Rh4CG101900

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000325
Physical Location & Seq
Forward (+)
18777767 .. 18784752
6986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG101900.1

Sequence Viewer

Length: 999 bp
ATGAGTATTACTAGTTATCATCCTACTGAGATTCACGGTAATCCTAAGGAGTCGATTGGCAGACGGTATGGCTACTTGTGTCGCACTTCTCGTGATATTTTAACCGTTGTAGCAGATGATGAAGAGTTAACGAGATATGCACATGAATGTTTGGTTGAGATGCTCAAAGGCTTAGAGTTAATAAAGAAAAATTGCACTGAGAAAGAAGGGAGAAGTTCTAGTGATAGCAGTGAAGTGAATACTACTTTTGGTCAAAGTGAAGAGGTTGAGGGAATAGTTCAATCTAATGCTTGTGAAACAACAATTGTCCGTGGAGTTAAAAGAAAAGCTACAATTGGCCGTCCACGTACCAGATTCAAAGACCCGGCCGAAAAAAAAAAGAGTAAAGTACCAAAGAAAAGCACAAAAGCTCCCACAAGAAGGAAAATTCCCATGCAGGAATTTGAAAGCATTTTGATCAGTTCAGAAACACACCAAAATAGTGAACATGATGTTCAACTATCTGGTGTTTTGACTCAAAGCCGAGATCTGTGTAGATCTGGAGATTTAGAGGTATGGGCATTTGGGTTAATGGATATTGGGGGTTTTCGATATTACTACAGAGTTTTCTTTTTCGTGGCAAATCTTGATCTACAGAGTGTGAGTGCTGTTTCTGCAGTGAGATTGATGAGAATAGAGATGGGAGAGCTCCCGGGTTTCGCACACGAGATAGAAGATCGTGATTTTAGACCGGTTCGCCTCCAAAATCTGATTGCTAAACTAAAGCAGCCGAGAGGGATAAATGATGCTCTTAGGGAGCTTTCGTCTCCAGGGAAGAGTGGCAGCTTCTTTTACTTGACTCAGGATGATAGATTCATGATAAAGACTGTCAAAAAATCAGAAGTCAAGTTTATTGTGGAATTCCATGGAATTCCATTTGAATTCCACCGGAATTTTGGTGTTGTATGCAAGAATGGCAGATTTCCTACAGATTTCAGCAATGAAGAACTCTTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

332

Amino Acids

37.9

Weight (kDa)

