Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006074

Physical Location & Seq

Genomic Coordinates Reverse (-)

12157054 .. 12159125

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAAGCTCTCTTTCTCTCTCCCTTCTAAATCTAAGCCCAAAGTCACAGCAACCACCGCCGACGGTAACAACGCCGTCGATGATGGAACTAGTAAAGAGTTCGTCACCGAATTCGATCCATCGAAAACCCTAGCTAATTCCATCCCCAAATACGTTATTCCTCCGATTGAGAATACATGGAGACCTCACAAGAAGATGAAGAATCTCGATCTACCTCTTCAATCTGGTAACGCAGGTTCCGGACTCGAATTCGAGCCTGAGGTTCCTTTACCTGGTACTGAGAAACCTGATAATATCAGTTACGGTTTAAATCTGCGTCAGAAAGTGAAGGATGATTCAATTGGTGGTGATGCGGTTGAAGAGCGGAAAGTATCTATGGGGGAGCAGCTTATGTTACAGAGTTTGAGGAGAGATCTGATGTCACTTGCTGATGATCCGACTTTGGAGGATTTTGAGAGTGTTCCTGTGGATGGTTTCGGTGCTGCGTTGATGGCTGGATATGGATGGAAGCCAGGTAAGGGAATAGGTAAGAATGCTAAAGAAGATGTTGAGATTAAGGAGTATAAAAAGTGGACTGCTAAGGAAGGGTTAGGTTTTGATCCTGATAGATCTAAGGTTGTTGATGTGAAGGCTAAAGTGAAGGAAAGTGTGAAACTTGATAAGAAGGGAGTAGGTATTAATGGTGGGGATGTGTTTTTTGTTGGGAAAGAAGTGAGGATTATTGCAGGGAGAGATGTAGGATTGAAGGGTAAGATTGTGGAGAAACCTGGTAGTGATTTTTTTGTTATAAAGATCTCTGGAAGTGAAGAGGAAGTGAAAGTGGGTGTGAATGAGGTTGCTGATTTGGGTTCTAAGGAAGAGGAAAAGTGTTTGAAGAAGTTGAAAGATTTGCAGTTAAATGATAGGGAGAAGGATAAGAAAACGAGTGGAAGAGGTAGAGGAGCAGAGAGAGGGAGTCGAAGTGAAGTTAGAGCCAGTGAGAAGCAAGATAGAGGTCAAACAAGAGAGAGGAAAGTGAAGCCTTCATGGCTTAGGAGTCATATAAAGGTGCGAATAGTAAGCAAAGATTGGAAGGGTGGGAGATTGTATCTTAAGAAAGGGAAGGTTGTTGATGTTGTTGGACCAACAACTTGTGATATCACGATGGATGAGACGCAAGAGTTGGTTCAAGGGGTGGATCAGGAGTTGCTTGAGACGGCATTGCCTAGACGAGGAGGGCCGGTTTTGGTTTTATCGGGGAAGCATAAGGGTGTCTATGGAAATCTGGTTGAGAAAGATTTGGATAAAGAAACTGGTGTGGTTCGTGATTTAGACAACCACAAGATGCTTGATGTTAGGCTTGACCAAGTTGCTGAGTACATGGGTGATATGGATGATATTGAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2

Protein Analysis

462

Amino Acids

51.03

Weight (kDa)

