MOS2-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G33520 |
| fragaria_vesca | FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 FvH4_3g22160 |
| malus_domestica | MD03G1208000.v1.1 MD11G1222200.v1.1 |
| prunus_persica | Prupe.4G208800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0038051 |
| rosa_laevigata | RLG00000033832 |
| rosa_multiflora | Rmu_sc0002670.1_g000010 Rmu_sc0008278.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00042880 |
| rosa_rugosa | Rorug05G0170200 Rorug05G0170300 Rorug05G0170400 Rorug05G0170500 Rorug05G0170600 Rorug05G0170600 Rorug05G0170700 |
| rosa_samantha | Rh5AG258300 Rh5BG261700 Rh5CG293700 Rh5DG270700 |
| rosa_wichuraiana | Rw5G024150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 717 |
| AccB1I | GGYRCC | 4 cut(s) | 195, 402, 717, 859 |
| AccBSI | CCGCTC | 2 cut(s) | 571, 631 |
| AccI | GTMKAC | 1 cut(s) | 773 |
| AccII | CGCG | 1 cut(s) | 1311 |
| AccIII | TCCGGA | 1 cut(s) | 528 |
| AclWI | GGATC | 4 cut(s) | 573, 648, 981, 1460 |
| AcsI | RAATTY | 4 cut(s) | 125, 332, 550, 611 |
| AcuI | CTGAAG | 1 cut(s) | 1211 |
| AcyI | GRCGYC | 6 cut(s) | 78, 132, 196, 339, 403, 536 |
| AfaI | GTAC | 6 cut(s) | 308, 515, 662, 719, 784, 1228 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 149, 356, 680, 711, 728, 1310 |
| AflIII | ACRYGT | 1 cut(s) | 1229 |
| AgeI | ACCGGT | 1 cut(s) | 1318 |
| AgsI | TTSAA | 4 cut(s) | 616, 952, 1057, 1268 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1059, 1091 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 245, 277, 452, 484 |
| AluBI | AGCT | 6 cut(s) | 226, 256, 433, 463, 955, 1473 |
| AluI | AGCT | 6 cut(s) | 226, 256, 433, 463, 955, 1473 |
| Alw21I | GWGCWC | 2 cut(s) | 258, 465 |
| Alw26I | GTCTC | 3 cut(s) | 590, 934, 1286 |
| AlwI | GGATC | 4 cut(s) | 573, 648, 981, 1460 |
| Ama87I | CYCGRG | 5 cut(s) | 221, 269, 428, 476, 722 |
| Aor13HI | TCCGGA | 1 cut(s) | 528 |
| AoxI | GGCC | 4 cut(s) | 154, 310, 361, 517 |
| ApeKI | GCWGC | 2 cut(s) | 601, 697 |
| ApoI | RAATTY | 4 cut(s) | 125, 332, 550, 611 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 153, 185, 360, 392 |
| AsiGI | ACCGGT | 1 cut(s) | 1318 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 68, 1284 |
| Asp718I | GGTACC | 1 cut(s) | 717 |
| AspLEI | GCGC | 4 cut(s) | 198, 405, 697, 1311 |
| AspS9I | GGNCC | 5 cut(s) | 155, 362, 787, 1220, 1316 |
| AsuC2I | CCSGG | 4 cut(s) | 243, 450, 723, 724 |
| AsuHPI | GGTGA | 5 cut(s) | 139, 226, 346, 433, 883 |
| AsuII | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| AvaI | CYCGRG | 5 cut(s) | 221, 269, 428, 476, 722 |
| AvaII | GGWCC | 3 cut(s) | 787, 1220, 1316 |
