AT1G34020

purine nucleotide-sugar transmembrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017076
Physical Location & Seq
Forward (+)
12366810 .. 12370014
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34020.3

Sequence Viewer

Length: 1008 bp
ATGGCTCCAGTGAGTAAAGCTGATAAGAAGGCAGCCGTAGATGCTGCTGCGTGGATGTTCAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTATAGCTTTGCTACAACGTTAACTGGTTTACATTTCGCTACAACGACTCTGATGACGCTTGTTTTAAGATGTCTTGGTTACATTCAGCCTTCTCATCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGATTGCTAAGCTCAGCATGATTCCTGTATCTTGTTTGTTGGAAATGGTTTTCGATAAGATTCGTTATTCCAGAGATACAAAGCTTAGCATAGGACTGGTTCTTGTGGGTGTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGATTTGTAGCCGCTTTCGTTGCTGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTCAGCGCAAGTACTCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCCGCAACATTACTGGTAGTTGGCCCGTTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACATGTACGATTACAACTTGGTTTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATTGGAACCAACCTAAGCCAGTTCATCTGCATCGGAAGATTCACAGCTGTATCGTTCCAAGTGCTGGGACACATGAAGACGATCCTGGTGCTGATAATGGGCTTCTTCTTCTTTGGTAGAGAAGGTCTTAACTTGCACGTGGTTGTTGGAATGATAATTGCAGTACTGGGTATGATCTGGTACGGTAATGCCTCTTCGAAGCCAGGAGGCAAAGAGCGACGAAACTATTCTCTTCCAACTACCCGTCAACAGAAACTCGGAGCTGCTTCGGATTCTGACGACAACGAAGACAAAGCCTAG

Protein Analysis

335

Amino Acids

36.94

Weight (kDa)

