FvH4_7g29092

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000325
Physical Location & Seq
Forward (+)
21512289 .. 21513317
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29092.t1

Sequence Viewer

Length: 1029 bp
ATGCAATGTTCTTGTTACTATGAAGGGTCAATGGAGAGGGAGGAAGGTCATTTGATTAGTATTATTGATGAAACCATAGATTTTGGAGTTGAAACAAACAATAGTTTGGACTTGAATGTGGAGCAGGACTGTACCAACTCACAAATTGTTCATGAAAATGGCACTCTGTCCAATATATCCTCTACAAATGACCACAGTATCGATGCGGTTGTGAAAGTTGGTACAGAGTTTGAGTCCGATGAGCATGCTTACAGCTGTTATAACAAGTATGCTAAGTTGGTGGGTTTCAGTGTTCGGAAAGATTGGGTGAATAGGAGTAAGGTACATGGTCAGGTGGTATCTAGGAAGTTCACTTGTTCTAAAGAGGGTTATAGGCGAAGGGATAAAAGGGTTGTTAATGTAAAGAAACATCGAAAGGAAACAAGAACTGGTTGCCTGGCGCATATGATCATTACTCGTCAACCTGATTTTAAATATCGGATTTCACACATTGAAGAACAACACAATCATGAGAATGTAAACCCAAGTATGGCTCAAGCATTACCACCGCAGAGGGAATCCAGTATTTCTCAAGCTGCTGATGCTGAATTGGTAGAAGGTACCAAAGATTTCAGAACACTGTCAAAATTTGCATCTGAATCAGTGAATAAACAGTTTAGATTAAGTGAAGCTCTTGATAATGTCAATATAGGTTATGCCAATCATCTTCAATCTGAAAGGACCAGAGATATGAAGAAGGGAGAAGTTGGGAGTTTGCTGCATTACTTTCAAAGGCATCATGTTGAAAACCCATCCTTTTTTTATGCTTTACAGGTCGATAGTGATGATAAAGTTTGTAACATCTTTTGGGCTGATGATAAGATGGTATCAGATTATGATCATTTTGGCGATGTGGTTTGTCTGGACACAGTTTGCAGAACAGGCAAGAATTGTCTCCCATTTGTACAGTTTATAGGAGTAAACTATCACAAACAGGCAATGATCTTTGCTGCCGCACTTTTGTATGATGACACCATGGAATCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

343

Amino Acids

39.23

Weight (kDa)

