pycom10g02260

UDP-galactose transporter 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017076
Physical Location & Seq
Forward (+)
2498747 .. 2500705
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02260.1

Sequence Viewer

Length: 1005 bp
ATGGCTCCCAATAGCAAAGCTGATAAGAAGGCGGCAGATGCAGCCGCATGGATGTTCAATGTCGTAACTTCTGTTGGGATCATAATTGTCAATAAAGCTCTAATGGCTACATATGGCTTCAGTTTTGCTACAACATTAACTGGTTTGCATTTTGCTACAACAACTTTGATGACGGTTGTTCTAAGGTGGCTGGGATACATTCAACCGTCGCATCTACCTGTCTCTGAGCTTCTAAAATTTATGGTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTGAGTCTAATGTGGAACTCAGTGGGATTTTATCAGATAGCAAAGCTGAGCATGATCCCCGTGTCATGTTTACTGGAAGTTGTTCTTGACAAGATTCGTTACTCAAGAGACACAAAGTTGAGCATAGGAATTGTTCTCTTGGGAGTTGGTGTTTGCACTGTCACTGATGTGAGTGTCAATGCCAAGGGCTTCATTGCTGCCTTTATAGCTGTATGGAGCACTGCACTACAACAATATTATGTGCACTTTCTTCAACGGAAATATTCACTCGGTTCTTTCAGTCTGTTGGGACATACTGCTCCAGCCCATGATGGATCTCTTCTGTTACTCGGCCCCTTCCTTGACTATTGGTTGACAAACAAGAGAGTTGATGCCTATGATTATAACTTTGGATCTCTGATGTTTATAATTCTTTCATGCACAATCGCAGTAGGCACCAATCTCAGCCAGTTCATCTGTATTGGAAGATTTACCGCTGTGTCCTTCCAAGTACTGGGGCATATGAAAACAATTCTTGTTTTGATCATGGGATTCTTTTTCTTTGGGAAGGAGGGTCTGAATCTGCATGTTGTTTTGGGAATGATCATAGCTGTGGTTGGGATGATTTGGTATGGAAATGCCTCGTCTAAGCCCGGTGGAAAGGAGCGTCGGAGCCACTCTCTCCCTACAAGCAGGCAACAAAAACAAGGTGGTTTTCCTGAATCTACTGAACATGACGGAAAAGTTTAA

Protein Analysis

335

Amino Acids

36.66

Weight (kDa)