9.2

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 297 3.3e-13 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AccB7I CCANNNNNTGG 1 cut(s) 772
AccBSI CCGCTC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 648
AciI CCGC 3 cut(s) 477, 576, 591
AclI AACGTT 1 cut(s) 137
AclWI GGATC 1 cut(s) 784
AcuI CTGAAG 1 cut(s) 515
AcvI CACGTG 1 cut(s) 847
AfaI GTAC 6 cut(s) 499, 522, 542, 656, 873, 890
AfiI CCNNNNNNNGG 1 cut(s) 772
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 2 cut(s) 61, 559
AjnI CCWGG 2 cut(s) 792, 910
AluBI AGCT 8 cut(s) 20, 101, 126, 232, 325, 397, 755, 971
AluI AGCT 8 cut(s) 20, 101, 126, 232, 325, 397, 755, 971
Alw21I GWGCWC 1 cut(s) 701
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 1 cut(s) 784
AoxI GGCC 1 cut(s) 610
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 4 cut(s) 32, 44, 47, 971
Asp700I GAANNNNTTC 1 cut(s) 934
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 611
AsuII TTCGAA 1 cut(s) 905
BaeGI GKGCMC 1 cut(s) 701
BaeI ACNNNNGTAYC 2 cut(s) 741, 774
BarI GAAGNNNNNNTAC 4 cut(s) 513, 545, 886, 918
BbrPI CACGTG 1 cut(s) 847
BbsI GAAGAC 2 cut(s) 791, 1002
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 4 cut(s) 31, 34, 44, 958
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 2 cut(s) 794, 912
BfaI CTAG 1 cut(s) 1006
BisI GCNGC 6 cut(s) 33, 45, 48, 477, 591, 972
BlpI GCTNAGC 3 cut(s) 321, 326, 398
BlsI GCNGC 6 cut(s) 34, 46, 49, 478, 592, 973
BmcAI AGTACT 3 cut(s) 499, 542, 873
Bme1390I CCNGG 2 cut(s) 794, 912
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 2 cut(s) 6, 715
BmrFI CCNGG 2 cut(s) 794, 912
BmrI ACTGGG 1 cut(s) 884
BmsI GCATC 2 cut(s) 31, 747
BmuI ACTGGG 1 cut(s) 884
BpiI GAAGAC 2 cut(s) 791, 1002
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 722
Bpu1102I GCTNAGC 3 cut(s) 321, 326, 398
Bpu14I TTCGAA 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 847
Bsc4I CCNNNNNNNGG 1 cut(s) 772
Bse1I ACTGG 6 cut(s) 8, 148, 414, 606, 727, 879
BseBI CCWGG 2 cut(s) 794, 912
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 772
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 6 cut(s) 8, 148, 414, 606, 727, 879
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 4 cut(s) 31, 34, 44, 958
BseYI CCCAGC 1 cut(s) 772
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 701
BslFI GGGAC 2 cut(s) 582, 789
BslI CCNNNNNNNGG 1 cut(s) 772
BsmFI GGGAC 2 cut(s) 582, 789
BsnI GGCC 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 905
Bsp1286I GDGCHC 1 cut(s) 701
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 2 cut(s) 789, 882
Bsp1720I GCTNAGC 3 cut(s) 321, 326, 398
BspACI CCGC 3 cut(s) 477, 576, 591
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 6, 715
BspPI GGATC 1 cut(s) 784
BspT104I TTCGAA 1 cut(s) 905
BsrBI CCGCTC 1 cut(s) 578
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 6 cut(s) 8, 148, 414, 606, 727, 879
BssMI GATC 2 cut(s) 789, 882
Bst2UI CCWGG 2 cut(s) 794, 912
Bst4CI ACNGT 2 cut(s) 439, 893
Bst6I CTCTTC 2 cut(s) 907, 945
BstAUI TGTACA 1 cut(s) 520
BstBAI YACGTR 1 cut(s) 847
BstBI TTCGAA 1 cut(s) 905
BstDEI CTNAG 4 cut(s) 321, 326, 398, 722
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 2 cut(s) 792, 885
BstMBI GATC 2 cut(s) 789, 882
BstMWI GCNNNNNNNGC 4 cut(s) 41, 107, 485, 590
BstNI CCWGG 2 cut(s) 794, 912
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 2 cut(s) 792, 910
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 31, 34, 44, 958
BstV2I GAAGAC 2 cut(s) 791, 1002
BsuRI GGCC 1 cut(s) 612
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 15, 435, 681
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 1 cut(s) 184
Csp6I GTAC 6 cut(s) 498, 521, 541, 655, 872, 889
CviAII CATG 3 cut(s) 331, 652, 781
CviQI GTAC 6 cut(s) 498, 521, 541, 655, 872, 889
DdeI CTNAG 4 cut(s) 321, 326, 398, 722
DpnI GATC 2 cut(s) 791, 884
DpnII GATC 2 cut(s) 789, 882
Eam1104I CTCTTC 2 cut(s) 907, 945
EarI CTCTTC 2 cut(s) 907, 945
Eco57I CTGAAG 1 cut(s) 515
Eco72I CACGTG 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 792, 910
FaeI CATG 3 cut(s) 334, 655, 784
FaqI GGGAC 2 cut(s) 582, 789
FatI CATG 3 cut(s) 330, 651, 780