| AxyI | CCTNAGG | 1 cut(s) | 864 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1404, 1437 |
| BanI | GGYRCC | 4 cut(s) | 195, 402, 717, 859 |
| BanII | GRGCYC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| BbsI | GAAGAC | 2 cut(s) | 71, 1044 |
| Bbv12I | GWGCWC | 2 cut(s) | 258, 465 |
| BbvI | GCAGC | 2 cut(s) | 588, 684 |
| BccI | CCATC | 2 cut(s) | 646, 1241 |
| BceAI | ACGGC | 3 cut(s) | 112, 325, 532 |
| BciVI | GTATCC | 1 cut(s) | 677 |
| BcnI | CCSGG | 4 cut(s) | 243, 450, 723, 724 |
| BcoDI | GTCTC | 3 cut(s) | 590, 934, 1286 |
| BfaI | CTAG | 2 cut(s) | 1134, 1470 |
| BfoI | RGCGCY | 3 cut(s) | 199, 406, 698 |
| BfuI | GTATCC | 1 cut(s) | 677 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 96 |
| BglII | AGATCT | 1 cut(s) | 1282 |
| Bme1390I | CCNGG | 4 cut(s) | 243, 450, 723, 724 |
| Bme18I | GGWCC | 3 cut(s) | 787, 1220, 1316 |
| BmeT110I | CYCGRG | 5 cut(s) | 221, 269, 428, 476, 722 |
| BmgT120I | GGNCC | 5 cut(s) | 155, 362, 787, 1220, 1316 |
| BmiI | GGNNCC | 7 cut(s) | 157, 197, 364, 404, 719, 861, 1222 |
| BmrFI | CCNGG | 4 cut(s) | 243, 450, 723, 724 |
| BmrI | ACTGGG | 1 cut(s) | 1218 |
| BmsI | GCATC | 3 cut(s) | 660, 1366, 1396 |
| BmuI | ACTGGG | 1 cut(s) | 1218 |
| BpiI | GAAGAC | 2 cut(s) | 71, 1044 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 263, 295, 278, 310, 470, 502, 485, 517 |
| BpmI | CTGGAG | 1 cut(s) | 1482 |
| Bpu14I | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| BpuEI | CTTGAG | 5 cut(s) | 242, 449, 626, 1310, 1460 |
| BpuMI | CCSGG | 4 cut(s) | 243, 450, 723, 724 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1380 |
| BsaHI | GRCGYC | 6 cut(s) | 78, 132, 196, 339, 403, 536 |
| BsaJI | CCNNGG | 5 cut(s) | 721, 722, 1094, 1304, 1477 |
| BsaWI | WCCGGW | 2 cut(s) | 528, 1318 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 245, 275, 452, 482, 620, 650 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 149, 356, 680, 711, 728, 1310 |
| Bse118I | RCCGGY | 5 cut(s) | 149, 356, 673, 789, 1318 |
| Bse1I | ACTGG | 4 cut(s) | 948, 1224, 1396, 1465 |
| Bse21I | CCTNAGG | 1 cut(s) | 864 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1380 |
| BseAI | TCCGGA | 1 cut(s) | 528 |
| BseDI | CCNNGG | 5 cut(s) | 721, 722, 1094, 1304, 1477 |
| BseGI | GGATG | 7 cut(s) | 657, 675, 1012, 1216, 1252, 1381, 1411 |
| BseJI | GATNNNNATC | 1 cut(s) | 1380 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 149, 356, 680, 711, 728, 1310 |
| BseMII | CTCAG | 2 cut(s) | 566, 1443 |
| BseNI | ACTGG | 4 cut(s) | 948, 1224, 1396, 1465 |
| BseRI | GAGGAG | 7 cut(s) | 608, 671, 869, 1063, 1096, 1111, 1126 |
| BseXI | GCAGC | 2 cut(s) | 588, 684 |
| BsgI | GTGCAG | 1 cut(s) | 1281 |
