Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005486

Physical Location & Seq

Genomic Coordinates Forward (+)

3889880 .. 3892147

Gene Structure 2268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1032500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCAGTACCACTTGCCCCATATCCAACTCCTCCTCCAGCACCACCACCACCACCACCATACACATCACCACCTGCAAATGGTGCACAGAGCCAGCTTGTGTGCTCTGGATGCCGGAACCTTTTACTCTATCCTGTTGGAGCCACCTCTGTATGCTGTGCTGTTTGCAATGCCGTGACTGCTGTGCCGCCTCCTGGCACAGAAATGGCACAGCTAGTCTGCGGAGGATGCCACACCCTACTCATGTATATCCGTGGAGCAACGAGTGTTCAATGTTCTTGCTGTCACACGGTCAATCTAGCCTTGGAAGCAAATCAGGTTGCACATGTGAATTGTGGGAACTGCAGGATGCTGTTAATGTATCAATATGGAGCAAGATCTGTCAAATGTGCGGTATGCAATTTTGTGACATCCGTTGGGATAACTAATGTGAGTTCATTCGCATCGTCAGGTCCCGGCGAACACCCCCGAACAGAAATTCAACAACTAAAAGTTATCATACACTACTATTGCAAGATGCTACGTACAACTTTGGGTTTGCATCTTAAATTACAAGAGTTTTCCTCCAATATTTCGTCTCTCTTAGTGAGAAGAGAAAACTTTCTTGCTCCTTCACATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0010363 GO:0010941 GO:0010942 GO:0019222 GO:0031323 GO:0031347 GO:0031348 GO:0031349 GO:0034051 GO:0034052 GO:0043067 GO:0043068 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045595 GO:0045824 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0080134 GO:0080135 GO:0090322 GO:0097159 GO:0098542 GO:1900407 GO:1901031 GO:1901363 GO:1902882 GO:2000121 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

208

Amino Acids

22.07

Weight (kDa)

