Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017076

Physical Location & Seq

Genomic Coordinates Forward (+)

2846607 .. 2849189

Gene Structure 2583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTCCCACTAGCAAAGCTGATAAGAAGGCAGGAGATGTAGCTGCATGGATGTTCAATGTTGTAACTTCTGTTGGGATTATAATTGTCAATAAAGCTCTGATGGCTACATATGGCTTCAGTTTTGCTACAACATTAACTGGTTTGCATTTTGCTACGACAACTTTGATGACACTTGTTCTAAGGTGGCTGGGATACATTCAACCCTCGCATCTACCTGTCTCTGAGCTTCTAAAATTTATGGTCTTTGCTAACTTCTCTATTGTTGGAATGAACGTGAGTCTAATGTGGAACTCAGTGGGATTTTATCAGAGCAAAGCTGAGTATGATCGACCCGTGTCATGTTTACTGGAAGTTGTTCTCGACAAGATCCGTTACTCAAGAGATACAAAGTTGAGCATAGGAATTGTTCTCTTGGGAGTTGGTGTTTGCACCGTCACTGATGTGAGTGTCAATGCCAAAGGCTTCATTGCTGCCTTTATAGCTGTATGGAGCACTTCGCTACAACAGTATTATGTGCACTTTCTTCAACGGAAATATTCACTCGGTTCTTTCAGTCTGTTGGGACATACTGCTCCGGCCCAGGCTGGATCGATCGATCTTCTGTTACTCGGCCCCTTCCTTGACTATTGGCTGACAAACAAGAGGGTTGATGCCTATGACTATAACTTTGGATCTCTGATGTTTATAATTCTCTCATGCACAATCGCAGTAGGCACCAATCTCAGCCAGTTCATCTGCATTGGAAGATTTACCGCTGTGTCCTTCCAAGTACTGGGGCATATGAAGACAATTCTTGTTTTGATCATGGGGTTCTTTTTCTTTGGGAAGGAGGGTCTGAATCTGCATGTTGTATTGGGAATGATCATAGCTGTGGTTGGGATGATTTGGTATGGAAATGCCTCGTCTAAGCCCGGTGGAAAAGAGCGTTGGAGCCACTCTCTCCCTACGAGCAGGCAACAAAAACACGGTGGTTTTCCTGAATCTACTGAACATGATGGAAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0016020 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

337

Amino Acids

36.99

Weight (kDa)

