Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0017076

Physical Location & Seq

Genomic Coordinates Forward (+)

4398494 .. 4402128

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1034100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTCCCACTAGCAAAGCTGATAAGAAGGCGGCAGATGCAGCCGCATGGATGTTCAATGTCGTAACTTCTGTTGGGATCATAATTGTCAATAAAGCTCTAATGGCTACATACGGCTTCAGTTTTGCTACAACATTAACCGGATTGCATTTTGCTACGACAACTTTGATGACGGTTGTTCTAAGGTGGCTGGGATACATTCAACCCTCGCATCTACCTGTCTCTGAGCTTCTAAAATTTATGGTCTTTGCTAACTTCTCTATTGTTGGAATGAACGTGAGTCTAATGTGGAACTCAGTGGGATTTTATCAGATAGCAAAGCTGAGTATGATCCCCGTGTCATGTTTACTGGAAGTTGTTCTTGATAAGATTCGTTACTCAAGAGACACAAAGTTGAGCATAGGAATTGTTCTCTTGGGAGTTGGTGTTTGCACTGTCACTGATGTGAGTGTCAATGCCAAGGGCTTCATTGCTGCCTTTATAGCTGTATGGAGCACTGCGCTACAACAATATTACGTGCACTTTCTTCAACGGAAATATTCACTTGGTTCTTTCAGTCTGTTGGGACATACTGCTCCGGCCCAGGCTGGATCTCTTCTGTTACTCGGTCCCTTCCTTGACTATTGGTTGACAAACAAGAGAGTTGATGCCTATGACTATAACTATGGATCTCTGATGTTTATAATTCTCTCATGCACAATCGCGGTAGGCACCAATCTCAGCCAGTTCATCTGTATTGGAAGATTTACCGCTGTCTCCTTCCAAGTACTGGGGCATATGAAAACAATTCTTGTTTTGATCATGGGGTTCTTTTTCTTTGGAAAGGAGGGTCTGAATCTGCATGTTGTTTTGGGAATGATCATAGCTGTGGTTGGGATGATTTGGTATGGAAATGCCTCGTCTAAGCCCGGTGGAAAGGAGCGTCGGAGCCACTCTCTTCCTACAAGCAGGCAACAAAAACACGGTGGTTTTCCTGAATCTACTGAACATGACGGAAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0016020 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

335

Amino Acids

36.62

Weight (kDa)

