AT4G09810

purine nucleotide-sugar transmembrane transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017076
Physical Location & Seq
Reverse (-)
6175176 .. 6177351
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09810.1

Sequence Viewer

Length: 1008 bp
ATGGCTCCAGTGAAAAAATCAGATAAGAAAGCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGCTACAACGTTAACCGGTTTACATTTCGCCACTACGACGTTGATGACGCTTGTTTTAAGATGTTTAGGATATATACAACCTTCTCATCTTCCATTTACAGAGCTTCTTAAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGATTGCAAAGCTTAGCATGATTCCTGTATCATGCTTGTTGGAAGTAGTATTTGATAAGATTCGTTACTCAAGAGATACAAAACTTAGCATTGGACTTGTTCTTGTTGGTGTTGGTGTTTGTACTGTTACTGATGTTAGTGTTAACACCAAAGGTTTTGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCTTTGCAACAATACTATGTACATTATCTACAGCGAAAGTACTCGCTTAGCTCATTCAACCTACTGGGTCATACTGCTCCAGCTCAGGCTGCAACGTTATTGATAGTCGGTCCATTTCTCGACTATTGGTTGACAGACAAACGGGTAGACATGTATGATTACAACTCTGTCTCTGTGATGTTTATAACCCTCTCGTGCACAATAGCAATCGGGACAAACCTGAGCCAGTTCATCTGCATCGGGAGATTCACAGCAGTGTCATTCCAAGTCCTGGGCCATATGAAGACGATCTTGGTGCTTGTAATGGGCTTCTTCTTCTTTGACAGAGATGGTCTAAACCTGCATGTGATTCTTGGCATGATCATTGCAGTACTCGGGATGATCTGGTACGGTAATGCCTCGTCCAAGCCAGGCGGCAAGGAGAAGAAGAATTATTCTCTTCCAACGACCCGACAACAGAAACTTGGGGCTACTTCAGATTCTGATGAACATCGAGATAAAGCGTAG

Protein Analysis

335

Amino Acids

37.03

Weight (kDa)

