Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0017076

Physical Location & Seq

Genomic Coordinates Forward (+)

5377629 .. 5381798

Gene Structure 4170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1033300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTCCCACTAGCAAAGCTGATAAGAAGGCAGGAGATGTAGCTGCATGGATGTTCAATGTTGTAACTTCTGTTGGGATTATAATTGTCAATAAAGCTCTGATGGCTACATATGGCTTCAGTTTTGCTACAACATTAACTGGTTTGCATTTTGCTACAACAACTTTGATGACGCTTGTTCTAAGGTGGCTGGGATACATTCAACCCTCGCATCTACCTGTCTCTGAGCTTCTAAAATTTATGGTCTTTGCTAACTTCTCTATTGTTGGAATGAACGTGAGTCTAATGTGGAACTCAGTGGGATTTTATCAGATAGCAAAGCTGAGTATGATCCCCGTGTCATGTTTACTGGAAGTTGTTCTCGACAAGATCCGTTACTCAAGAGATACAAAGTTGAGCATAGGAATTGTTCTCTTGGGAGTTGGTGTTTGCACCGTCACTGATGTGAGTGTCAATGCCAAAGGCTTCATTGCTGCCTTCATAGCTGTATGGAGCACTTCGCTCCAACAGTATTATGTGCACTTTCTTCAACGGAAATATTCACTCGGTTCTTTCAGTCTGTTGGGACATACTGCTCCGGCCCAGGCTGGATCTCTTCTGTTACTTGGCCCCTTCCTTGACTATTGGCTGACAAACAAGAGGGTTGATGCCTATGACTATAACTTTGGATCTCTGATGTTTATAATTCTCTCATGCACAATCGCAGTAGGCACCAATCTCAGCCAGTTCATCTGCATTGGAAGATTTACCGCTGTGTCCTTCCAAGTACTGGGCCATATGAAGACAATTCTTGTTTTGATCATGGGGTTCTTTTTCTTTGGGAAGGAGGGTCTGAATCTGCATGTTGTTTTGGGAATGATCATAGCTGTGGTTGGGATGATTTGGTATGGAAATGCCTCGTCTAAGCCCGGTGGAAAGGAGCGTTGGAGCCACTCTCTCCCTACGAGCAGGCAACAAAAACACGGTGGTTTTCCTGAATCTACTGAACATGATGGAAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0016020 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

335

Amino Acids

36.67

Weight (kDa)