9.26

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 298	1.4e-11	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34020 AT1G34020 AT1G34020 AT4G09810 AT4G09810 AT4G09810
malus_domestica	MD05G1033300.v1.1 MD10G1034100.v1.1
prunus_persica	Prupe.8G040500_v2.0.a1 Prupe.8G040500_v2.0.a1 Prupe.8G040500_v2.0.a1
pyrus_communis	pycom05g02410 pycom10g02260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	83, 689
AccB1I	GGYRCC	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	775
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	3 cut(s)	364, 598, 682
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	3 cut(s)	58, 203, 530
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	913, 945
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	7 cut(s)	20, 44, 98, 229, 320, 485, 872
AluI	AGCT	7 cut(s)	20, 44, 98, 229, 320, 485, 872
Alw21I	GWGCWC	2 cut(s)	497, 522
Alw26I	GTCTC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	3 cut(s)	364, 598, 682
AoxI	GGCC	2 cut(s)	579, 613
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	44, 473
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	580, 614
AsuC2I	CCSGG	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	2 cut(s)	497, 522
BbvI	GCAGC	2 cut(s)	31, 460
BccI	CCATC	2 cut(s)	97, 992
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	804, 864
BcnI	CCSGG	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	45, 474
BlsI	GCNGC	2 cut(s)	46, 475
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	2 cut(s)	584, 915
BmgT120I	GGNCC	2 cut(s)	580, 614
BmiI	GGNNCC	4 cut(s)	6, 616, 718, 935
BmrFI	CCNGG	2 cut(s)	584, 915
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	2 cut(s)	220, 643
BmuI	ACTGGG	1 cut(s)	785
BoxI	GACNNNNGTC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	925, 957
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	915
Bsa29I	ATCGAT	2 cut(s)	593, 597
BsaJI	CCNNGG	1 cut(s)	582
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	4 cut(s)	145, 354, 730, 780
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	2 cut(s)	593, 597
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	57, 888
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	216, 309, 312, 739
BseNI	ACTGG	4 cut(s)	145, 354, 730, 780
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	31, 460
BseYI	CCCAGC	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	581, 615
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	2 cut(s)	593, 597
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	497, 522
BsiSI	CCGG	2 cut(s)	578, 915
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	2 cut(s)	581, 615
Bsp1286I	GDGCHC	2 cut(s)	497, 522
Bsp143I	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	2 cut(s)	581, 615
BspCNI	CTCAG	4 cut(s)	217, 308, 313, 738
BspDI	ATCGAT	2 cut(s)	593, 597
BspLI	GGNNCC	4 cut(s)	6, 616, 718, 935
BspPI	GGATC	3 cut(s)	364, 598, 682
BspT107I	GGYRCC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	4 cut(s)	145, 354, 730, 780
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	436, 510, 971
BstC8I	GCNNGC	1 cut(s)	956
BstDEI	CTNAG	6 cut(s)	182, 225, 295, 321, 725, 909
BstF5I	GGATG	2 cut(s)	57, 888
BstKTI	GATC	8 cut(s)	331, 372, 593, 597, 601, 677, 807, 867
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 482
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	851
BstPAI	GACNNNNGTC	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	582, 913
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	31, 460
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	2 cut(s)	369, 674
BstYI	RGATCY	2 cut(s)	369, 674
Bsu15I	ATCGAT	2 cut(s)	593, 597
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	581, 615
BsuTUI	ATCGAT	2 cut(s)	593, 597
BtsCI	GGATG	2 cut(s)	57, 888
BtsIMutI	CAGTG	2 cut(s)	303, 438
Cac8I	GCNNGC	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	580, 614
ClaI	ATCGAT	2 cut(s)	593, 597
Csp6I	GTAC	1 cut(s)	773
CviAII	CATG	6 cut(s)	48, 342, 699, 808, 848, 995
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	6 cut(s)	182, 225, 295, 321, 725, 909
DpnI	GATC	8 cut(s)	330, 371, 592, 596, 600, 676, 806, 866
DpnII	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
Eco57I	CTGAAG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	582
FaeI	CATG	6 cut(s)	51, 345, 702, 811, 851, 998
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	6 cut(s)	47, 341, 698, 807, 847, 994
FauNDI	CATATG	2 cut(s)	112, 783
FbaI	TGATCA	2 cut(s)	804, 864
Fnu4HI	GCNGC	2 cut(s)	45, 474
FokI	GGATG	2 cut(s)	64, 895
Fsp4HI	GCNGC	2 cut(s)	45, 474
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	45, 474
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	581, 615
HapII	CCGG	2 cut(s)	578, 915
Hin1II	CATG	6 cut(s)	51, 345, 702, 811, 851, 998
HinfI	GANTC	3 cut(s)	280, 841, 983
HpaII	CCGG	2 cut(s)	578, 915
Hpy166II	GTNNAC	2 cut(s)	347, 520
Hpy188I	TCNGA	5 cut(s)	102, 226, 312, 681, 840
Hpy188III	TCNNGA	3 cut(s)	362, 381, 980
Hpy8I	GTNNAC	2 cut(s)	347, 520
HpyAV	CCTTC	4 cut(s)	22, 628, 775, 823
HpyCH4III	ACNGT	3 cut(s)	436, 510, 971
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	7 cut(s)	47, 148, 432, 520, 702, 741, 847
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 482
HpyF3I	CTNAG	6 cut(s)	182, 225, 295, 321, 725, 909
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	6 cut(s)	51, 345, 702, 811, 851, 998
Ksp22I	TGATCA	2 cut(s)	804, 864
Kzo9I	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
LmnI	GCTCC	4 cut(s)	10, 492, 580, 933
Lsp1109I	GCAGC	2 cut(s)	31, 460
LweI	GCATC	2 cut(s)	220, 643
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	4 cut(s)	64, 374, 436, 606
MalI	GATC	8 cut(s)	330, 371, 592, 596, 600, 676, 806, 866
MboI	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
MboII	GAAGA	4 cut(s)	518, 593, 759, 799
MflI	RGATCY	2 cut(s)	369, 674
MhlI	GDGCHC	2 cut(s)	497, 522
MluCI	AATT	5 cut(s)	84, 236, 405, 690, 792
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	2 cut(s)	247, 911
MnlI	CCTC	4 cut(s)	217, 639, 826, 913
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	137, 1009
MslI	CAYNNNNRTG	2 cut(s)	443, 872
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	2 cut(s)	578, 915
MspR9I	CCNGG	2 cut(s)	584, 915
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	104, 482
NciI	CCSGG	1 cut(s)	915
NdeI	CATATG	2 cut(s)	112, 783
NdeII	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
NlaIII	CATG	6 cut(s)	51, 345, 702, 811, 851, 998
NlaIV	GGNNCC	4 cut(s)	6, 616, 718, 935
NmeAIII	GCCGAG	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	851
OliI	CACNNNNGTG	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	841, 983
PflMI	CCANNNNNTGG	1 cut(s)	775
PkrI	GCNGC	2 cut(s)	46, 475
Ple19I	CGATCG	1 cut(s)	597
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PshAI	GACNNNNGTC	1 cut(s)	337
PsiI	TTATAA	2 cut(s)	83, 689
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	4 cut(s)	6, 616, 718, 935
PspPI	GGNCC	2 cut(s)	580, 614
PsuI	RGATCY	2 cut(s)	369, 674
PvuI	CGATCG	1 cut(s)	597
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
RseI	CAYNNNNRTG	2 cut(s)	443, 872
SaqAI	TTAA	2 cut(s)	137, 1009
SatI	GCNGC	2 cut(s)	45, 474
Sau3AI	GATC	8 cut(s)	328, 369, 590, 594, 598, 674, 804, 864
Sau96I	GGNCC	2 cut(s)	580, 614
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	584, 915
SduI	GDGCHC	2 cut(s)	497, 522
SfaNI	GCATC	2 cut(s)	220, 643
SmiMI	CAYNNNNRTG	2 cut(s)	443, 872
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	84, 236, 405, 690, 792
SsiI	CCGC	1 cut(s)	756
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	582, 913
TaaI	ACNGT	3 cut(s)	436, 510, 971
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	331, 363, 593, 597
TasI	AATT	5 cut(s)	84, 236, 405, 690, 792
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	2 cut(s)	841, 983
Tru1I	TTAA	2 cut(s)	137, 1009
Tru9I	TTAA	2 cut(s)	137, 1009
TscAI	CASTG	2 cut(s)	303, 445
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	44, 473
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	287, 457, 724, 800
TspGWI	ACGGA	2 cut(s)	362, 547
TspRI	CASTG	2 cut(s)	303, 445
Van91I	CCANNNNNTGG	1 cut(s)	775
VneI	GTGCAC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.