9.33

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 297 1.2e-13 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 849
AccB7I CCANNNNNTGG 1 cut(s) 772
AccI GTMKAC 1 cut(s) 648
AciI CCGC 1 cut(s) 915
AclI AACGTT 2 cut(s) 137, 596
AcuI CTGAAG 1 cut(s) 960
AfaI GTAC 6 cut(s) 436, 499, 522, 542, 873, 890
AfiI CCNNNNNNNGG 1 cut(s) 772
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 651
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 2 cut(s) 61, 559
AjnI CCWGG 2 cut(s) 771, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 6 cut(s) 101, 126, 232, 325, 552, 584
AluI AGCT 6 cut(s) 101, 126, 232, 325, 552, 584
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 1 cut(s) 676
Alw44I GTGCAC 1 cut(s) 697
AlwNI CAGNNNCTG 1 cut(s) 983
Ama87I CYCGRG 1 cut(s) 875
AoxI GGCC 1 cut(s) 775
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 4 cut(s) 44, 47, 476, 590
AsiGI ACCGGT 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 611, 775
AvaI CYCGRG 1 cut(s) 875
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 701
BauI CACGAG 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 4 cut(s) 31, 34, 463, 577
BccI CCATC 1 cut(s) 824
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 2 cut(s) 773, 912
BclI TGATCA 1 cut(s) 861
BcoDI GTCTC 1 cut(s) 676
BfmI CTRYAG 1 cut(s) 530
BfrI CTTAAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 849
BisI GCNGC 5 cut(s) 45, 48, 477, 591, 916
BlpI GCTNAGC 2 cut(s) 326, 548
BlsI GCNGC 5 cut(s) 46, 49, 478, 592, 917
BmcAI AGTACT 3 cut(s) 499, 542, 873
Bme1390I CCNGG 2 cut(s) 773, 912
Bme18I GGWCC 1 cut(s) 611
BmeT110I CYCGRG 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 611, 775
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 773, 912
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 31, 747
BmuI ACTGGG 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 2 cut(s) 585, 722
Bpu1102I GCTNAGC 2 cut(s) 326, 548
BpuEI CTTGAG 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 990
BsaJI CCNNGG 1 cut(s) 772
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 772
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 8, 570, 727
Bse3DI GCAATG 1 cut(s) 864
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 773, 912
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 2 cut(s) 60, 885
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 1 cut(s) 772
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 2 cut(s) 599, 713
BseNI ACTGG 3 cut(s) 8, 570, 727
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 4 cut(s) 31, 34, 463, 577
BshFI GGCC 1 cut(s) 777
BshTI ACCGGT 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 772
BsmAI GTCTC 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 727
BsnI GGCC 1 cut(s) 777
BsoBI CYCGRG 1 cut(s) 875
Bsp1286I GDGCHC 1 cut(s) 701
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 3 cut(s) 789, 861, 882
Bsp1720I GCTNAGC 2 cut(s) 326, 548
BspACI CCGC 1 cut(s) 915
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 2 cut(s) 598, 714
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 849
BspTI CTTAAG 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 3 cut(s) 8, 570, 727
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 3 cut(s) 789, 861, 882
BssSI CACGAG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 2 cut(s) 773, 912
Bst4CI ACNGT 2 cut(s) 439, 893
Bst6I CTCTTC 1 cut(s) 945
BstAFI CTTAAG 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 520
BstDEI CTNAG 5 cut(s) 326, 398, 548, 585, 722
BstF5I GGATG 2 cut(s) 60, 885
BstKTI GATC 3 cut(s) 792, 864, 885
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 3 cut(s) 789, 861, 882
BstMWI GCNNNNNNNGC 3 cut(s) 107, 485, 590
BstNI CCWGG 2 cut(s) 773, 912
BstNSI RCATGY 2 cut(s) 655, 848
BstSCI CCNGG 2 cut(s) 771, 910
BstSFI CTRYAG 1 cut(s) 530
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 31, 34, 463, 577
BstV2I GAAGAC 1 cut(s) 791
BsuRI GGCC 1 cut(s) 777
BtsCI GGATG 2 cut(s) 60, 885
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 15, 762
BveI ACCTGC 1 cut(s) 849
CaiI CAGNNNCTG 1 cut(s) 983
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 611, 775
CseI GACGC 1 cut(s) 184
Csp6I GTAC 6 cut(s) 435, 498, 521, 541, 872, 889
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 5 cut(s) 331, 345, 652, 845, 859
CviQI GTAC 6 cut(s) 435, 498, 521, 541, 872, 889