9.5

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	22 - 296	1.6e-13	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34020 AT1G34020 AT1G34020 AT4G09810 AT4G09810 AT4G09810
malus_domestica	MD05G1033300.v1.1 MD10G1034100.v1.1
prunus_persica	Prupe.8G040500_v2.0.a1 Prupe.8G040500_v2.0.a1 Prupe.8G040500_v2.0.a1
pyrus_communis	pycom05g02410 pycom10g02260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccII	CGCG	1 cut(s)	704
AciI	CCGC	4 cut(s)	32, 45, 704, 750
AclWI	GGATC	4 cut(s)	86, 325, 598, 676
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	3 cut(s)	58, 203, 530
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	6 cut(s)	20, 98, 229, 322, 485, 866
AluI	AGCT	6 cut(s)	20, 98, 229, 322, 485, 866
Alw21I	GWGCWC	2 cut(s)	497, 522
Alw26I	GTCTC	3 cut(s)	226, 378, 760
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	4 cut(s)	86, 325, 598, 676
AoxI	GGCC	1 cut(s)	579
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	41, 473
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	580, 608
AsuC2I	CCSGG	1 cut(s)	909
AvaII	GGWCC	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	710
Bbv12I	GWGCWC	2 cut(s)	497, 522
BbvI	GCAGC	2 cut(s)	53, 460
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	798, 858
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	3 cut(s)	226, 378, 760
BfaI	CTAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	4 cut(s)	33, 42, 45, 474
BlsI	GCNGC	4 cut(s)	34, 43, 46, 475
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	2 cut(s)	584, 909
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	580, 608
BmiI	GGNNCC	4 cut(s)	6, 610, 712, 929
BmrFI	CCNGG	2 cut(s)	584, 909
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	3 cut(s)	28, 220, 637
BmuI	ACTGGG	1 cut(s)	779
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	909
BsaAI	YACGTR	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	459, 582
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	3 cut(s)	354, 724, 774
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	459, 582
BseGI	GGATG	2 cut(s)	57, 882
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	216, 309, 314, 733
BseNI	ACTGG	3 cut(s)	354, 724, 774
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	53, 460
BseYI	CCCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	704
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	2 cut(s)	497, 522
BsiSI	CCGG	3 cut(s)	141, 578, 909
BslFI	GGGAC	2 cut(s)	579, 594
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	3 cut(s)	226, 378, 760
BsmFI	GGGAC	2 cut(s)	579, 594
BsnI	GGCC	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	497, 522
Bsp143I	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
BspACI	CCGC	4 cut(s)	32, 45, 704, 750
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	4 cut(s)	217, 308, 315, 732
BspFNI	CGCG	1 cut(s)	704
BspLI	GGNNCC	4 cut(s)	6, 610, 712, 929
BspPI	GGATC	4 cut(s)	86, 325, 598, 676
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	354, 724, 774
BssECI	CCNNGG	2 cut(s)	459, 582
BssMI	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	175, 436, 965
Bst6I	CTCTTC	2 cut(s)	600, 942
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	950
BstDEI	CTNAG	6 cut(s)	182, 225, 295, 323, 719, 903
BstF5I	GGATG	2 cut(s)	57, 882
BstFNI	CGCG	1 cut(s)	704
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	6 cut(s)	81, 333, 593, 671, 801, 861
BstMAI	GTCTC	3 cut(s)	226, 378, 760
BstMBI	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 41, 104, 482
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	2 cut(s)	582, 907
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	704
BstV1I	GCAGC	2 cut(s)	53, 460
BstX2I	RGATCY	2 cut(s)	590, 668
BstYI	RGATCY	2 cut(s)	590, 668
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	57, 882
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	4 cut(s)	303, 432, 438, 495
Cac8I	GCNNGC	1 cut(s)	950
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	580, 608
CseI	GACGC	1 cut(s)	911
Csp6I	GTAC	1 cut(s)	767
CviAII	CATG	6 cut(s)	48, 342, 693, 802, 842, 989
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	6 cut(s)	182, 225, 295, 323, 719, 903
DpnI	GATC	6 cut(s)	80, 332, 592, 670, 800, 860
DpnII	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
Eam1104I	CTCTTC	2 cut(s)	600, 942
EarI	CTCTTC	2 cut(s)	600, 942
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	579, 594
FatI	CATG	6 cut(s)	47, 341, 692, 801, 841, 988
FauNDI	CATATG	1 cut(s)	777
FbaI	TGATCA	2 cut(s)	798, 858
Fnu4HI	GCNGC	4 cut(s)	33, 42, 45, 474
FokI	GGATG	2 cut(s)	64, 889
Fsp4HI	GCNGC	4 cut(s)	33, 42, 45, 474
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	4 cut(s)	33, 42, 45, 474
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	3 cut(s)	141, 578, 909
HgaI	GACGC	1 cut(s)	911
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	4 cut(s)	280, 370, 835, 977
HpaII	CCGG	3 cut(s)	141, 578, 909
Hpy166II	GTNNAC	3 cut(s)	347, 520, 630
Hpy188I	TCNGA	5 cut(s)	226, 312, 675, 834, 927
Hpy188III	TCNNGA	3 cut(s)	362, 381, 974
Hpy8I	GTNNAC	3 cut(s)	347, 520, 630
Hpy99I	CGWCG	1 cut(s)	927
HpyAV	CCTTC	3 cut(s)	22, 622, 769
HpyCH4III	ACNGT	3 cut(s)	175, 436, 965
HpyCH4IV	ACGT	2 cut(s)	276, 516
HpyCH4V	TGCA	6 cut(s)	41, 148, 432, 520, 696, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 41, 104, 482
HpyF3I	CTNAG	6 cut(s)	182, 225, 295, 323, 719, 903
HpySE526I	ACGT	2 cut(s)	276, 516
Hsp92II	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	2 cut(s)	798, 858
Kzo9I	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
LmnI	GCTCC	5 cut(s)	10, 492, 580, 919, 927
Lsp1109I	GCAGC	2 cut(s)	53, 460
LweI	GCATC	3 cut(s)	28, 220, 637
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	2 cut(s)	276, 516
MaeIII	GTNAC	4 cut(s)	64, 374, 436, 600
MalI	GATC	6 cut(s)	80, 332, 592, 670, 800, 860
MboI	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
MboII	GAAGA	4 cut(s)	518, 587, 753, 929
MflI	RGATCY	2 cut(s)	590, 668
MhlI	GDGCHC	2 cut(s)	497, 522
MluCI	AATT	5 cut(s)	84, 236, 405, 684, 786
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	2 cut(s)	247, 905
MnlI	CCTC	3 cut(s)	217, 820, 907
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	137, 1003
MslI	CAYNNNNRTG	2 cut(s)	443, 866
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	3 cut(s)	141, 578, 909
MspR9I	CCNGG	2 cut(s)	584, 909
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	4 cut(s)	38, 41, 104, 482
NciI	CCSGG	1 cut(s)	909
NdeI	CATATG	1 cut(s)	777
NdeII	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
NlaIII	CATG	6 cut(s)	51, 345, 696, 805, 845, 992
NlaIV	GGNNCC	4 cut(s)	6, 610, 712, 929
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	845
OliI	CACNNNNGTG	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	370, 835, 977
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	4 cut(s)	34, 43, 46, 475
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	4 cut(s)	6, 610, 712, 929
PspPI	GGNCC	2 cut(s)	580, 608
PsuI	RGATCY	2 cut(s)	590, 668
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	2 cut(s)	443, 866
SaqAI	TTAA	2 cut(s)	137, 1003
SatI	GCNGC	4 cut(s)	33, 42, 45, 474
Sau3AI	GATC	6 cut(s)	78, 330, 590, 668, 798, 858
Sau96I	GGNCC	2 cut(s)	580, 608
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	584, 909
SduI	GDGCHC	2 cut(s)	497, 522
SfaNI	GCATC	3 cut(s)	28, 220, 637
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	2 cut(s)	443, 866
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	84, 236, 405, 684, 786
SsiI	CCGC	4 cut(s)	32, 45, 704, 750
SspI	AATATT	2 cut(s)	512, 539
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	582, 907
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	175, 436, 965
TaiI	ACGT	2 cut(s)	279, 519
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	5 cut(s)	84, 236, 405, 684, 786
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	2 cut(s)	35, 47
TfiI	GAWTC	3 cut(s)	370, 835, 977
Tru1I	TTAA	2 cut(s)	137, 1003
Tru9I	TTAA	2 cut(s)	137, 1003
TscAI	CASTG	4 cut(s)	303, 439, 445, 502
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	41, 473
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	287, 457, 718, 794
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	4 cut(s)	303, 439, 445, 502
Van91I	CCANNNNNTGG	1 cut(s)	769
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.