| Bsh1236I | CGCG | 1 cut(s) | 1311 |
| Bsh1285I | CGRYCG | 2 cut(s) | 183, 390 |
| BshFI | GGCC | 4 cut(s) | 156, 312, 363, 519 |
| BshNI | GGYRCC | 4 cut(s) | 195, 402, 717, 859 |
| BshTI | ACCGGT | 1 cut(s) | 1318 |
| BsiEI | CGRYCG | 2 cut(s) | 183, 390 |
| BsiHKAI | GWGCWC | 2 cut(s) | 258, 465 |
| BsiHKCI | CYCGRG | 5 cut(s) | 221, 269, 428, 476, 722 |
| BsiWI | CGTACG | 2 cut(s) | 306, 513 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 149, 356, 680, 711, 728, 1310 |
| BsmAI | GTCTC | 3 cut(s) | 590, 934, 1286 |
| BsmBI | CGTCTC | 1 cut(s) | 590 |
| BsmI | GAATGC | 1 cut(s) | 748 |
| BsnI | GGCC | 4 cut(s) | 156, 312, 363, 519 |
| BsoBI | CYCGRG | 5 cut(s) | 221, 269, 428, 476, 722 |
| Bsp119I | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| Bsp1286I | GDGCHC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| Bsp13I | TCCGGA | 1 cut(s) | 528 |
| BspANI | GGCC | 4 cut(s) | 156, 312, 363, 519 |
| BspCNI | CTCAG | 2 cut(s) | 567, 1444 |
| BspEI | TCCGGA | 1 cut(s) | 528 |
| BspFNI | CGCG | 1 cut(s) | 1311 |
| BspLI | GGNNCC | 7 cut(s) | 157, 197, 364, 404, 719, 861, 1222 |
| BspPI | GGATC | 4 cut(s) | 573, 648, 981, 1460 |
| BspT104I | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| BspT107I | GGYRCC | 4 cut(s) | 195, 402, 717, 859 |
| BsrBI | CCGCTC | 2 cut(s) | 571, 631 |
| BsrFI | RCCGGY | 5 cut(s) | 149, 356, 673, 789, 1318 |
| BsrI | ACTGG | 4 cut(s) | 948, 1224, 1396, 1465 |
| BssAI | RCCGGY | 5 cut(s) | 149, 356, 673, 789, 1318 |
| BssECI | CCNNGG | 5 cut(s) | 721, 722, 1094, 1304, 1477 |
| BssNAI | GTATAC | 1 cut(s) | 774 |
| BssNI | GRCGYC | 6 cut(s) | 78, 132, 196, 339, 403, 536 |
| BssT1I | CCWWGG | 2 cut(s) | 1304, 1477 |
| Bst1107I | GTATAC | 1 cut(s) | 774 |
| Bst4CI | ACNGT | 1 cut(s) | 689 |
| Bst6I | CTCTTC | 1 cut(s) | 40 |
| BstACI | GRCGYC | 6 cut(s) | 78, 132, 196, 339, 403, 536 |
| BstBI | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| BstC8I | GCNNGC | 3 cut(s) | 88, 957, 1131 |
| BstDEI | CTNAG | 5 cut(s) | 575, 747, 777, 864, 1452 |
| BstF5I | GGATG | 7 cut(s) | 657, 675, 1012, 1216, 1252, 1381, 1411 |
| BstFNI | CGCG | 1 cut(s) | 1311 |
| BstH2I | RGCGCY | 3 cut(s) | 199, 406, 698 |
| BstHHI | GCGC | 4 cut(s) | 198, 405, 697, 1311 |
| BstMAI | GTCTC | 3 cut(s) | 590, 934, 1286 |
| BstMCI | CGRYCG | 2 cut(s) | 183, 390 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 96, 1135 |
| BstNSI | RCATGY | 1 cut(s) | 1233 |
| BstSCI | CCNGG | 4 cut(s) | 241, 448, 721, 722 |
| BstUI | CGCG | 1 cut(s) | 1311 |
| BstV1I | GCAGC | 2 cut(s) | 588, 684 |
| BstV2I | GAAGAC | 2 cut(s) | 71, 1044 |
| BstX2I | RGATCY | 3 cut(s) | 578, 1282, 1465 |