8.77

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIP5K PF01504 261 - 300 1.5e-14 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 337, 366
AcsI RAATTY 6 cut(s) 426, 440, 899, 909, 920, 931
AfaI GTAC 2 cut(s) 349, 390
AfiI CCNNNNNNNGG 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 730
AgsI TTSAA 5 cut(s) 281, 358, 446, 497, 920
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 808
AluBI AGCT 5 cut(s) 329, 410, 688, 799, 825
AluI AGCT 5 cut(s) 329, 410, 688, 799, 825
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 810
Ama87I CYCGRG 1 cut(s) 691
AoxI GGCC 2 cut(s) 337, 366
ApeKI GCWGC 2 cut(s) 766, 822
ApoI RAATTY 6 cut(s) 426, 440, 899, 909, 920, 931
AsiGI ACCGGT 1 cut(s) 730
AsuC2I CCSGG 3 cut(s) 365, 692, 693
AvaI CYCGRG 1 cut(s) 691
AxyI CCTNAGG 1 cut(s) 45
BanII GRGCYC 1 cut(s) 690
BauI CACGAG 2 cut(s) 90, 704
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 778, 834
BccI CCATC 1 cut(s) 673
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 810
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 3 cut(s) 365, 692, 693
BcoDI GTCTC 1 cut(s) 810
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 219
BfmI CTRYAG 4 cut(s) 598, 632, 654, 966
BglII AGATCT 2 cut(s) 526, 536
BisI GCNGC 2 cut(s) 767, 823
BlsI GCNGC 2 cut(s) 768, 824
Bme1390I CCNGG 4 cut(s) 365, 692, 693, 810
BmeT110I CYCGRG 1 cut(s) 691
BmrFI CCNGG 4 cut(s) 365, 692, 693, 810
BmsI GCATC 2 cut(s) 150, 775
BpmI CTGGAG 2 cut(s) 561, 792
BpuMI CCSGG 3 cut(s) 365, 692, 693
BsaAI YACGTR 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 310, 691, 809, 904
BsaWI WCCGGW 2 cut(s) 730, 927
BsaXI ACNNNNNCTCC 4 cut(s) 394, 424, 788, 818
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse118I RCCGGY 1 cut(s) 730
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 985
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 4 cut(s) 310, 691, 809, 904
BseGI GGATG 2 cut(s) 19, 850
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 1 cut(s) 985
BseMII CTCAG 3 cut(s) 18, 189, 854
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 778, 834
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 339, 368
BshTI ACCGGT 1 cut(s) 730
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 4 cut(s) 365, 692, 731, 928
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 810
BsmBI CGTCTC 1 cut(s) 810
BsnI GGCC 2 cut(s) 339, 368
BsoBI CYCGRG 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 5 cut(s) 456, 526, 536, 628, 715
Bsp19I CCATGG 1 cut(s) 904
BspANI GGCC 2 cut(s) 339, 368
BspCNI CTCAG 3 cut(s) 19, 190, 853
BspHI TCATGA 1 cut(s) 855
BspMAI CTGCAG 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 985
BsrFI RCCGGY 1 cut(s) 730
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 4 cut(s) 310, 691, 809, 904
BssMI GATC 5 cut(s) 456, 526, 536, 628, 715
BssSI CACGAG 2 cut(s) 90, 704
BssT1I CCWWGG 1 cut(s) 904
Bst2BI CACGAG 2 cut(s) 90, 704
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 4 cut(s) 38, 66, 106, 868
Bst6I CTCTTC 3 cut(s) 117, 255, 809
BstBAI YACGTR 1 cut(s) 347
BstDEI CTNAG 6 cut(s) 27, 45, 172, 198, 791, 840
BstDSI CCRYGG 2 cut(s) 310, 904
BstF5I GGATG 2 cut(s) 19, 850
BstKTI GATC 5 cut(s) 459, 529, 539, 631, 718
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 5 cut(s) 456, 526, 536, 628, 715
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 653, 954
BstNI CCWGG 1 cut(s) 810
BstSCI CCNGG 4 cut(s) 363, 690, 691, 808
BstSFI CTRYAG 4 cut(s) 598, 632, 654, 966
BstV1I GCAGC 2 cut(s) 778, 834
BstX2I RGATCY 2 cut(s) 526, 536
BstYI RGATCY 2 cut(s) 526, 536
BstZI CGGCCG 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 339, 368
BtgI CCRYGG 2 cut(s) 310, 904
BtsCI GGATG 2 cut(s) 19, 850
BtsI GCAGTG 2 cut(s) 235, 663
BtsIMutI CAGTG 3 cut(s) 195, 235, 663
CciI TCATGA 1 cut(s) 855
Cfr10I RCCGGY 1 cut(s) 730
Cfr9I CCCGGG 1 cut(s) 691
Csp6I GTAC 2 cut(s) 348, 389
CspAI ACCGGT 1 cut(s) 730
CviAII CATG 5 cut(s) 143, 433, 488, 856, 905
CviQI GTAC 2 cut(s) 348, 389
DdeI CTNAG 6 cut(s) 27, 45, 172, 198, 791, 840
DpnI GATC 5 cut(s) 458, 528, 538, 630, 717
DpnII GATC 5 cut(s) 456, 526, 536, 628, 715
EaeI YGGCCR 2 cut(s) 337, 366
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 3 cut(s) 117, 255, 809
EarI CTCTTC 3 cut(s) 117, 255, 809
Ecl136II GAGCTC 1 cut(s) 688
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 904
Eco24I GRGCYC 1 cut(s) 690