7.6

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	144 - 202	4.6e-22	G-patch domain
GPKOW_C	PF25088	348 - 455	9.2e-38	GPKOW C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33520
fragaria_vesca	FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160
malus_domestica	MD03G1208000.v1.1 MD11G1222200.v1.1
prunus_persica	Prupe.4G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038051
rosa_laevigata	RLG00000033832
rosa_multiflora	Rmu_sc0002670.1_g000010 Rmu_sc0008278.1_g000003
rosa_roxburghii	Rroxscaffold_1G00042880
rosa_rugosa	Rorug05G0170200 Rorug05G0170300 Rorug05G0170400 Rorug05G0170500 Rorug05G0170600 Rorug05G0170600 Rorug05G0170700
rosa_samantha	Rh5AG258300 Rh5BG261700 Rh5CG293700 Rh5DG270700
rosa_wichuraiana	Rw5G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
Acc36I	ACCTGC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	364
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	3 cut(s)	57, 353, 364
AclWI	GGATC	4 cut(s)	110, 428, 593, 1185
AcsI	RAATTY	2 cut(s)	110, 248
AfaI	GTAC	2 cut(s)	277, 1358
AfiI	CCNNNNNNNGG	4 cut(s)	272, 470, 518, 1211
AflII	CTTAAG	1 cut(s)	1091
AgsI	TTSAA	8 cut(s)	221, 339, 359, 745, 874, 883, 1169, 1382
AhlI	ACTAGT	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	271, 511, 766
AluBI	AGCT	3 cut(s)	7, 134, 388
AluI	AGCT	3 cut(s)	7, 134, 388
Alw26I	GTCTC	3 cut(s)	175, 1145, 1187
AlwI	GGATC	4 cut(s)	110, 428, 593, 1185
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	1 cut(s)	1217
ApeKI	GCWGC	2 cut(s)	385, 482
ApoI	RAATTY	2 cut(s)	110, 248
AseI	ATTAAT	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	1121, 1217
AsuHPI	GGTGA	3 cut(s)	97, 359, 1376
AvaII	GGWCC	1 cut(s)	1121
AxyI	CCTNAGG	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	397, 469
BccI	CCATC	7 cut(s)	77, 127, 149, 464, 484, 498, 1138
BceAI	ACGGC	2 cut(s)	59, 1212
BciT130I	CCWGG	3 cut(s)	273, 513, 768
BcoDI	GTCTC	3 cut(s)	175, 1145, 1187
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	3 cut(s)	90, 131, 1206
BfrI	CTTAAG	1 cut(s)	1091
BfuAI	ACCTGC	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	1027
BglII	AGATCT	3 cut(s)	412, 608, 792
BisI	GCNGC	2 cut(s)	386, 483
BlsI	GCNGC	2 cut(s)	387, 484
Bme1390I	CCNGG	3 cut(s)	273, 513, 768
Bme18I	GGWCC	1 cut(s)	1121
BmgT120I	GGNCC	2 cut(s)	1121, 1217
BmiI	GGNNCC	2 cut(s)	238, 264
BmrFI	CCNGG	3 cut(s)	273, 513, 768
BmsI	GCATC	2 cut(s)	340, 1314
Bpu10I	CCTNAGC	2 cut(s)	579, 1031
BpuEI	CTTGAG	1 cut(s)	1211
BsaI	GGTCTC	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	946, 976, 1206, 1236
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 470, 518, 1211
Bse118I	RCCGGY	1 cut(s)	1219
Bse1I	ACTGG	2 cut(s)	975, 1297
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	1199
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	273, 513, 768
BseGI	GGATG	7 cut(s)	141, 337, 475, 509, 694, 1153, 1378
BseLI	CCNNNNNNNGG	4 cut(s)	272, 470, 518, 1211
BseMI	GCAATG	1 cut(s)	1199
BseMII	CTCAG	3 cut(s)	249, 270, 1344
BseNI	ACTGG	2 cut(s)	975, 1297
BseRI	GAGGAG	3 cut(s)	421, 954, 1227
BseXI	GCAGC	2 cut(s)	397, 469
BshFI	GGCC	1 cut(s)	1219
BsiSI	CCGG	2 cut(s)	240, 1220
BslI	CCNNNNNNNGG	4 cut(s)	272, 470, 518, 1211
BsmAI	GTCTC	3 cut(s)	175, 1145, 1187