| BstYI | RGATCY | 3 cut(s) | 578, 1282, 1465 |
| BstZ17I | GTATAC | 1 cut(s) | 774 |
| Bsu36I | CCTNAGG | 1 cut(s) | 864 |
| BsuI | GTATCC | 1 cut(s) | 677 |
| BsuRI | GGCC | 4 cut(s) | 156, 312, 363, 519 |
| BtgZI | GCGATG | 2 cut(s) | 157, 364 |
| BtsCI | GGATG | 7 cut(s) | 657, 675, 1012, 1216, 1252, 1381, 1411 |
| Cac8I | GCNNGC | 3 cut(s) | 88, 957, 1131 |
| CfoI | GCGC | 4 cut(s) | 198, 405, 697, 1311 |
| Cfr10I | RCCGGY | 5 cut(s) | 149, 356, 673, 789, 1318 |
| Cfr13I | GGNCC | 5 cut(s) | 155, 362, 787, 1220, 1316 |
| Cfr9I | CCCGGG | 1 cut(s) | 722 |
| CpoI | CGGWCCG | 1 cut(s) | 787 |
| CseI | GACGC | 5 cut(s) | 86, 140, 347, 525, 607 |
| Csp6I | GTAC | 6 cut(s) | 307, 514, 661, 718, 783, 1227 |
| CspAI | ACCGGT | 1 cut(s) | 1318 |
| CspI | CGGWCCG | 1 cut(s) | 787 |
| CviAII | CATG | 2 cut(s) | 1230, 1418 |
| CviQI | GTAC | 6 cut(s) | 307, 514, 661, 718, 783, 1227 |
| DdeI | CTNAG | 5 cut(s) | 575, 747, 777, 864, 1452 |
| DinI | GGCGCC | 2 cut(s) | 197, 404 |
| Eam1104I | CTCTTC | 1 cut(s) | 40 |
| EarI | CTCTTC | 1 cut(s) | 40 |
| EciI | GGCGGA | 1 cut(s) | 579 |
| Ecl136II | GAGCTC | 2 cut(s) | 256, 463 |
| Eco130I | CCWWGG | 2 cut(s) | 1304, 1477 |
| Eco24I | GRGCYC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| Eco47I | GGWCC | 3 cut(s) | 787, 1220, 1316 |
| Eco53kI | GAGCTC | 2 cut(s) | 256, 463 |
| Eco57I | CTGAAG | 1 cut(s) | 1211 |
| Eco81I | CCTNAGG | 1 cut(s) | 864 |
| Eco88I | CYCGRG | 5 cut(s) | 221, 269, 428, 476, 722 |
| EcoICRI | GAGCTC | 2 cut(s) | 256, 463 |
| EcoRI | GAATTC | 3 cut(s) | 125, 332, 550 |
| EcoT14I | CCWWGG | 2 cut(s) | 1304, 1477 |
| EcoT38I | GRGCYC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| EgeI | GGCGCC | 2 cut(s) | 197, 404 |
| EheI | GGCGCC | 2 cut(s) | 197, 404 |
| ErhI | CCWWGG | 2 cut(s) | 1304, 1477 |
| Esp3I | CGTCTC | 1 cut(s) | 590 |
| FaeI | CATG | 2 cut(s) | 1233, 1421 |
| FaiI | YATR | 8 cut(s) | 774, 810, 897, 1231, 1238, 1244, 1344, 1419 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1272, 1304 |
| FatI | CATG | 2 cut(s) | 1229, 1417 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FblI | GTMKAC | 1 cut(s) | 773 |
| FokI | GGATG | 7 cut(s) | 664, 682, 1019, 1223, 1259, 1388, 1418 |
| FriOI | GRGCYC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| FspBI | CTAG | 2 cut(s) | 1134, 1470 |
| GlaI | GCGC | 4 cut(s) | 197, 404, 696, 1310 |
| GsuI | CTGGAG | 1 cut(s) | 1482 |
| HaeII | RGCGCY | 3 cut(s) | 199, 406, 698 |
| HaeIII | GGCC | 4 cut(s) | 156, 312, 363, 519 |
| HgaI | GACGC | 5 cut(s) | 86, 140, 347, 525, 607 |
| HhaI | GCGC | 4 cut(s) | 198, 405, 697, 1311 |
| Hin1I | GRCGYC | 6 cut(s) | 78, 132, 196, 339, 403, 536 |