9.44

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 22 - 296 6.2e-13 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 660, 683
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 769
AciI CCGC 3 cut(s) 32, 45, 750
AclWI GGATC 4 cut(s) 86, 325, 598, 676
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 103
AfaI GTAC 1 cut(s) 768
AfiI CCNNNNNNNGG 1 cut(s) 769
AgsI TTSAA 3 cut(s) 58, 203, 530
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 6 cut(s) 20, 98, 229, 322, 485, 866
AluI AGCT 6 cut(s) 20, 98, 229, 322, 485, 866
Alw21I GWGCWC 2 cut(s) 497, 522
Alw26I GTCTC 2 cut(s) 226, 378
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 4 cut(s) 86, 325, 598, 676
AoxI GGCC 1 cut(s) 607
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 2 cut(s) 41, 473
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 608
AsuC2I CCSGG 1 cut(s) 909
BaeGI GKGCMC 1 cut(s) 522
BanI GGYRCC 1 cut(s) 710
Bbv12I GWGCWC 2 cut(s) 497, 522
BbvI GCAGC 2 cut(s) 53, 460
BccI CCATC 1 cut(s) 581
BciVI GTATCC 1 cut(s) 188
BclI TGATCA 2 cut(s) 798, 858
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 2 cut(s) 226, 378
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 4 cut(s) 33, 42, 45, 474
BlpI GCTNAGC 1 cut(s) 323
BlsI GCNGC 4 cut(s) 34, 43, 46, 475
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 4 cut(s) 6, 610, 712, 929
BmrFI CCNGG 1 cut(s) 909
BmrI ACTGGG 1 cut(s) 779
BmsI GCATC 3 cut(s) 28, 220, 637
BmuI ACTGGG 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 919, 951
BpmI CTGGAG 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 909
BsaJI CCNNGG 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse1I ACTGG 4 cut(s) 145, 354, 724, 774
Bse3DI GCAATG 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 2 cut(s) 57, 882
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 4 cut(s) 216, 309, 314, 733
BseNI ACTGG 4 cut(s) 145, 354, 724, 774
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 2 cut(s) 53, 460
BseYI CCCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 1 cut(s) 609
BshNI GGYRCC 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 497, 522
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 769
BsmAI GTCTC 2 cut(s) 226, 378
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 1 cut(s) 609
Bsp1286I GDGCHC 2 cut(s) 497, 522
Bsp143I GATC 6 cut(s) 78, 330, 590, 668, 798, 858
Bsp1720I GCTNAGC 1 cut(s) 323
BspACI CCGC 3 cut(s) 32, 45, 750
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 4 cut(s) 217, 308, 315, 732
BspLI GGNNCC 4 cut(s) 6, 610, 712, 929
BspPI GGATC 4 cut(s) 86, 325, 598, 676
BspT107I GGYRCC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 4 cut(s) 145, 354, 724, 774
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 6 cut(s) 78, 330, 590, 668, 798, 858
BssT1I CCWWGG 1 cut(s) 459
Bst4CI ACNGT 3 cut(s) 175, 207, 436
Bst6I CTCTTC 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 950
BstDEI CTNAG 6 cut(s) 182, 225, 295, 323, 719, 903
BstF5I GGATG 2 cut(s) 57, 882
BstKTI GATC 6 cut(s) 81, 333, 593, 671, 801, 861
BstMAI GTCTC 2 cut(s) 226, 378
BstMBI GATC 6 cut(s) 78, 330, 590, 668, 798, 858
BstMWI GCNNNNNNNGC 4 cut(s) 38, 41, 104, 482
BstNSI RCATGY 1 cut(s) 845
BstSCI CCNGG 1 cut(s) 907
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 53, 460
BstX2I RGATCY 2 cut(s) 590, 668
BstYI RGATCY 2 cut(s) 590, 668
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 609
BtsCI GGATG 2 cut(s) 57, 882
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 4 cut(s) 303, 432, 438, 495
Cac8I GCNNGC 1 cut(s) 950
Cfr13I GGNCC 1 cut(s) 608
CseI GACGC 1 cut(s) 911
Csp6I GTAC 1 cut(s) 767
CviAII CATG 8 cut(s) 48, 328, 342, 584, 693, 802, 842, 989
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 6 cut(s) 182, 225, 295, 323, 719, 903
DpnI GATC 6 cut(s) 80, 332, 592, 670, 800, 860
DpnII GATC 6 cut(s) 78, 330, 590, 668, 798, 858
