Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005486

Physical Location & Seq

Genomic Coordinates Forward (+)

3231191 .. 3232495

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCAGTTCCACTTGCCCCATATCCAACTCCTCCTCCAGCACCACCACCACCATACACATCACCACCTGCAAATGGTGCACAGAGCCAGCTTGTGTGCTCTGGATGCCGCAACCTTTTACTCTATCCTGTTGGAGCCACCTCTGTATGCTGTGCTGTTTGCAATGCCGTGACTGCTGTGCCGCCTCCTGGCACAGAAATGGCACAGCTAGTCTGCGGAGGATGCCACACCCTACTCATGTATATCCGTGGAGCAACGAGTGTACAATGTTCTTGCTGTCACACTGTCAATCTAGCCTTGGAAGCAAATCAGGTTGCACATGTGAATTGTGGAAACTGCAGGATGCTGTTAATGTATCAATATGGAGCAAGATCTGTCAAATGTGCGGTATGCAATTTTGTGACATCCGTTGGGGTCCCGGCGAACACCCCCGAACAGAAATTCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0010363 GO:0010941 GO:0010942 GO:0019222 GO:0031323 GO:0031347 GO:0031348 GO:0031349 GO:0034051 GO:0034052 GO:0043067 GO:0043068 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045595 GO:0045824 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0080134 GO:0080135 GO:0090322 GO:0097159 GO:0098542 GO:1900407 GO:1901031 GO:1901363 GO:1902882 GO:2000121 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

151

Amino Acids

15.64

Weight (kDa)

8.21

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540
fragaria_vesca	FvH4_5g21750
malus_domestica	MD06G1032500.v1.1
prunus_persica	Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1
pyrus_communis	pycom06g02690
rosa_chinensis	RchiOBHm_Chr7g0209241
rosa_laevigata	RLG00000003154
rosa_multiflora	Rmu_sc0001701.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249600
rosa_rugosa	Rorug07G0110400 Rorug07G0110500 Rorug07G0110500 Rorug07G0110600 Rorug07G0110700
rosa_samantha	Rh7AG244600 Rh7BG239900 Rh7CG260200 Rh7DG251500
rosa_wichuraiana	Rw7G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	4 cut(s)	109, 182, 216, 386
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	74, 188
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	91, 208
AluI	AGCT	2 cut(s)	91, 208
Alw21I	GWGCWC	2 cut(s)	82, 101
Alw44I	GTGCAC	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	82, 101
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	2 cut(s)	209, 293
BfmI	CTRYAG	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	76
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	2 cut(s)	109, 182
BlsI	GCNGC	2 cut(s)	110, 183
Bme1390I	CCNGG	2 cut(s)	189, 419
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	3 cut(s)	136, 416, 417
BmrFI	CCNGG	2 cut(s)	189, 419
BmsI	GCATC	3 cut(s)	95, 212, 333
BpmI	CTGGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	247, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 188
Bse1I	ACTGG	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	247, 297
BseGI	GGATG	4 cut(s)	110, 227, 348, 404
BseLI	CCNNNNNNNGG	2 cut(s)	74, 188
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	2 cut(s)	21, 24
BseSI	GKGCMC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	82, 101
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	74, 188
BsmFI	GGGAC	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	82, 101
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	371
BspACI	CCGC	4 cut(s)	109, 182, 216, 386
BspLI	GGNNCC	3 cut(s)	136, 416, 417
BspMAI	CTGCAG	1 cut(s)	341
BspMI	ACCTGC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	247, 297
BssMI	GATC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	4 cut(s)	110, 227, 348, 404
BstKTI	GATC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 105, 173, 222, 302
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	187, 417
BstSFI	CTRYAG	1 cut(s)	337
BstSLI	GKGCMC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	4 cut(s)	110, 227, 348, 404
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	2 cut(s)	238, 320
CviJI	RGCY	5 cut(s)	87, 91, 137, 208, 296
CviKI_1	RGCY	5 cut(s)	87, 91, 137, 208, 296
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	241, 323
FaiI	YATR	8 cut(s)	22, 55, 148, 239, 243, 321, 363, 391
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	237, 319
Fnu4HI	GCNGC	2 cut(s)	109, 182
FokI	GGATG	4 cut(s)	117, 234, 355, 391
Fsp4HI	GCNGC	2 cut(s)	109, 182
FspBI	CTAG	2 cut(s)	209, 293
GluI	GCNGC	2 cut(s)	109, 182
GsuI	CTGGAG	1 cut(s)	21
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	2 cut(s)	241, 323
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	80, 263
Hpy188III	TCNNGA	1 cut(s)	102
Hpy8I	GTNNAC	2 cut(s)	80, 263
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	6 cut(s)	71, 80, 162, 317, 339, 393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 105, 173, 222, 302
Hsp92II	CATG	2 cut(s)	241, 323
KflI	GGGWCCC	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	3 cut(s)	134, 251, 365
LweI	GCATC	3 cut(s)	95, 212, 333
MaeI	CTAG	2 cut(s)	209, 293
MaeIII	GTNAC	3 cut(s)	169, 278, 400
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	82, 101
MluCI	AATT	3 cut(s)	325, 394, 440
MmeI	TCCRAC	2 cut(s)	50, 112
MnlI	CCTC	5 cut(s)	42, 45, 151, 195, 212
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	189, 419
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	77, 105, 173, 222, 302
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	241, 323
NlaIV	GGNNCC	3 cut(s)	136, 416, 417
NmuCI	GTSAC	3 cut(s)	169, 278, 400
NspI	RCATGY	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	76
PciI	ACATGT	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	110, 183
PpuMI	RGGWCCY	1 cut(s)	415
PscI	ACATGT	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	136, 416, 417
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	109, 182
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	189, 419
SduI	GDGCHC	2 cut(s)	82, 101
SetI	ASST	6 cut(s)	70, 93, 117, 143, 210, 315
SfaNI	GCATC	3 cut(s)	95, 212, 333
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	325, 394, 440
SsiI	CCGC	4 cut(s)	109, 182, 216, 386
SspMI	CTAG	2 cut(s)	209, 293
StyD4I	CCNGG	2 cut(s)	187, 417
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	3 cut(s)	325, 394, 440
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	111, 184
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	3 cut(s)	169, 278, 400
Tsp45I	GTSAC	3 cut(s)	169, 278, 400
TspGWI	ACGGA	2 cut(s)	236, 397
TspRI	CASTG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	209, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.