| Hin1II | CATG | 2 cut(s) | 1233, 1421 |
| Hin6I | GCGC | 4 cut(s) | 196, 403, 695, 1309 |
| HinP1I | GCGC | 4 cut(s) | 196, 403, 695, 1309 |
| HindIII | AAGCTT | 1 cut(s) | 953 |
| HinfI | GANTC | 7 cut(s) | 272, 293, 479, 500, 542, 732, 814 |
| HphI | GGTGA | 5 cut(s) | 139, 226, 346, 433, 883 |
| Hpy166II | GTNNAC | 3 cut(s) | 774, 1316, 1458 |
| Hpy188III | TCNNGA | 7 cut(s) | 184, 391, 529, 616, 977, 1289, 1385 |
| Hpy8I | GTNNAC | 3 cut(s) | 774, 1316, 1458 |
| Hpy99I | CGWCG | 8 cut(s) | 77, 80, 104, 134, 287, 341, 494, 1126 |
| HpyCH4III | ACNGT | 1 cut(s) | 689 |
| HpyCH4IV | ACGT | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 1 cut(s) | 1298 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 96, 1135 |
| HpyF3I | CTNAG | 5 cut(s) | 575, 747, 777, 864, 1452 |
| HpySE526I | ACGT | 1 cut(s) | 102 |
| Hsp92I | GRCGYC | 6 cut(s) | 78, 132, 196, 339, 403, 536 |
| Hsp92II | CATG | 2 cut(s) | 1233, 1421 |
| HspAI | GCGC | 4 cut(s) | 196, 403, 695, 1309 |
| KasI | GGCGCC | 2 cut(s) | 195, 402 |
| Kpn2I | TCCGGA | 1 cut(s) | 528 |
| KpnI | GGTACC | 1 cut(s) | 721 |
| LmnI | GCTCC | 6 cut(s) | 181, 253, 388, 460, 628, 1060 |
| Lsp1109I | GCAGC | 2 cut(s) | 588, 684 |
| LweI | GCATC | 3 cut(s) | 660, 1366, 1396 |
| MaeI | CTAG | 2 cut(s) | 1134, 1470 |
| MaeII | ACGT | 1 cut(s) | 102 |
| MbiI | CCGCTC | 2 cut(s) | 571, 631 |
| MflI | RGATCY | 3 cut(s) | 578, 1282, 1465 |
| MhlI | GDGCHC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| MluCI | AATT | 7 cut(s) | 113, 125, 320, 332, 550, 611, 1181 |
| Mly113I | GGCGCC | 2 cut(s) | 196, 403 |
| MlyI | GAGTC | 5 cut(s) | 281, 287, 488, 494, 551 |
| MmeI | TCCRAC | 4 cut(s) | 525, 618, 1198, 1257 |
| MroI | TCCGGA | 1 cut(s) | 528 |
| MroXI | GAANNNNTTC | 2 cut(s) | 68, 1284 |
| MseI | TTAA | 2 cut(s) | 882, 993 |
| MspR9I | CCNGG | 4 cut(s) | 243, 450, 723, 724 |
| Mva1269I | GAATGC | 1 cut(s) | 748 |
| MvnI | CGCG | 1 cut(s) | 1311 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 96, 1135 |
| NarI | GGCGCC | 2 cut(s) | 196, 403 |
| NciI | CCSGG | 4 cut(s) | 243, 450, 723, 724 |
| NlaIII | CATG | 2 cut(s) | 1233, 1421 |
| NlaIV | GGNNCC | 7 cut(s) | 157, 197, 364, 404, 719, 861, 1222 |
| NmeAIII | GCCGAG | 1 cut(s) | 1119 |
| NspI | RCATGY | 1 cut(s) | 1233 |
| NspV | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| PaeR7I | CTCGAG | 2 cut(s) | 221, 428 |
| PciI | ACATGT | 1 cut(s) | 1229 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 180, 387 |
| PctI | GAATGC | 1 cut(s) | 748 |
| PdmI | GAANNNNTTC | 2 cut(s) | 68, 1284 |
| PfeI | GAWTC | 2 cut(s) | 732, 814 |
| Pfl23II | CGTACG | 2 cut(s) | 306, 513 |
| PinAI | ACCGGT | 1 cut(s) | 1318 |