BsmBI	CGTCTC	2 cut(s)	1145, 1187
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	1219
Bso31I	GGTCTC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
BspACI	CCGC	3 cut(s)	57, 353, 364
BspANI	GGCC	1 cut(s)	1219
BspCNI	CTCAG	3 cut(s)	250, 271, 1345
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	238, 264
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	4 cut(s)	110, 428, 593, 1185
BspQI	GCTCTTC	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	1091
BspTNI	GGTCTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	1199
BsrFI	RCCGGY	1 cut(s)	1219
BsrI	ACTGG	2 cut(s)	975, 1297
BssAI	RCCGGY	1 cut(s)	1219
BssMI	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
Bst2UI	CCWGG	3 cut(s)	273, 513, 768
Bst4CI	ACNGT	2 cut(s)	65, 305
Bst6I	CTCTTC	5 cut(s)	222, 354, 801, 852, 925
BstAFI	CTTAAG	1 cut(s)	1091
BstDEI	CTNAG	8 cut(s)	33, 258, 279, 579, 612, 852, 1031, 1353
BstENI	CCTNNNNNAGG	1 cut(s)	1209
BstF5I	GGATG	7 cut(s)	141, 337, 475, 509, 694, 1153, 1378
BstKTI	GATC	8 cut(s)	118, 211, 415, 436, 601, 611, 795, 1180
BstMAI	GTCTC	3 cut(s)	175, 1145, 1187
BstMBI	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 491, 1027
BstNI	CCWGG	3 cut(s)	273, 513, 768
BstSCI	CCNGG	3 cut(s)	271, 511, 766
BstV1I	GCAGC	2 cut(s)	397, 469
BstX2I	RGATCY	3 cut(s)	412, 608, 792
BstYI	RGATCY	3 cut(s)	412, 608, 792
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	1219
BtsCI	GGATG	7 cut(s)	141, 337, 475, 509, 694, 1153, 1378
BtsIMutI	CAGTG	1 cut(s)	982
BveI	ACCTGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	1219
Cfr13I	GGNCC	2 cut(s)	1121, 1217
CseI	GACGC	2 cut(s)	305, 1162
CsiI	ACCWGGT	2 cut(s)	271, 766
Csp6I	GTAC	2 cut(s)	276, 1357
CviAII	CATG	3 cut(s)	177, 1026, 1360
CviQI	GTAC	2 cut(s)	276, 1357
DdeI	CTNAG	8 cut(s)	33, 258, 279, 579, 612, 852, 1031, 1353
DpnI	GATC	8 cut(s)	117, 210, 414, 435, 600, 610, 794, 1179
DpnII	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	5 cut(s)	222, 354, 801, 852, 925
EarI	CTCTTC	5 cut(s)	222, 354, 801, 852, 925
Eco31I	GGTCTC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	1138
Eco47I	GGWCC	1 cut(s)	1121
Eco81I	CCTNAGG	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	1209
EcoRI	GAATTC	2 cut(s)	110, 248
EcoRII	CCWGG	3 cut(s)	271, 511, 766
EcoRV	GATATC	1 cut(s)	1138
Esp3I	CGTCTC	2 cut(s)	1145, 1187
FaeI	CATG	3 cut(s)	180, 1029, 1363
FatI	CATG	3 cut(s)	176, 1025, 1359
Fnu4HI	GCNGC	2 cut(s)	386, 483
FokI	GGATG	7 cut(s)	128, 344, 482, 516, 701, 1160, 1385
Fsp4HI	GCNGC	2 cut(s)	386, 483
FspBI	CTAG	3 cut(s)	90, 131, 1206
GluI	GCNGC	2 cut(s)	386, 483
HaeIII	GGCC	1 cut(s)	1219
HapII	CCGG	2 cut(s)	240, 1220
HgaI	GACGC	2 cut(s)	305, 1162
Hin1II	CATG	3 cut(s)	180, 1029, 1363
HinfI	GANTC	5 cut(s)	202, 243, 335, 955, 1036
HpaII	CCGG	2 cut(s)	240, 1220
HphI	GGTGA	3 cut(s)	97, 359, 1376
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	4 cut(s)	165, 321, 417, 438
Hpy188III	TCNNGA	7 cut(s)	206, 240, 602, 798, 1141, 1181, 1304
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	2 cut(s)	65, 80
HpyCH4III	ACNGT	2 cut(s)	65, 305
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	725, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 491, 1027