8.64

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	35 - 59	1e-10	LSD1 zinc finger
zf-LSD1	PF06943	74 - 98	1.9e-12	LSD1 zinc finger
zf-LSD1	PF06943	112 - 136	7.7e-13	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540 AT1G32540
fragaria_vesca	FvH4_5g21750
malus_domestica	MD06G1032500.v1.1
prunus_persica	Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1 Prupe.5G039600_v2.0.a1
pyrus_communis	pycom06g02690
rosa_chinensis	RchiOBHm_Chr7g0209241
rosa_laevigata	RLG00000003154
rosa_multiflora	Rmu_sc0001701.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249600
rosa_rugosa	Rorug07G0110400 Rorug07G0110500 Rorug07G0110500 Rorug07G0110600 Rorug07G0110700
rosa_samantha	Rh7AG244600 Rh7BG239900 Rh7CG260200 Rh7DG251500
rosa_wichuraiana	Rw7G020750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AciI	CCGC	3 cut(s)	188, 222, 392
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	2 cut(s)	9, 526
AfiI	CCNNNNNNNGG	2 cut(s)	80, 194
AflIII	ACRYGT	2 cut(s)	325, 616
AgsI	TTSAA	2 cut(s)	272, 482
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	97, 214
AluI	AGCT	2 cut(s)	97, 214
Alw21I	GWGCWC	2 cut(s)	88, 107
Alw26I	GTCTC	1 cut(s)	582
Alw44I	GTGCAC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	88
Bbv12I	GWGCWC	2 cut(s)	88, 107
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	215, 299
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	195, 456
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	3 cut(s)	119, 142, 454
BmrFI	CCNGG	2 cut(s)	195, 456
BmsI	GCATC	6 cut(s)	101, 218, 339, 452, 507, 550
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	253, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 194
Bse1I	ACTGG	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	253, 303
BseGI	GGATG	4 cut(s)	116, 233, 354, 410
BseLI	CCNNNNNNNGG	2 cut(s)	80, 194
BseMI	GCAATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	2 cut(s)	21, 24
BseSI	GKGCMC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	88, 107
BsiSI	CCGG	2 cut(s)	115, 456
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	80, 194
BsmAI	GTCTC	1 cut(s)	582
BsmBI	CGTCTC	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	438
Bsp1286I	GDGCHC	2 cut(s)	88, 107
Bsp143I	GATC	1 cut(s)	377
BspACI	CCGC	3 cut(s)	188, 222, 392
BspLI	GGNNCC	3 cut(s)	119, 142, 454
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	253, 303
BssMI	GATC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	586
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	583
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	4 cut(s)	116, 233, 354, 410
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 111, 179, 228, 308
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	2 cut(s)	329, 620
BstSCI	CCNGG	2 cut(s)	193, 454
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	88
BstSNI	TACGTA	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	116, 233, 354, 410
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	8, 525
CviAII	CATG	3 cut(s)	244, 326, 617
CviJI	RGCY	5 cut(s)	93, 97, 143, 214, 302
CviKI_1	RGCY	5 cut(s)	93, 97, 143, 214, 302
CviQI	GTAC	2 cut(s)	8, 525
DdeI	CTNAG	1 cut(s)	583
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
Eco105I	TACGTA	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	3 cut(s)	247, 329, 620
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	3 cut(s)	243, 325, 616
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	4 cut(s)	123, 240, 361, 397
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	2 cut(s)	215, 299
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	21
HapII	CCGG	2 cut(s)	115, 456
Hin1II	CATG	3 cut(s)	247, 329, 620
HpaII	CCGG	2 cut(s)	115, 456
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	621
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	8 cut(s)	77, 86, 168, 323, 345, 399, 513, 541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 111, 179, 228, 308
HpyF3I	CTNAG	1 cut(s)	583
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	3 cut(s)	247, 329, 620
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	4 cut(s)	140, 257, 371, 613
LweI	GCATC	6 cut(s)	101, 218, 339, 452, 507, 550
MaeI	CTAG	2 cut(s)	215, 299
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	3 cut(s)	175, 284, 406
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	1 cut(s)	603
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	88, 107
MluCI	AATT	4 cut(s)	331, 400, 477, 548
MmeI	TCCRAC	2 cut(s)	50, 118
MnlI	CCTC	6 cut(s)	42, 45, 157, 201, 218, 574
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	2 cut(s)	356, 546
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	2 cut(s)	115, 456
MspR9I	CCNGG	2 cut(s)	195, 456
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	83, 111, 179, 228, 308
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	247, 329, 620
NlaIV	GGNNCC	3 cut(s)	119, 142, 454
NmuCI	GTSAC	3 cut(s)	175, 284, 406
NspI	RCATGY	2 cut(s)	329, 620
PaqCI	CACCTGC	1 cut(s)	82
PciI	ACATGT	2 cut(s)	325, 616
PdmI	GAANNNNTTC	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	189
Ppu21I	YACGTR	1 cut(s)	524
PpuMI	RGGWCCY	1 cut(s)	452
PscI	ACATGT	2 cut(s)	325, 616
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	119, 142, 454
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	377
RsaI	GTAC	2 cut(s)	9, 526
RsaNI	GTAC	2 cut(s)	8, 525
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	356, 546
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	377
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	195, 456
SduI	GDGCHC	2 cut(s)	88, 107
SetI	ASST	8 cut(s)	76, 99, 123, 149, 216, 321, 454, 526
SfaNI	GCATC	6 cut(s)	101, 218, 339, 452, 507, 550
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	203
SnaBI	TACGTA	1 cut(s)	524
Sse9I	AATT	4 cut(s)	331, 400, 477, 548
SsiI	CCGC	3 cut(s)	188, 222, 392
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	2 cut(s)	215, 299
StyD4I	CCNGG	2 cut(s)	193, 454
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	526
TasI	AATT	4 cut(s)	331, 400, 477, 548
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	356, 546
Tru9I	TTAA	2 cut(s)	356, 546
TseFI	GTSAC	3 cut(s)	175, 284, 406
Tsp45I	GTSAC	3 cut(s)	175, 284, 406
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	2 cut(s)	242, 403
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	2 cut(s)	329, 620
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	2 cut(s)	215, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.