Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006074

Physical Location & Seq

Genomic Coordinates Reverse (-)

15819623 .. 15820995

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTGTTTACTTACACATGTTATTGAACTGACTATTGTGTACTGGCCGGCTGCAGGGTTGGAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTTAAGAGAGGCTCCTTTACTTCTGAAGAAGAACAGATTATTATTGATGTCCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCGAAACATCTACCTGGAAGGACAGACAATGAAGTGAAGAATTTCTGGAACTCTTGCATTAAGAAGAAGCTCATGTCACAAGGTTTGGACCCGCAGACCCATAACTTGATCTCTTCTCATAAAAGGTCAGTAGCTTCTAATAAGACTGCAGGCAGCAACGCCAAATTACAATCCCACATCGATCAAAAGAGACCAGTTTTCACTGTGAACAATATGTCACAGATGATAGATTCTTCAGCGGAAATTAATTACTCAATTTCACCACCTATTGTACCATTGTCCAATGCTCAACCTCCCACTGTTCAACCCATAATGGCCACACCCACAGATAATCAATATCTTATTCAAAACCCTAATTCCGGCTGGACTAGTGTTACCGATATTCCAACCTTTCCCGGTAGCACACTGAACATCACCTCTGCATCGTCTTCCTCAGCCTTTGGGCACTTGGATGGTAGTAATTGCATCTGGGCAGCTGGTGCTGATCCCTTTGAAGCAGCACCAGGAGCAATGGAGCTGCAGGGAGAGCAGTCAGAAGGACAAGTAGTACAAGTAGAGCAAGAAAAGGAAAAGTTCTTGGAGATGGAAATGAAGGCTATGCAGGACATGGATATTTCTGCTTCGTTTGATCAGAGCTCAAGCTTTGATTTTAGCCTTGTGGAGTATTACTCTACACTAATGTCTGGAGTCGTGCCTCATGATCATGTAAACTATTCTGCCGCTGACTTTACATGGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

313

Amino Acids

34.82

Weight (kDa)