HpyF3I	CTNAG	8 cut(s)	33, 258, 279, 579, 612, 852, 1031, 1353
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	180, 1029, 1363
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	382, 941
Lsp1109I	GCAGC	2 cut(s)	397, 469
LweI	GCATC	2 cut(s)	340, 1314
MabI	ACCWGGT	2 cut(s)	271, 766
MaeI	CTAG	3 cut(s)	90, 131, 1206
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	7 cut(s)	43, 65, 103, 227, 299, 393, 420
MalI	GATC	8 cut(s)	117, 210, 414, 435, 600, 610, 794, 1179
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
MboII	GAAGA	9 cut(s)	205, 209, 211, 371, 554, 818, 869, 886, 942
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	3 cut(s)	412, 608, 792
MluCI	AATT	4 cut(s)	110, 136, 248, 339
MlyI	GAGTC	3 cut(s)	237, 964, 1045
MmeI	TCCRAC	2 cut(s)	461, 1099
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	5 cut(s)	308, 555, 678, 896, 1092
MslI	CAYNNNNRTG	1 cut(s)	1248
MspCI	CTTAAG	1 cut(s)	1091
MspI	CCGG	2 cut(s)	240, 1220
MspR9I	CCNGG	3 cut(s)	273, 513, 768
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	273, 513, 768
MwoI	GCNNNNNNNGC	3 cut(s)	56, 491, 1027
NdeII	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
NlaIII	CATG	3 cut(s)	180, 1029, 1363
NlaIV	GGNNCC	2 cut(s)	238, 264
NmuCI	GTSAC	3 cut(s)	43, 103, 420
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	202, 335
PkrI	GCNGC	2 cut(s)	387, 484
PleI	GAGTC	3 cut(s)	237, 963, 1044
PpsI	GAGTC	3 cut(s)	237, 963, 1044
PshBI	ATTAAT	1 cut(s)	678
PsiI	TTATAA	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	271, 511, 766
PspGI	CCWGG	3 cut(s)	271, 511, 766
PspN4I	GGNNCC	2 cut(s)	238, 264
PspPI	GGNCC	2 cut(s)	1121, 1217
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PsuI	RGATCY	3 cut(s)	412, 608, 792
RsaI	GTAC	2 cut(s)	277, 1358
RsaNI	GTAC	2 cut(s)	276, 1357
RseI	CAYNNNNRTG	1 cut(s)	1248
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	5 cut(s)	308, 555, 678, 896, 1092
SatI	GCNGC	2 cut(s)	386, 483
Sau3AI	GATC	8 cut(s)	115, 208, 412, 433, 598, 608, 792, 1177
Sau96I	GGNCC	2 cut(s)	1121, 1217
SchI	GAGTC	3 cut(s)	237, 964, 1045
ScrFI	CCNGG	3 cut(s)	273, 513, 768
SexAI	ACCWGGT	2 cut(s)	271, 766
SfaNI	GCATC	2 cut(s)	340, 1314
SinI	GGWCC	1 cut(s)	1121
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SmlI	CTYRAG	2 cut(s)	1091, 1190
SmoI	CTYRAG	2 cut(s)	1091, 1190
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	4 cut(s)	110, 136, 248, 339
SsiI	CCGC	3 cut(s)	57, 353, 364
SspMI	CTAG	3 cut(s)	90, 131, 1206
StyD4I	CCNGG	3 cut(s)	271, 511, 766
TaaI	ACNGT	2 cut(s)	65, 305
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	7 cut(s)	78, 114, 122, 207, 246, 252, 958
TasI	AATT	4 cut(s)	110, 136, 248, 339
TatI	WGTACW	1 cut(s)	1356
TfiI	GAWTC	2 cut(s)	202, 335
Tru1I	TTAA	5 cut(s)	308, 555, 678, 896, 1092
Tru9I	TTAA	5 cut(s)	308, 555, 678, 896, 1092
TscAI	CASTG	1 cut(s)	982
TseFI	GTSAC	3 cut(s)	43, 103, 420
TseI	GCWGC	2 cut(s)	385, 482
Tsp45I	GTSAC	3 cut(s)	43, 103, 420
TspDTI	ATGAA	3 cut(s)	17, 212, 1014
TspRI	CASTG	1 cut(s)	982
Vha464I	CTTAAG	1 cut(s)	1091
VpaK11BI	GGWCC	1 cut(s)	1121
VspI	ATTAAT	1 cut(s)	678
XagI	CCTNNNNNAGG	1 cut(s)	1209
XapI	RAATTY	2 cut(s)	110, 248
XspI	CTAG	3 cut(s)	90, 131, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.