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 8 cut(s) 51, 331, 345, 587, 696, 805, 845, 992
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 579
FatI CATG 8 cut(s) 47, 327, 341, 583, 692, 801, 841, 988
FauNDI CATATG 2 cut(s) 112, 777
FbaI TGATCA 2 cut(s) 798, 858
Fnu4HI GCNGC 4 cut(s) 33, 42, 45, 474
FokI GGATG 2 cut(s) 64, 889
Fsp4HI GCNGC 4 cut(s) 33, 42, 45, 474
GluI GCNGC 4 cut(s) 33, 42, 45, 474
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 1 cut(s) 609
HapII CCGG 1 cut(s) 909
HgaI GACGC 1 cut(s) 911
Hin1II CATG 8 cut(s) 51, 331, 345, 587, 696, 805, 845, 992
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 5 cut(s) 280, 370, 807, 835, 977
HpaII CCGG 1 cut(s) 909
Hpy166II GTNNAC 3 cut(s) 347, 520, 630
Hpy188I TCNGA 5 cut(s) 226, 312, 675, 834, 927
Hpy188III TCNNGA 3 cut(s) 362, 381, 974
Hpy8I GTNNAC 3 cut(s) 347, 520, 630
Hpy99I CGWCG 2 cut(s) 211, 927
HpyAV CCTTC 4 cut(s) 22, 622, 769, 817
HpyCH4III ACNGT 3 cut(s) 175, 207, 436
HpyCH4V TGCA 7 cut(s) 41, 148, 432, 500, 520, 696, 841
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 41, 104, 482
HpyF3I CTNAG 6 cut(s) 182, 225, 295, 323, 719, 903
Hsp92II CATG 8 cut(s) 51, 331, 345, 587, 696, 805, 845, 992
Ksp22I TGATCA 2 cut(s) 798, 858
Kzo9I GATC 6 cut(s) 78, 330, 590, 668, 798, 858
LmnI GCTCC 5 cut(s) 10, 492, 580, 919, 927
Lsp1109I GCAGC 2 cut(s) 53, 460
LweI GCATC 3 cut(s) 28, 220, 637
MaeIII GTNAC 4 cut(s) 64, 374, 436, 600
MalI GATC 6 cut(s) 80, 332, 592, 670, 800, 860
MboI GATC 6 cut(s) 78, 330, 590, 668, 798, 858
MboII GAAGA 3 cut(s) 518, 587, 753
MflI RGATCY 2 cut(s) 590, 668
MhlI GDGCHC 2 cut(s) 497, 522
MluCI AATT 5 cut(s) 84, 236, 405, 684, 786
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 247, 905
MnlI CCTC 2 cut(s) 820, 907
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 137, 1003
MslI CAYNNNNRTG 2 cut(s) 443, 866
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 1 cut(s) 909
MwoI GCNNNNNNNGC 4 cut(s) 38, 41, 104, 482
NciI CCSGG 1 cut(s) 909
NdeI CATATG 2 cut(s) 112, 777
NdeII GATC 6 cut(s) 78, 330, 590, 668, 798, 858
NlaIII CATG 8 cut(s) 51, 331, 345, 587, 696, 805, 845, 992
NlaIV GGNNCC 4 cut(s) 6, 610, 712, 929
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 845
OliI CACNNNNGTG 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 4 cut(s) 370, 807, 835, 977
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 4 cut(s) 34, 43, 46, 475
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PsiI TTATAA 2 cut(s) 660, 683
PspFI CCCAGC 1 cut(s) 190
PspN4I GGNNCC 4 cut(s) 6, 610, 712, 929
PspPI GGNCC 1 cut(s) 608
PsuI RGATCY 2 cut(s) 590, 668
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 2 cut(s) 443, 866
SaqAI TTAA 2 cut(s) 137, 1003
SatI GCNGC 4 cut(s) 33, 42, 45, 474
Sau3AI GATC 6 cut(s) 78, 330, 590, 668, 798, 858
Sau96I GGNCC 1 cut(s) 608
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 909
SduI GDGCHC 2 cut(s) 497, 522
SetI ASST 9 cut(s) 22, 100, 188, 220, 231, 324, 487, 868, 967
SfaNI GCATC 3 cut(s) 28, 220, 637
SmiMI CAYNNNNRTG 2 cut(s) 443, 866
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 5 cut(s) 84, 236, 405, 684, 786
SsiI CCGC 3 cut(s) 32, 45, 750
SspI AATATT 2 cut(s) 512, 539
StyD4I CCNGG 1 cut(s) 907
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 3 cut(s) 175, 207, 436
TasI AATT 5 cut(s) 84, 236, 405, 684, 786
TatI WGTACW 1 cut(s) 766
TauI GCSGC 2 cut(s) 35, 47
TfiI GAWTC 4 cut(s) 370, 807, 835, 977
Tru1I TTAA 2 cut(s) 137, 1003
Tru9I TTAA 2 cut(s) 137, 1003
TscAI CASTG 4 cut(s) 303, 439, 445, 502
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 2 cut(s) 41, 473
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 5 cut(s) 287, 457, 681, 718, 794
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 4 cut(s) 303, 439, 445, 502
Van91I CCANNNNNTGG 1 cut(s) 769
VneI GTGCAC 1 cut(s) 518
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.