5.89

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 87 - 171 6.3e-22 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24391 FvH4_2g38071 FvH4_3g07131 FvH4_3g22481 FvH4_4g15809 FvH4_5g37230 FvH4_7g25201 FvH4_7g29092 FvH4_7g29093
malus_domestica MD01G1197600.v1.1 MD17G1186900.v1.1
prunus_persica Prupe.1G227400_v2.0.a1 Prupe.2G291000_v2.0.a1 Prupe.4G268600_v2.0.a1 Prupe.5G094100_v2.0.a1
pyrus_communis pycom01g20780 pycom17g19620
rosa_chinensis RchiOBHm_Chr1g0376821 RchiOBHm_Chr5g0061941 RchiOBHm_Chr5g0078991 RchiOBHm_Chr6g0276821 RchiOBHm_Chr7g0191321
rosa_laevigata RLG00000007883 RLG00000008804 RLG00000010632 RLG00000026567 RLG00000035244 RLG00000036018 RLG00000036909
rosa_multiflora Rmu_sc0001036.1_g000026 Rmu_sc0001556.1_g000021 Rmu_sc0001974.1_g000022 Rmu_sc0002113.1_g000006 Rmu_sc0002572.1_g000008 Rmu_sc0004808.1_g000011 Rmu_sc0005117.1_g000017 Rmu_sc0005319.1_g000016 Rmu_sc0008432.1_g000005 Rmu_sc0010475.1_g000001 Rmu_sc0015522.1_g000003 Rmu_ssc0000066.1_g000009 Rmu_ssc0000400.1_g000102 Rmu_ssc0000400.1_g000103
rosa_roxburghii Rroxscaffold_1G00071290 Rroxscaffold_2G00141280 Rroxscaffold_3G00233790 Rroxscaffold_4G00297530 Rroxscaffold_5G00368860 Rroxscaffold_5G00386220 Rroxscaffold_7G00159400
rosa_rugosa Rorug01G0146800.1 Rorug01G0162100.1 Rorug01G0162200.1 Rorug01G0398600 Rorug01G0398700 Rorug02G0344200 Rorug02G0344300 Rorug02G0344400 Rorug03G0046200 Rorug03G0153200 Rorug04G0182500 Rorug04G0182600 Rorug05G0257700 Rorug05G0386400 Rorug05G0386400 Rorug05G0386500 Rorug05G0460900.1 Rorug05G0467000 Rorug07G0110400
rosa_samantha Rh1AG183500 Rh1AG416000 Rh1BG023600 Rh1BG145400 Rh1BG145500 Rh1BG278800 Rh1BG375400 Rh1CG389200 Rh1DG166300 Rh1DG176900 Rh1DG309900 Rh1DG406000 Rh2BG439100 Rh2BG502200 Rh2CG314800 Rh2CG517400 Rh2CG532000 Rh2DG449100 Rh3BG109900 Rh3CG230400 Rh3CG246600 Rh3CG289400 Rh3CG289500 Rh3DG120600 Rh4AG144400 Rh4AG408200 Rh4BG419300 Rh4CG101900 Rh4CG151000 Rh4CG226900 Rh4DG235400 Rh5AG265900 Rh5AG375200 Rh5CG559600 Rh5DG218200 Rh6AG074500 Rh6BG291800 Rh6CG292800 Rh6DG284900
rosa_wichuraiana Rw0G013240 Rw1G036490 Rw5G024920 Rw5G030730 Rw5G033710 Rw6G033840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 599
AciI CCGC 3 cut(s) 206, 548, 993
AcsI RAATTY 1 cut(s) 626
AfaI GTAC 5 cut(s) 133, 223, 324, 601, 945
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 6 cut(s) 92, 115, 494, 710, 770, 785
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 3 cut(s) 255, 575, 671
AluI AGCT 3 cut(s) 255, 575, 671
Alw26I GTCTC 1 cut(s) 938
ApeKI GCWGC 3 cut(s) 575, 757, 989
ApoI RAATTY 1 cut(s) 626
Asp718I GGTACC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 720
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 720
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanI GGYRCC 1 cut(s) 599
BbvI GCAGC 3 cut(s) 562, 744, 976
BccI CCATC 2 cut(s) 799, 856
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 437
BclI TGATCA 2 cut(s) 447, 877
BcoDI GTCTC 1 cut(s) 938
BfaI CTAG 1 cut(s) 342
BisI GCNGC 4 cut(s) 576, 758, 990, 993
BlsI GCNGC 4 cut(s) 577, 759, 991, 994
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 1 cut(s) 437
BmsI GCATC 4 cut(s) 193, 571, 641, 784
BpuEI CTTGAG 2 cut(s) 519, 555
Bsa29I ATCGAT 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 876
BsaJI CCNNGG 1 cut(s) 1014
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 2 cut(s) 433, 561
Bse3DI GCAATG 2 cut(s) 11, 984
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 1 cut(s) 437
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 1014
BseGI GGATG 1 cut(s) 791
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 2 cut(s) 11, 984
BseNI ACTGG 2 cut(s) 433, 561
BseXI GCAGC 3 cut(s) 562, 744, 976
BshNI GGYRCC 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 938
Bsp1407I TGTACA 1 cut(s) 943
Bsp143I GATC 3 cut(s) 447, 877, 981
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 3 cut(s) 206, 548, 993
BspDI ATCGAT 1 cut(s) 201
BspHI TCATGA 2 cut(s) 151, 508
BspLI GGNNCC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 11, 984
BsrGI TGTACA 1 cut(s) 943
BsrI ACTGG 2 cut(s) 433, 561
BssECI CCNNGG 1 cut(s) 1014
BssMI GATC 3 cut(s) 447, 877, 981
BssT1I CCWWGG 1 cut(s) 1014
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 6 cut(s) 131, 197, 621, 654, 910, 948
BstAUI TGTACA 1 cut(s) 943
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 1014