DdeI CTNAG 5 cut(s) 326, 398, 548, 585, 722
DpnI GATC 3 cut(s) 791, 863, 884
DpnII GATC 3 cut(s) 789, 861, 882
Eam1104I CTCTTC 1 cut(s) 945
EarI CTCTTC 1 cut(s) 945
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 960
Eco88I CYCGRG 1 cut(s) 875
EcoRII CCWGG 2 cut(s) 771, 910
FaeI CATG 5 cut(s) 334, 348, 655, 848, 862
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 1 cut(s) 727
FatI CATG 5 cut(s) 330, 344, 651, 844, 858
FauNDI CATATG 1 cut(s) 780
FbaI TGATCA 1 cut(s) 861
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 5 cut(s) 45, 48, 477, 591, 916
FokI GGATG 2 cut(s) 67, 892
Fsp4HI GCNGC 5 cut(s) 45, 48, 477, 591, 916
GluI GCNGC 5 cut(s) 45, 48, 477, 591, 916
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 777
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 184
Hin1II CATG 5 cut(s) 334, 348, 655, 848, 862
HincII GTYRAC 3 cut(s) 141, 457, 633
HindII GTYRAC 3 cut(s) 141, 457, 633
HindIII AAGCTT 2 cut(s) 99, 323
HinfI GANTC 5 cut(s) 334, 373, 747, 850, 980
HpaI GTTAAC 2 cut(s) 141, 457
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 6 cut(s) 141, 149, 457, 633, 649, 699
Hpy188I TCNGA 4 cut(s) 22, 315, 979, 985
Hpy188III TCNNGA 6 cut(s) 384, 620, 712, 742, 877, 995
Hpy8I GTNNAC 6 cut(s) 141, 149, 457, 633, 649, 699
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 439, 893
HpyCH4IV ACGT 3 cut(s) 137, 167, 596
HpyCH4V TGCA 7 cut(s) 320, 508, 593, 699, 738, 844, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 485, 590
HpyF3I CTNAG 5 cut(s) 326, 398, 548, 585, 722
HpySE526I ACGT 3 cut(s) 137, 167, 596
Hsp92II CATG 5 cut(s) 334, 348, 655, 848, 862
Ksp22I TGATCA 1 cut(s) 861
KspAI GTTAAC 2 cut(s) 141, 457
Kzo9I GATC 3 cut(s) 789, 861, 882
LmnI GCTCC 2 cut(s) 10, 583
Lsp1109I GCAGC 4 cut(s) 31, 34, 463, 577
LweI GCATC 2 cut(s) 31, 747
MaeII ACGT 3 cut(s) 137, 167, 596
MaeIII GTNAC 3 cut(s) 67, 377, 439
MalI GATC 3 cut(s) 791, 863, 884
MboI GATC 3 cut(s) 789, 861, 882
MboII GAAGA 7 cut(s) 209, 796, 805, 808, 932, 937, 940
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 2 cut(s) 256, 931
MmeI TCCRAC 3 cut(s) 250, 333, 968
MnlI CCTC 2 cut(s) 701, 910
MseI TTAA 6 cut(s) 93, 104, 140, 185, 237, 456
MslI CAYNNNNRTG 1 cut(s) 755
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 773, 912
MvaI CCWGG 2 cut(s) 773, 912
MwoI GCNNNNNNNGC 3 cut(s) 107, 485, 590
NdeI CATATG 1 cut(s) 780
NdeII GATC 3 cut(s) 789, 861, 882
NlaIII CATG 5 cut(s) 334, 348, 655, 848, 862
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 655, 848
OliI CACNNNNGTG 1 cut(s) 755
PciI ACATGT 1 cut(s) 651
PfeI GAWTC 5 cut(s) 334, 373, 747, 850, 980
PflMI CCANNNNNTGG 1 cut(s) 772
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 5 cut(s) 46, 49, 478, 592, 917
PscI ACATGT 1 cut(s) 651
PsiI TTATAA 1 cut(s) 686
Psp1406I AACGTT 2 cut(s) 137, 596
Psp6I CCWGG 2 cut(s) 771, 910
PspGI CCWGG 2 cut(s) 771, 910
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 611, 775
PstNI CAGNNNCTG 1 cut(s) 983
RsaI GTAC 6 cut(s) 436, 499, 522, 542, 873, 890
RsaNI GTAC 6 cut(s) 435, 498, 521, 541, 872, 889
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 6 cut(s) 93, 104, 140, 185, 237, 456
SatI GCNGC 5 cut(s) 45, 48, 477, 591, 916
Sau3AI GATC 3 cut(s) 789, 861, 882
Sau96I GGNCC 2 cut(s) 611, 775
ScaI AGTACT 3 cut(s) 499, 542, 873
ScrFI CCNGG 2 cut(s) 773, 912
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 31, 747
SfcI CTRYAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 236, 382
SmoI CTYRAG 2 cut(s) 236, 382
Sse9I AATT 2 cut(s) 256, 931
SsiI CCGC 1 cut(s) 915
StyD4I CCNGG 2 cut(s) 771, 910
TaaI ACNGT 2 cut(s) 439, 893
TaiI ACGT 3 cut(s) 140, 170, 599
TaqI TCGA 3 cut(s) 263, 621, 994
TaqII GACCGA 1 cut(s) 599
TasI AATT 2 cut(s) 256, 931
TatI WGTACW 5 cut(s) 434, 497, 520, 540, 871
TauI GCSGC 1 cut(s) 918
TfiI GAWTC 5 cut(s) 334, 373, 747, 850, 980
Tru1I TTAA 6 cut(s) 93, 104, 140, 185, 237, 456
Tru9I TTAA 6 cut(s) 93, 104, 140, 185, 237, 456
TscAI CASTG 2 cut(s) 15, 762
TseI GCWGC 4 cut(s) 44, 47, 476, 590
TspDTI ATGAA 4 cut(s) 290, 721, 797, 1002
TspRI CASTG 2 cut(s) 15, 762
Van91I CCANNNNNTGG 1 cut(s) 772
Vha464I CTTAAG 1 cut(s) 236
VneI GTGCAC 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 611
XceI RCATGY 2 cut(s) 655, 848
XmiI GTMKAC 1 cut(s) 648
ZrmI AGTACT 3 cut(s) 499, 542, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.