AT1G34270

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014147
Physical Location & Seq
Reverse (-)
12492321 .. 12494584
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34270.1

Sequence Viewer

Length: 1434 bp
ATGGTTCCTAAGATCGCATCAATGGCGTCTACTAGACCTCTCTGTTCAATTCCTTCTATCTTCCTCTCTTTCTCTCTCCTCTTCGTCGTCTCTCTTCTCTTCTTCTTCTCCAATTCCTTAATCTCCAATCCAAATCCGAGCATTTCACACAACACTCTCCAAAACGGTATCAATGTCTATGTAGCTGAGCTTCCAAGATCCCTAAACTATGGTCTTATCGACAAATACTGGTCCTCTTCTACTCCAGATTCACGTATACCCAGTGACCCAGATCACCCGACCCGTAAAACCCATTCACCCGATAAATACCCACCGTACCCAGAGAACCCGTTGATCAAGCAATACAGTGCTGAGTACTGGATCATGGGAGACCTAGAAACCTCACCAGAGAAACGAATTGGATCTTTTGCTAAAAGGGTTTTTAGTGAATCTGACGCTGATGTAGTCTTCGTGCCTTTCTTTGCGACGTTAAGTGCAGAGATGGAGCTTGGAAATGGTAAAGGTTCGTTTAGAAAGAAGTCTGGTAACGAAGATTATCAAAGACAGAGACAAGTGCTTGATTTTGTCAAGAACACTAAAGCTTGGAAACGATCTAATGGTCGTGATCACGTTTTTGTTCTAACGGACCCTGTTGCAATGTGGCATGTTCGTGAGGAGATTGCTTTATCTATTCTTCTTGTGGTGGATTTTGGAGGATGGTTTAGGCAAGATTCTAAGTCGTCTAATGGGACTAGCTTGCCTGAGAGGATTCAGCATACTCAAGTCTCTGTCATTAAGGATGTGATTGTTCCATATACGCATTTGCTTCCTAGACTGGATTTGTCTCAGAACCAGAGACGTCATAGCCTTCTTTATTTTAAAGGCGCTAAGCACAGACATCGGGGAGGGTTAATCAGAGAAAAACTATGGGACTTGCTGGTCAATGAGCCTGGCGTTGTCATGGAAGAAGGTTTTCCTAATGCAACAGGAAGGGAACAGTCGATAAGAGGAATGAGAAACTCAGAGTTCTGCTTACATCCAGCTGGTGACACTCCCACTTCATGCCGTCTCTTTGATGCCATTCAAAGTCTATGCATCCCTGTGATTGTCAGCGACACCATAGAGCTCCCGTTTGAGGGAATAATCGATTACTCAGAATTCTCGGTTTTTGCCTCTGTAAGTGATGCATTAACACCTAAATGGTTGGCTAATCATCTCGGAAGGTTCTCTGAAAGAGAGAAGGAAACATTGAGAAGTAGAATAGCAAAGGTTCAGTCAGTTTTTGTGTATGATAATGGTCATGCCGATGGGATTGGACCTATTGAACCCAATGGTGCGGTGAATCACATATGGAAGAAGGTTCAGCAGAAGGTGCCAATGGTGAAGGAGGCAGTGATTAGGGAGAGGAGAAAACCAGCAGGTGCTTCCGTTCCACTTCGATGTCAATGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

477

Amino Acids

53.88

Weight (kDa)

