513 bp
ATGGATACCATCTCTGACAAGGATGAAGAACAGATTGTGCTTGGACAGGAGGTTACAAAGAATATAGTATGTAAAAATAATGAGCTGTTAAGTGGTAGAGAAGTTGCTCTTGCAGATGAGGATGAATTCAGTTTGCAAGGTTATGACGAGTTCAGTCTGCTGGGTGAGAATGGAATTGATTTGCAAGGTGAGGAACAAGATGATTTAGTAAGTGAGGAAGAAGATGATTTAGATTCTATTCCTATTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCGCTGGTACCCAAGTATCAGTTTATGGTACAAGTGTAACTTTGCAGAATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAGCAGCTGGGAAGTTGAAGATATGCAGAAAATTACTTTTTTATTTGTTGAATTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

4.05

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 125, 405
AfaI GTAC 2 cut(s) 334, 355
AfeI AGCGCT 1 cut(s) 328
AgsI TTSAA 3 cut(s) 411, 470, 503
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 2 cut(s) 85, 459
AluI AGCT 2 cut(s) 85, 459
Aor51HI AGCGCT 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 456
ApoI RAATTY 2 cut(s) 125, 405
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 176, 200
BaeI ACNNNNGTAYC 6 cut(s) 324, 324, 345, 357, 357, 378
BanI GGYRCC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 330
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 401
BseGI GGATG 2 cut(s) 28, 127
BseXI GCAGC 1 cut(s) 468
BseYI CCCAGC 2 cut(s) 160, 459
BshNI GGYRCC 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 28, 127
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 468
BtsCI GGATG 2 cut(s) 28, 127
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 333, 354
CviAII CATG 1 cut(s) 419
CviJI RGCY 3 cut(s) 85, 378, 459
CviKI_1 RGCY 3 cut(s) 85, 378, 459
CviQI GTAC 2 cut(s) 333, 354
DdeI CTNAG 1 cut(s) 323
Eco47III AGCGCT 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 399
FaeI CATG 1 cut(s) 422
FaiI YATR 7 cut(s) 65, 70, 144, 282, 351, 420, 476
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 349, 381
FatI CATG 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 2 cut(s) 35, 134
Fsp4HI GCNGC 1 cut(s) 457
GlaI GCGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 457
GsaI CCCAGC 2 cut(s) 164, 463
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 330
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 3 cut(s) 233, 314, 415
HphI GGTGA 2 cut(s) 176, 200
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 440
HpyCH4V TGCA 6 cut(s) 113, 136, 184, 305, 370, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 327
KpnI GGTACC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 6 cut(s) 32, 146, 315, 386, 413, 445
Lsp1109I GCAGC 1 cut(s) 468
MaeIII GTNAC 3 cut(s) 52, 248, 361
MboII GAAGA 6 cut(s) 38, 230, 233, 420, 455, 482
MfeI CAATTG 1 cut(s) 253
MluCI AATT 7 cut(s) 125, 174, 253, 405, 424, 483, 503
MnlI CCTC 4 cut(s) 43, 112, 184, 208
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 401
MunI CAATTG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 456
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 248
PfeI GAWTC 3 cut(s) 233, 314, 415
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 2 cut(s) 160, 459
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 2 cut(s) 334, 355
RsaNI GTAC 2 cut(s) 333, 354
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 401
SetI ASST 5 cut(s) 54, 87, 142, 190, 461
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 7 cut(s) 125, 174, 253, 405, 424, 483, 503
StyD4I CCNGG 1 cut(s) 399
TasI AATT 7 cut(s) 125, 174, 253, 405, 424, 483, 503
TfiI GAWTC 3 cut(s) 233, 314, 415
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 6 cut(s) 39, 138, 291, 297, 428, 456
XapI RAATTY 2 cut(s) 125, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.