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 688
Eco81I CCTNAGG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 688
EcoRI GAATTC 3 cut(s) 899, 909, 920
EcoRII CCWGG 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 904
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 904
Esp3I CGTCTC 1 cut(s) 810
FaeI CATG 5 cut(s) 146, 436, 491, 859, 908
FaiI YATR 9 cut(s) 69, 138, 144, 434, 489, 556, 857, 906, 946
FatI CATG 5 cut(s) 142, 432, 487, 855, 904
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 767, 823
FokI GGATG 2 cut(s) 6, 857
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 2 cut(s) 767, 823
FspBI CTAG 2 cut(s) 12, 219
GluI GCNGC 2 cut(s) 767, 823
GsuI CTGGAG 2 cut(s) 561, 792
HaeIII GGCC 2 cut(s) 339, 368
HapII CCGG 4 cut(s) 365, 692, 731, 928
Hin1II CATG 5 cut(s) 146, 436, 491, 859, 908
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 6 cut(s) 31, 50, 354, 514, 838, 852
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 4 cut(s) 365, 692, 731, 928
Hpy166II GTNNAC 3 cut(s) 129, 344, 485
Hpy188I TCNGA 3 cut(s) 466, 750, 880
Hpy188III TCNNGA 6 cut(s) 92, 540, 626, 719, 842, 856
Hpy8I GTNNAC 3 cut(s) 129, 344, 485
HpyAV CCTTC 2 cut(s) 200, 414
HpyCH4III ACNGT 4 cut(s) 38, 66, 106, 868
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 5 cut(s) 140, 195, 436, 656, 948
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 954
HpyF3I CTNAG 6 cut(s) 27, 45, 172, 198, 791, 840
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 5 cut(s) 146, 436, 491, 859, 908
Ksp22I TGATCA 1 cut(s) 456
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 5 cut(s) 456, 526, 536, 628, 715
LmnI GCTCC 3 cut(s) 415, 693, 796
Lsp1109I GCAGC 2 cut(s) 778, 834
LweI GCATC 2 cut(s) 150, 775
MaeI CTAG 2 cut(s) 12, 219
MaeII ACGT 1 cut(s) 346
MalI GATC 5 cut(s) 458, 528, 538, 630, 717
MboI GATC 5 cut(s) 456, 526, 536, 628, 715
MboII GAAGA 5 cut(s) 134, 272, 725, 826, 995
MfeI CAATTG 2 cut(s) 303, 333
MflI RGATCY 2 cut(s) 526, 536
MhlI GDGCHC 1 cut(s) 690
MluCI AATT 9 cut(s) 190, 303, 333, 426, 440, 899, 909, 920, 931
MlyI GAGTC 3 cut(s) 59, 508, 832
MnlI CCTC 5 cut(s) 256, 262, 544, 749, 767
MseI TTAA 5 cut(s) 101, 128, 179, 318, 569
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 4 cut(s) 365, 692, 731, 928
MspR9I CCNGG 4 cut(s) 365, 692, 693, 810
MunI CAATTG 2 cut(s) 303, 333
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 2 cut(s) 653, 954
NciI CCSGG 3 cut(s) 365, 692, 693
NcoI CCATGG 1 cut(s) 904
NdeII GATC 5 cut(s) 456, 526, 536, 628, 715
NlaIII CATG 5 cut(s) 146, 436, 491, 859, 908
NmeAIII GCCGAG 2 cut(s) 548, 795
PagI TCATGA 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PfeI GAWTC 3 cut(s) 31, 354, 852
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 2 cut(s) 768, 824
PleI GAGTC 3 cut(s) 58, 508, 832
PpsI GAGTC 3 cut(s) 58, 508, 832
Ppu21I YACGTR 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 808
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 2 cut(s) 526, 536
RsaI GTAC 2 cut(s) 349, 390
RsaNI GTAC 2 cut(s) 348, 389
RseI CAYNNNNRTG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 5 cut(s) 101, 128, 179, 318, 569
SatI GCNGC 2 cut(s) 767, 823
Sau3AI GATC 5 cut(s) 456, 526, 536, 628, 715
SchI GAGTC 3 cut(s) 59, 508, 832
ScrFI CCNGG 4 cut(s) 365, 692, 693, 810
SduI GDGCHC 1 cut(s) 690
SetI ASST 8 cut(s) 267, 331, 349, 412, 555, 690, 801, 827
SfaNI GCATC 2 cut(s) 150, 775
SfcI CTRYAG 4 cut(s) 598, 632, 654, 966
SmaI CCCGGG 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 9 cut(s) 190, 303, 333, 426, 440, 899, 909, 920, 931
SspMI CTAG 2 cut(s) 12, 219
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 363, 690, 691, 808
StyI CCWWGG 1 cut(s) 904
TaaI ACNGT 4 cut(s) 38, 66, 106, 868
TaiI ACGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 53, 589
TasI AATT 9 cut(s) 190, 303, 333, 426, 440, 899, 909, 920, 931
TfiI GAWTC 3 cut(s) 31, 354, 852
Tru1I TTAA 5 cut(s) 101, 128, 179, 318, 569
Tru9I TTAA 5 cut(s) 101, 128, 179, 318, 569
TscAI CASTG 3 cut(s) 202, 235, 663
TseI GCWGC 2 cut(s) 766, 822
TspDTI ATGAA 4 cut(s) 135, 159, 844, 996
TspGWI ACGGA 1 cut(s) 299
TspMI CCCGGG 1 cut(s) 691
TspRI CASTG 3 cut(s) 202, 235, 663
XapI RAATTY 6 cut(s) 426, 440, 899, 909, 920, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 932
XmaI CCCGGG 1 cut(s) 691
XspI CTAG 2 cut(s) 12, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.