5.47

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	41 - 84	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	44 - 89	2.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33520
fragaria_vesca	FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160
malus_domestica	MD03G1208000.v1.1 MD11G1222200.v1.1
prunus_persica	Prupe.4G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038051
rosa_laevigata	RLG00000033832
rosa_multiflora	Rmu_sc0002670.1_g000010 Rmu_sc0008278.1_g000003
rosa_roxburghii	Rroxscaffold_1G00042880
rosa_rugosa	Rorug05G0170200 Rorug05G0170300 Rorug05G0170400 Rorug05G0170500 Rorug05G0170600 Rorug05G0170600 Rorug05G0170700
rosa_samantha	Rh5AG258300 Rh5BG261700 Rh5CG293700 Rh5DG270700
rosa_wichuraiana	Rw5G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	3 cut(s)	290, 437, 918
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	2 cut(s)	44, 513
AcsI	RAATTY	2 cut(s)	171, 238
AcuI	CTGAAG	2 cut(s)	159, 417
AfaI	GTAC	3 cut(s)	41, 471, 747
AfiI	CCNNNNNNNGG	2 cut(s)	53, 557
AflII	CTTAAG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	26, 503, 545, 692
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	211, 700
AluBI	AGCT	6 cut(s)	268, 332, 674, 715, 834, 840
AluI	AGCT	6 cut(s)	268, 332, 674, 715, 834, 840
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	2 cut(s)	100, 382
AlwI	GGATC	1 cut(s)	677
AoxI	GGCC	2 cut(s)	44, 513
ApeKI	GCWGC	5 cut(s)	50, 351, 671, 695, 715
ApoI	RAATTY	2 cut(s)	171, 238
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	2 cut(s)	450, 604
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	515
BanII	GRGCYC	2 cut(s)	193, 836
BbsI	GAAGAC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	836
BbvCI	CCTCAGC	1 cut(s)	631
BbvI	GCAGC	5 cut(s)	37, 363, 683, 702, 707
BccI	CCATC	4 cut(s)	84, 180, 644, 775
BciT130I	CCWGG	2 cut(s)	213, 702
BclI	TGATCA	2 cut(s)	826, 898
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	100, 382
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	3 cut(s)	51, 345, 716
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	6 cut(s)	51, 352, 672, 696, 716, 918
BlsI	GCNGC	6 cut(s)	52, 353, 673, 697, 717, 919
Bme1390I	CCNGG	3 cut(s)	213, 594, 702
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	127, 288
BmrFI	CCNGG	3 cut(s)	213, 594, 702
BmsI	GCATC	2 cut(s)	629, 672
BpiI	GAAGAC	1 cut(s)	618
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpmI	CTGGAG	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	631
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	378
BsaI	GGTCTC	2 cut(s)	100, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 557
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	47, 392
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	2 cut(s)	213, 702
BseCI	ATCGAT	1 cut(s)	378
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	2 cut(s)	53, 557
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	206, 645
BseNI	ACTGG	2 cut(s)	47, 392
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	5 cut(s)	37, 363, 683, 702, 707
BshFI	GGCC	2 cut(s)	46, 515
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	836
BsiSI	CCGG	3 cut(s)	47, 558, 594
BslI	CCNNNNNNNGG	2 cut(s)	53, 557
BsmAI	GTCTC	2 cut(s)	100, 382
BsnI	GGCC	2 cut(s)	46, 515
Bso31I	GGTCTC	2 cut(s)	100, 382
Bsp1286I	GDGCHC	3 cut(s)	193, 645, 836
Bsp143I	GATC	5 cut(s)	306, 379, 682, 826, 898
BspACI	CCGC	3 cut(s)	290, 437, 918
BspANI	GGCC	2 cut(s)	46, 515
BspCNI	CTCAG	2 cut(s)	205, 644
BspDI	ATCGAT	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	127, 288
BspMAI	CTGCAG	3 cut(s)	55, 349, 720
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	677
BspTI	CTTAAG	1 cut(s)	116
BspTNI	GGTCTC	2 cut(s)	100, 382
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	47, 392
BssAI	RCCGGY	1 cut(s)	46
BssMI	GATC	5 cut(s)	306, 379, 682, 826, 898
Bst2UI	CCWGG	2 cut(s)	213, 702
Bst4CI	ACNGT	2 cut(s)	403, 499
Bst6I	CTCTTC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	48, 349
BstDEI	CTNAG	2 cut(s)	192, 631
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	5 cut(s)	309, 382, 685, 829, 901
BstMAI	GTCTC	2 cut(s)	100, 382
BstMBI	GATC	5 cut(s)	306, 379, 682, 826, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 677, 704, 724
BstNI	CCWGG	2 cut(s)	213, 702
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	211, 592, 700
BstSFI	CTRYAG	3 cut(s)	51, 345, 716
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	5 cut(s)	37, 363, 683, 702, 707
BstV2I	GAAGAC	1 cut(s)	618
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	46, 515
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	399, 495, 602
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	48, 349
CciI	TCATGA	1 cut(s)	895
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	3 cut(s)	40, 470, 746
CviAII	CATG	6 cut(s)	17, 271, 805, 896, 902, 930
CviQI	GTAC	3 cut(s)	40, 470, 746
DdeI	CTNAG	2 cut(s)	192, 631