9.44

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 296	1.8e-13	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34020 AT1G34020 AT1G34020 AT4G09810 AT4G09810 AT4G09810
malus_domestica	MD05G1033300.v1.1 MD10G1034100.v1.1
prunus_persica	Prupe.8G040500_v2.0.a1 Prupe.8G040500_v2.0.a1 Prupe.8G040500_v2.0.a1
pyrus_communis	pycom05g02410 pycom10g02260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	83, 683
AccB1I	GGYRCC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	769
AciI	CCGC	1 cut(s)	750
AclWI	GGATC	4 cut(s)	325, 364, 598, 676
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	3 cut(s)	58, 203, 530
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	907, 939
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	7 cut(s)	20, 44, 98, 229, 322, 485, 866
AluI	AGCT	7 cut(s)	20, 44, 98, 229, 322, 485, 866
Alw21I	GWGCWC	2 cut(s)	497, 522
Alw26I	GTCTC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	4 cut(s)	325, 364, 598, 676
AoxI	GGCC	3 cut(s)	579, 607, 772
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	44, 473
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	3 cut(s)	580, 608, 772
AsuC2I	CCSGG	1 cut(s)	909
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	2 cut(s)	497, 522
BbvI	GCAGC	2 cut(s)	31, 460
BccI	CCATC	2 cut(s)	97, 986
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	798, 858
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	45, 474
BlsI	GCNGC	2 cut(s)	46, 475
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	2 cut(s)	584, 909
BmgT120I	GGNCC	3 cut(s)	580, 608, 772
BmiI	GGNNCC	4 cut(s)	6, 610, 712, 929
BmrFI	CCNGG	2 cut(s)	584, 909
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	220, 637
BmuI	ACTGGG	1 cut(s)	779
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	909
BsaJI	CCNNGG	1 cut(s)	582
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	4 cut(s)	145, 354, 724, 774
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	57, 882
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	216, 309, 314, 733
BseNI	ACTGG	4 cut(s)	145, 354, 724, 774
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	31, 460
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	581, 609, 774
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	2 cut(s)	497, 522
BsiSI	CCGG	2 cut(s)	578, 909
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	581, 609, 774
Bsp1286I	GDGCHC	2 cut(s)	497, 522
Bsp143I	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
BspACI	CCGC	1 cut(s)	750
BspANI	GGCC	3 cut(s)	581, 609, 774
BspCNI	CTCAG	4 cut(s)	217, 308, 315, 732
BspLI	GGNNCC	4 cut(s)	6, 610, 712, 929
BspPI	GGATC	4 cut(s)	325, 364, 598, 676
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	4 cut(s)	145, 354, 724, 774
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	436, 510, 965
Bst6I	CTCTTC	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	950
BstDEI	CTNAG	6 cut(s)	182, 225, 295, 323, 719, 903
BstF5I	GGATG	2 cut(s)	57, 882
BstKTI	GATC	6 cut(s)	333, 372, 593, 671, 801, 861
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 482
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	2 cut(s)	582, 907
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	31, 460
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	3 cut(s)	369, 590, 668
BstYI	RGATCY	3 cut(s)	369, 590, 668
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	581, 609, 774
BtsCI	GGATG	2 cut(s)	57, 882
BtsIMutI	CAGTG	2 cut(s)	303, 438
Cac8I	GCNNGC	1 cut(s)	950
Cfr13I	GGNCC	3 cut(s)	580, 608, 772
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	767
CviAII	CATG	6 cut(s)	48, 342, 693, 802, 842, 989
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	6 cut(s)	182, 225, 295, 323, 719, 903
DpnI	GATC	6 cut(s)	332, 371, 592, 670, 800, 860
DpnII	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	582
FaeI	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	6 cut(s)	47, 341, 692, 801, 841, 988
FauNDI	CATATG	2 cut(s)	112, 777
FbaI	TGATCA	2 cut(s)	798, 858
Fnu4HI	GCNGC	2 cut(s)	45, 474
FokI	GGATG	2 cut(s)	64, 889
Fsp4HI	GCNGC	2 cut(s)	45, 474
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	45, 474
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	581, 609, 774
HapII	CCGG	2 cut(s)	578, 909
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
HinfI	GANTC	3 cut(s)	280, 835, 977
HpaII	CCGG	2 cut(s)	578, 909
Hpy166II	GTNNAC	2 cut(s)	347, 520
Hpy188I	TCNGA	5 cut(s)	102, 226, 312, 675, 834
Hpy188III	TCNNGA	3 cut(s)	362, 381, 974
Hpy8I	GTNNAC	2 cut(s)	347, 520
HpyAV	CCTTC	5 cut(s)	22, 487, 622, 769, 817
HpyCH4III	ACNGT	3 cut(s)	436, 510, 965
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	7 cut(s)	47, 148, 432, 520, 696, 735, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 482
HpyF3I	CTNAG	6 cut(s)	182, 225, 295, 323, 719, 903
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
Ksp22I	TGATCA	2 cut(s)	798, 858
Kzo9I	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
LmnI	GCTCC	6 cut(s)	10, 492, 507, 580, 919, 927
Lsp1109I	GCAGC	2 cut(s)	31, 460
LweI	GCATC	2 cut(s)	220, 637
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	4 cut(s)	64, 374, 436, 600
MalI	GATC	6 cut(s)	332, 371, 592, 670, 800, 860
MboI	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
MboII	GAAGA	4 cut(s)	518, 587, 753, 793
MflI	RGATCY	3 cut(s)	369, 590, 668
MhlI	GDGCHC	2 cut(s)	497, 522
MluCI	AATT	5 cut(s)	84, 236, 405, 684, 786
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	3 cut(s)	247, 529, 905
MnlI	CCTC	4 cut(s)	217, 633, 820, 907
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	137, 1003
MslI	CAYNNNNRTG	2 cut(s)	443, 866
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	578, 909
MspR9I	CCNGG	2 cut(s)	584, 909
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	104, 482
NciI	CCSGG	1 cut(s)	909
NdeI	CATATG	2 cut(s)	112, 777
NdeII	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
NlaIII	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
NlaIV	GGNNCC	4 cut(s)	6, 610, 712, 929
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	845
OliI	CACNNNNGTG	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	835, 977
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	46, 475
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PsiI	TTATAA	2 cut(s)	83, 683
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	4 cut(s)	6, 610, 712, 929
PspPI	GGNCC	3 cut(s)	580, 608, 772
PsuI	RGATCY	3 cut(s)	369, 590, 668
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	2 cut(s)	443, 866
SaqAI	TTAA	2 cut(s)	137, 1003
SatI	GCNGC	2 cut(s)	45, 474
Sau3AI	GATC	6 cut(s)	330, 369, 590, 668, 798, 858
Sau96I	GGNCC	3 cut(s)	580, 608, 772
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	584, 909
SduI	GDGCHC	2 cut(s)	497, 522
SfaNI	GCATC	2 cut(s)	220, 637
SmiMI	CAYNNNNRTG	2 cut(s)	443, 866
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	84, 236, 405, 684, 786
SsiI	CCGC	1 cut(s)	750
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	582, 907
TaaI	ACNGT	3 cut(s)	436, 510, 965
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	363
TasI	AATT	5 cut(s)	84, 236, 405, 684, 786
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	2 cut(s)	835, 977
Tru1I	TTAA	2 cut(s)	137, 1003
Tru9I	TTAA	2 cut(s)	137, 1003
TscAI	CASTG	2 cut(s)	303, 445
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	44, 473
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	287, 457, 469, 718, 794
TspGWI	ACGGA	2 cut(s)	362, 547
TspRI	CASTG	2 cut(s)	303, 445
Van91I	CCANNNNNTGG	1 cut(s)	769
VneI	GTGCAC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.