| Ple19I | CGATCG | 2 cut(s) | 183, 390 |
| PleI | GAGTC | 5 cut(s) | 280, 287, 487, 494, 550 |
| PluTI | GGCGCC | 2 cut(s) | 199, 406 |
| PpsI | GAGTC | 5 cut(s) | 280, 287, 487, 494, 550 |
| PscI | ACATGT | 1 cut(s) | 1229 |
| Psp124BI | GAGCTC | 2 cut(s) | 258, 465 |
| PspLI | CGTACG | 2 cut(s) | 306, 513 |
| PspN4I | GGNNCC | 7 cut(s) | 157, 197, 364, 404, 719, 861, 1222 |
| PspPI | GGNCC | 5 cut(s) | 155, 362, 787, 1220, 1316 |
| PspXI | VCTCGAGB | 2 cut(s) | 221, 428 |
| PsuI | RGATCY | 3 cut(s) | 578, 1282, 1465 |
| PvuI | CGATCG | 2 cut(s) | 183, 390 |
| RsaI | GTAC | 6 cut(s) | 308, 515, 662, 719, 784, 1228 |
| RsaNI | GTAC | 6 cut(s) | 307, 514, 661, 718, 783, 1227 |
| Rsr2I | CGGWCCG | 1 cut(s) | 787 |
| RsrII | CGGWCCG | 1 cut(s) | 787 |
| SacI | GAGCTC | 2 cut(s) | 258, 465 |
| SaqAI | TTAA | 2 cut(s) | 882, 993 |
| Sau96I | GGNCC | 5 cut(s) | 155, 362, 787, 1220, 1316 |
| SchI | GAGTC | 5 cut(s) | 281, 287, 488, 494, 551 |
| ScrFI | CCNGG | 4 cut(s) | 243, 450, 723, 724 |
| SduI | GDGCHC | 6 cut(s) | 243, 258, 291, 450, 465, 498 |
| SfaNI | GCATC | 3 cut(s) | 660, 1366, 1396 |
| SfoI | GGCGCC | 2 cut(s) | 197, 404 |
| Sfr274I | CTCGAG | 2 cut(s) | 221, 428 |
| SfuI | TTCGAA | 4 cut(s) | 38, 264, 471, 1028 |
| SgrAI | CRCCGGYG | 2 cut(s) | 149, 356 |
| SinI | GGWCC | 3 cut(s) | 787, 1220, 1316 |
| SlaI | CTCGAG | 2 cut(s) | 221, 428 |
| SmaI | CCCGGG | 1 cut(s) | 724 |
| SmlI | CTYRAG | 7 cut(s) | 221, 257, 428, 464, 605, 1289, 1439 |
| SmoI | CTYRAG | 7 cut(s) | 221, 257, 428, 464, 605, 1289, 1439 |
| Sse9I | AATT | 7 cut(s) | 113, 125, 320, 332, 550, 611, 1181 |
| SspDI | GGCGCC | 2 cut(s) | 195, 402 |
| SspI | AATATT | 2 cut(s) | 301, 508 |
| SspMI | CTAG | 2 cut(s) | 1134, 1470 |
| SstI | GAGCTC | 2 cut(s) | 258, 465 |
| StyD4I | CCNGG | 4 cut(s) | 241, 448, 721, 722 |
| StyI | CCWWGG | 2 cut(s) | 1304, 1477 |
| TaaI | ACNGT | 1 cut(s) | 689 |
| TaiI | ACGT | 1 cut(s) | 105 |
| TasI | AATT | 7 cut(s) | 113, 125, 320, 332, 550, 611, 1181 |
| TatI | WGTACW | 1 cut(s) | 1226 |
| TfiI | GAWTC | 2 cut(s) | 732, 814 |
| Tru1I | TTAA | 2 cut(s) | 882, 993 |
| Tru9I | TTAA | 2 cut(s) | 882, 993 |
| TseI | GCWGC | 2 cut(s) | 601, 697 |
| TspDTI | ATGAA | 4 cut(s) | 17, 227, 434, 797 |
| TspGWI | ACGGA | 3 cut(s) | 271, 478, 800 |
| TspMI | CCCGGG | 1 cut(s) | 722 |
| VpaK11BI | GGWCC | 3 cut(s) | 787, 1220, 1316 |
| XapI | RAATTY | 4 cut(s) | 125, 332, 550, 611 |
| XceI | RCATGY | 1 cut(s) | 1233 |
| XhoI | CTCGAG | 2 cut(s) | 221, 428 |
| XmaI | CCCGGG | 1 cut(s) | 722 |
| XmiI | GTMKAC | 1 cut(s) | 773 |
| XmnI | GAANNNNTTC | 2 cut(s) | 68, 1284 |
| XspI | CTAG | 2 cut(s) | 1134, 1470 |