DpnI	GATC	5 cut(s)	308, 381, 684, 828, 900
DpnII	GATC	5 cut(s)	306, 379, 682, 826, 898
EaeI	YGGCCR	2 cut(s)	44, 513
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Ecl136II	GAGCTC	1 cut(s)	834
Eco24I	GRGCYC	2 cut(s)	193, 836
Eco31I	GGTCTC	2 cut(s)	100, 382
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	834
Eco57I	CTGAAG	2 cut(s)	159, 417
EcoICRI	GAGCTC	1 cut(s)	834
EcoRII	CCWGG	2 cut(s)	211, 700
EcoT38I	GRGCYC	2 cut(s)	193, 836
FaeI	CATG	6 cut(s)	20, 274, 808, 899, 905, 933
FatI	CATG	6 cut(s)	16, 270, 804, 895, 901, 929
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	2 cut(s)	826, 898
Fnu4HI	GCNGC	6 cut(s)	51, 352, 672, 696, 716, 918
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	2 cut(s)	193, 836
Fsp4HI	GCNGC	6 cut(s)	51, 352, 672, 696, 716, 918
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	6 cut(s)	51, 352, 672, 696, 716, 918
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	2 cut(s)	46, 515
HapII	CCGG	3 cut(s)	47, 558, 594
Hin1II	CATG	6 cut(s)	20, 274, 808, 899, 905, 933
HindIII	AAGCTT	1 cut(s)	838
HinfI	GANTC	2 cut(s)	428, 885
HpaII	CCGG	3 cut(s)	47, 558, 594
HphI	GGTGA	2 cut(s)	450, 604
Hpy166II	GTNNAC	5 cut(s)	8, 40, 166, 406, 907
Hpy188I	TCNGA	4 cut(s)	139, 195, 733, 831
Hpy188III	TCNNGA	3 cut(s)	244, 882, 896
Hpy8I	GTNNAC	5 cut(s)	8, 40, 166, 406, 907
HpyAV	CCTTC	3 cut(s)	210, 728, 784
HpyCH4III	ACNGT	2 cut(s)	403, 499
HpyCH4V	TGCA	8 cut(s)	53, 81, 255, 347, 620, 663, 718, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 677, 704, 724
HpyF3I	CTNAG	2 cut(s)	192, 631
Hsp92II	CATG	6 cut(s)	20, 274, 808, 899, 905, 933
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	2 cut(s)	826, 898
Kzo9I	GATC	5 cut(s)	306, 379, 682, 826, 898
LmnI	GCTCC	3 cut(s)	131, 704, 712
Lsp1109I	GCAGC	5 cut(s)	37, 363, 683, 702, 707
LweI	GCATC	2 cut(s)	629, 672
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	3 cut(s)	273, 414, 571
MalI	GATC	5 cut(s)	308, 381, 684, 828, 900
MboI	GATC	5 cut(s)	306, 379, 682, 826, 898
MboII	GAAGA	7 cut(s)	152, 155, 247, 274, 303, 423, 618
MhlI	GDGCHC	3 cut(s)	193, 645, 836
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	8 cut(s)	171, 238, 362, 441, 445, 453, 553, 658
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	894
MmeI	TCCRAC	2 cut(s)	39, 608
MnlI	CCTC	6 cut(s)	57, 116, 501, 625, 640, 903
Mox20I	TGGCCA	1 cut(s)	515
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	3 cut(s)	117, 258, 444
MslI	CAYNNNNRTG	2 cut(s)	648, 900
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	3 cut(s)	437, 674, 920
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	3 cut(s)	47, 558, 594
MspR9I	CCNGG	3 cut(s)	213, 594, 702
MvaI	CCWGG	2 cut(s)	213, 702
MwoI	GCNNNNNNNGC	4 cut(s)	197, 677, 704, 724
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	594
NdeII	GATC	5 cut(s)	306, 379, 682, 826, 898
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	6 cut(s)	20, 274, 808, 899, 905, 933
NlaIV	GGNNCC	2 cut(s)	127, 288
NmuCI	GTSAC	2 cut(s)	273, 414
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	895
PciI	ACATGT	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	6 cut(s)	52, 353, 673, 697, 717, 919
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
PscI	ACATGT	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	836
Psp6I	CCWGG	2 cut(s)	211, 700
PspGI	CCWGG	2 cut(s)	211, 700
PspN4I	GGNNCC	2 cut(s)	127, 288
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	3 cut(s)	55, 349, 720
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	41, 471, 747
RsaNI	GTAC	3 cut(s)	40, 470, 746
RseI	CAYNNNNRTG	2 cut(s)	648, 900
SacI	GAGCTC	1 cut(s)	836
SaqAI	TTAA	3 cut(s)	117, 258, 444
SatI	GCNGC	6 cut(s)	51, 352, 672, 696, 716, 918
Sau3AI	GATC	5 cut(s)	306, 379, 682, 826, 898
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	894
ScrFI	CCNGG	3 cut(s)	213, 594, 702
SduI	GDGCHC	3 cut(s)	193, 645, 836
SfaNI	GCATC	2 cut(s)	629, 672
SfcI	CTRYAG	3 cut(s)	51, 345, 716
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	648, 900
SmlI	CTYRAG	2 cut(s)	116, 835
SmoI	CTYRAG	2 cut(s)	116, 835
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	8 cut(s)	171, 238, 362, 441, 445, 453, 553, 658
SsiI	CCGC	3 cut(s)	290, 437, 918
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	836
StyD4I	CCNGG	3 cut(s)	211, 592, 700
TaaI	ACNGT	2 cut(s)	403, 499
TaqI	TCGA	1 cut(s)	378
TasI	AATT	8 cut(s)	171, 238, 362, 441, 445, 453, 553, 658
TatI	WGTACW	2 cut(s)	39, 745
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	117, 258, 444
Tru9I	TTAA	3 cut(s)	117, 258, 444
TscAI	CASTG	3 cut(s)	406, 502, 609
TseFI	GTSAC	2 cut(s)	273, 414
TseI	GCWGC	5 cut(s)	50, 351, 671, 695, 715
Tsp45I	GTSAC	2 cut(s)	273, 414
TspDTI	ATGAA	2 cut(s)	243, 803
TspRI	CASTG	3 cut(s)	406, 502, 609
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	171, 238
XceI	RCATGY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.