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 6 cut(s) 33, 45, 48, 477, 591, 972
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 6 cut(s) 33, 45, 48, 477, 591, 972
FspBI CTAG 1 cut(s) 1006
GlaI GCGC 1 cut(s) 536
GluI GCNGC 6 cut(s) 33, 45, 48, 477, 591, 972
GsaI CCCAGC 1 cut(s) 776
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 612
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 537
Hin1II CATG 3 cut(s) 334, 655, 784
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 2 cut(s) 141, 956
HindII GTYRAC 2 cut(s) 141, 956
HindIII AAGCTT 2 cut(s) 99, 395
HinfI GANTC 5 cut(s) 166, 334, 373, 747, 980
HpaI GTTAAC 1 cut(s) 141
Hpy166II GTNNAC 7 cut(s) 141, 149, 225, 457, 649, 699, 956
Hpy188I TCNGA 6 cut(s) 171, 315, 743, 968, 979, 985
Hpy188III TCNNGA 2 cut(s) 384, 620
Hpy8I GTNNAC 7 cut(s) 141, 149, 225, 457, 649, 699, 956
Hpy99I CGWCG 1 cut(s) 930
HpyAV CCTTC 4 cut(s) 22, 219, 539, 824
HpyCH4III ACNGT 2 cut(s) 439, 893
HpyCH4IV ACGT 2 cut(s) 137, 846
HpyCH4V TGCA 6 cut(s) 435, 508, 699, 738, 844, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 107, 485, 590
HpyF3I CTNAG 4 cut(s) 321, 326, 398, 722
HpySE526I ACGT 2 cut(s) 137, 846
Hsp92II CATG 3 cut(s) 334, 655, 784
HspAI GCGC 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 789, 882
LmnI GCTCC 4 cut(s) 10, 229, 583, 968
Lsp1109I GCAGC 4 cut(s) 31, 34, 44, 958
LweI GCATC 2 cut(s) 31, 747
MaeI CTAG 1 cut(s) 1006
MaeII ACGT 2 cut(s) 137, 846
MaeIII GTNAC 3 cut(s) 67, 197, 439
MalI GATC 2 cut(s) 791, 884
MbiI CCGCTC 1 cut(s) 578
MboI GATC 2 cut(s) 789, 882
MboII GAAGA 8 cut(s) 209, 756, 796, 805, 808, 894, 932, 1007
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 2 cut(s) 256, 864
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 4 cut(s) 250, 333, 835, 968
MnlI CCTC 2 cut(s) 908, 910
MroXI GAANNNNTTC 1 cut(s) 934
MseI TTAA 6 cut(s) 93, 104, 140, 185, 549, 837
MspA1I CMGCKG 1 cut(s) 755
MspR9I CCNGG 2 cut(s) 794, 912
MvaI CCWGG 2 cut(s) 794, 912
MwoI GCNNNNNNNGC 4 cut(s) 41, 107, 485, 590
NdeII GATC 2 cut(s) 789, 882
NlaIII CATG 3 cut(s) 334, 655, 784
NlaIV GGNNCC 2 cut(s) 6, 715
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 655
NspV TTCGAA 1 cut(s) 905
PciI ACATGT 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 934
PfeI GAWTC 4 cut(s) 334, 373, 747, 980
PflMI CCANNNNNTGG 1 cut(s) 772
PkrI GCNGC 6 cut(s) 34, 46, 49, 478, 592, 973
PleI GAGTC 1 cut(s) 160
PmaCI CACGTG 1 cut(s) 847
PmlI CACGTG 1 cut(s) 847
PpsI GAGTC 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 847
PscI ACATGT 1 cut(s) 651
PsiI TTATAA 1 cut(s) 686
Psp1406I AACGTT 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 792, 910
PspCI CACGTG 1 cut(s) 847
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 2 cut(s) 792, 910
PspN4I GGNNCC 2 cut(s) 6, 715
PspPI GGNCC 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 6 cut(s) 499, 522, 542, 656, 873, 890
RsaNI GTAC 6 cut(s) 498, 521, 541, 655, 872, 889
SaqAI TTAA 6 cut(s) 93, 104, 140, 185, 549, 837
SatI GCNGC 6 cut(s) 33, 45, 48, 477, 591, 972
Sau3AI GATC 2 cut(s) 789, 882
Sau96I GGNCC 1 cut(s) 611
ScaI AGTACT 3 cut(s) 499, 542, 873
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 794, 912
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 31, 747
SfuI TTCGAA 1 cut(s) 905
Sse9I AATT 2 cut(s) 256, 864
SsiI CCGC 3 cut(s) 477, 576, 591
SspMI CTAG 1 cut(s) 1006
StyD4I CCNGG 2 cut(s) 792, 910
TaaI ACNGT 2 cut(s) 439, 893
TaiI ACGT 2 cut(s) 140, 849
TaqI TCGA 2 cut(s) 366, 905
TasI AATT 2 cut(s) 256, 864
TatI WGTACW 4 cut(s) 497, 520, 540, 871
TauI GCSGC 2 cut(s) 479, 593
TfiI GAWTC 4 cut(s) 334, 373, 747, 980
Tru1I TTAA 6 cut(s) 93, 104, 140, 185, 549, 837
Tru9I TTAA 6 cut(s) 93, 104, 140, 185, 549, 837
TscAI CASTG 3 cut(s) 15, 442, 681
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 32, 44, 47, 971
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 290, 721, 797
TspGWI ACGGA 2 cut(s) 210, 242
TspRI CASTG 3 cut(s) 15, 442, 681
Van91I CCANNNNNTGG 1 cut(s) 772
VneI GTGCAC 1 cut(s) 697
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 934
XspI CTAG 1 cut(s) 1006
ZrmI AGTACT 3 cut(s) 499, 542, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.