BstF5I GGATG 1 cut(s) 791
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 3 cut(s) 450, 880, 984
BstMAI GTCTC 1 cut(s) 938
BstMBI GATC 3 cut(s) 447, 877, 981
BstMWI GCNNNNNNNGC 2 cut(s) 581, 921
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 562, 744, 976
Bsu15I ATCGAT 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 1014
BtgZI GCGATG 1 cut(s) 903
BtsCI GGATG 1 cut(s) 791
BtsIMutI CAGTG 3 cut(s) 295, 617, 648
Cac8I GCNNGC 1 cut(s) 246
CciI TCATGA 2 cut(s) 151, 508
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 720
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 5 cut(s) 132, 222, 323, 600, 944
CviAII CATG 6 cut(s) 152, 245, 326, 509, 779, 1015
CviJI RGCY 5 cut(s) 255, 533, 575, 671, 851
CviKI_1 RGCY 5 cut(s) 255, 533, 575, 671, 851
CviQI GTAC 5 cut(s) 132, 222, 323, 600, 944
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 449, 879, 983
DpnII GATC 3 cut(s) 447, 877, 981
DraI TTTAAA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 1014
Eco47I GGWCC 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 1014
ErhI CCWWGG 1 cut(s) 1014
FaeI CATG 6 cut(s) 155, 248, 329, 512, 782, 1018
FatI CATG 6 cut(s) 151, 244, 325, 508, 778, 1014
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 2 cut(s) 447, 877
Fnu4HI GCNGC 4 cut(s) 576, 758, 990, 993
FokI GGATG 1 cut(s) 778
Fsp4HI GCNGC 4 cut(s) 576, 758, 990, 993
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 441
GluI GCNGC 4 cut(s) 576, 758, 990, 993
HhaI GCGC 1 cut(s) 442
Hin1II CATG 6 cut(s) 155, 248, 329, 512, 782, 1018
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HinfI GANTC 4 cut(s) 233, 557, 638, 1019
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 4 cut(s) 351, 461, 520, 961
Hpy188I TCNGA 7 cut(s) 238, 297, 480, 614, 637, 715, 871
Hpy188III TCNNGA 4 cut(s) 152, 509, 674, 902
Hpy8I GTNNAC 4 cut(s) 351, 461, 520, 961
HpyAV CCTTC 5 cut(s) 17, 38, 372, 590, 730
HpyCH4III ACNGT 6 cut(s) 131, 197, 621, 654, 910, 948
HpyCH4V TGCA 4 cut(s) 4, 632, 760, 915
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 921
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 6 cut(s) 155, 248, 329, 512, 782, 1018
HspAI GCGC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 603
Ksp22I TGATCA 2 cut(s) 447, 877
Kzo9I GATC 3 cut(s) 447, 877, 981
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 3 cut(s) 562, 744, 976
LweI GCATC 4 cut(s) 193, 571, 641, 784
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 14, 836
MalI GATC 3 cut(s) 449, 879, 983
MboI GATC 3 cut(s) 447, 877, 981
MboII GAAGA 3 cut(s) 506, 698, 745
MluCI AATT 4 cut(s) 144, 587, 626, 928
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 5 cut(s) 30, 34, 190, 358, 546
MseI TTAA 3 cut(s) 396, 471, 662
MslI CAYNNNNRTG 3 cut(s) 156, 507, 513
MspA1I CMGCKG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 581, 921
NcoI CCATGG 1 cut(s) 1014
NdeI CATATG 1 cut(s) 444
NdeII GATC 3 cut(s) 447, 877, 981
NlaIII CATG 6 cut(s) 155, 248, 329, 512, 782, 1018
NlaIV GGNNCC 1 cut(s) 601
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PagI TCATGA 2 cut(s) 151, 508
PfeI GAWTC 3 cut(s) 557, 638, 1019
PkrI GCNGC 4 cut(s) 577, 759, 991, 994
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 720
PvuII CAGCTG 1 cut(s) 255
RsaI GTAC 5 cut(s) 133, 223, 324, 601, 945
RsaNI GTAC 5 cut(s) 132, 222, 323, 600, 944
RseI CAYNNNNRTG 3 cut(s) 156, 507, 513
SaqAI TTAA 3 cut(s) 396, 471, 662
SatI GCNGC 4 cut(s) 576, 758, 990, 993
Sau3AI GATC 3 cut(s) 447, 877, 981
Sau96I GGNCC 1 cut(s) 720
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 437
SfaNI GCATC 4 cut(s) 193, 571, 641, 784
SinI GGWCC 1 cut(s) 720
SmiMI CAYNNNNRTG 3 cut(s) 156, 507, 513
SmlI CTYRAG 2 cut(s) 534, 570
SmoI CTYRAG 2 cut(s) 534, 570
SphI GCATGC 1 cut(s) 248
Sse9I AATT 4 cut(s) 144, 587, 626, 928
SsiI CCGC 3 cut(s) 206, 548, 993
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 6 cut(s) 131, 197, 621, 654, 910, 948
TaqI TCGA 3 cut(s) 201, 412, 816
TasI AATT 4 cut(s) 144, 587, 626, 928
TatI WGTACW 1 cut(s) 943
TauI GCSGC 1 cut(s) 995
TfiI GAWTC 3 cut(s) 557, 638, 1019
Tru1I TTAA 3 cut(s) 396, 471, 662
Tru9I TTAA 3 cut(s) 396, 471, 662
TscAI CASTG 3 cut(s) 295, 624, 648
TseI GCWGC 3 cut(s) 575, 757, 989
TspDTI ATGAA 5 cut(s) 36, 84, 140, 168, 746
TspRI CASTG 3 cut(s) 295, 624, 648
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.