8.96

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 54 - 398 1.1e-67 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34270
fragaria_vesca FvH4_2g12430
malus_domestica MD05G1038500.v1.1 MD10G1044300.v1.1
prunus_persica Prupe.8G050800_v2.0.a1
pyrus_communis pycom05g03140 pycom10g03090
rosa_chinensis RchiOBHm_Chr6g0272591
rosa_laevigata RLG00000013663
rosa_multiflora Rmu_sc0003080.1_g000005
rosa_roxburghii Rroxscaffold_7G00196090
rosa_rugosa Rorug06G0070100
rosa_samantha Rh6AG186500 Rh6BG189800 Rh6CG187600 Rh6DG179500
rosa_wichuraiana Rw6G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1388
AasI GACNNNNNNGTC 1 cut(s) 917
AatII GACGTC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 1388
AccB1I GGYRCC 1 cut(s) 1351
AccI GTMKAC 2 cut(s) 29, 256
AciI CCGC 1 cut(s) 1316
AclWI GGATC 3 cut(s) 192, 368, 409
AcsI RAATTY 1 cut(s) 1136
AcyI GRCGYC 2 cut(s) 26, 838
AfaI GTAC 2 cut(s) 317, 356
AfiI CCNNNNNNNGG 2 cut(s) 1114, 1115
AgsI TTSAA 3 cut(s) 48, 1064, 1304
AjnI CCWGG 1 cut(s) 928
AluBI AGCT 7 cut(s) 185, 190, 487, 581, 735, 1022, 1105
AluI AGCT 7 cut(s) 185, 190, 487, 581, 735, 1022, 1105
Alw21I GWGCWC 1 cut(s) 1107
Alw26I GTCTC 7 cut(s) 94, 363, 541, 769, 828, 829, 1052
AlwI GGATC 3 cut(s) 192, 368, 409
ApoI RAATTY 1 cut(s) 1136
ArsI GACNNNNNNTTYG 2 cut(s) 1238, 1270
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 3 cut(s) 231, 625, 1295
AsuHPI GGTGA 6 cut(s) 266, 288, 375, 1037, 1330, 1372
AvaII GGWCC 3 cut(s) 231, 625, 1295
BanI GGYRCC 1 cut(s) 1351
BanII GRGCYC 1 cut(s) 1107
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbsI GAAGAC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 1107
BccI CCATC 3 cut(s) 475, 690, 1280
BceAI ACGGC 1 cut(s) 1029
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciT130I CCWGG 1 cut(s) 930
BclI TGATCA 2 cut(s) 333, 604
BcoDI GTCTC 7 cut(s) 94, 363, 541, 769, 828, 829, 1052
BfaI CTAG 4 cut(s) 33, 374, 732, 810
BfoI RGCGCY 1 cut(s) 867
BfuAI ACCTGC 1 cut(s) 1388
BlpI GCTNAGC 2 cut(s) 186, 867
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 930
Bme18I GGWCC 3 cut(s) 231, 625, 1295
BmgT120I GGNCC 3 cut(s) 231, 625, 1295
BmiI GGNNCC 3 cut(s) 6, 627, 1353
BmrFI CCNGG 1 cut(s) 930
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 4 cut(s) 26, 1045, 1083, 1153
BmuI ACTGGG 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 228
Bpu1102I GCTNAGC 2 cut(s) 186, 867
BpuEI CTTGAG 1 cut(s) 744
Bsa29I ATCGAT 1 cut(s) 1125
BsaAI YACGTR 1 cut(s) 254
BsaHI GRCGYC 2 cut(s) 26, 838
BsaI GGTCTC 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 1114, 1115
Bse1I ACTGG 4 cut(s) 233, 261, 362, 819
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 930
BseCI ATCGAT 1 cut(s) 1125
BseGI GGATG 4 cut(s) 701, 784, 1015, 1074
BseLI CCNNNNNNNGG 2 cut(s) 1114, 1115
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 6 cut(s) 177, 342, 732, 839, 1014, 1146
BseNI ACTGG 4 cut(s) 233, 261, 362, 819
BseRI GAGGAG 3 cut(s) 68, 668, 1399
BsgI GTGCAG 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 1351
BshVI ATCGAT 1 cut(s) 1125
BsiHKAI GWGCWC 1 cut(s) 1107
BslFI GGGAC 2 cut(s) 742, 923
BslI CCNNNNNNNGG 2 cut(s) 1114, 1115
BsmAI GTCTC 7 cut(s) 94, 363, 541, 769, 828, 829, 1052
BsmBI CGTCTC 3 cut(s) 94, 829, 1052
BsmFI GGGAC 2 cut(s) 742, 923
Bso31I GGTCTC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp143I GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
Bsp1720I GCTNAGC 2 cut(s) 186, 867
BspACI CCGC 1 cut(s) 1316
BspCNI CTCAG 6 cut(s) 178, 343, 733, 838, 1013, 1145
BspDI ATCGAT 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 6, 627, 1353
BspMI ACCTGC 1 cut(s) 1388
BspPI GGATC 3 cut(s) 192, 368, 409
BspT107I GGYRCC 1 cut(s) 1351
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 4 cut(s) 233, 261, 362, 819
BssMI GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
BssNAI GTATAC 1 cut(s) 257
BssNI GRCGYC 2 cut(s) 26, 838
Bst1107I GTATAC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 930
Bst4CI ACNGT 4 cut(s) 167, 315, 347, 978
Bst6I CTCTTC 4 cut(s) 86, 99, 104, 241
BstACI GRCGYC 2 cut(s) 26, 838
BstAPI GCANNNNNTGC 1 cut(s) 1351
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 9 cut(s) 9, 186, 351, 714, 741, 825, 867, 1000, 1132
BstF5I GGATG 4 cut(s) 701, 784, 1015, 1074
BstH2I RGCGCY 1 cut(s) 867
BstHHI GCGC 1 cut(s) 866
BstKTI GATC 8 cut(s) 15, 200, 274, 336, 363, 404, 593, 607
BstMAI GTCTC 7 cut(s) 94, 363, 541, 769, 828, 829, 1052
BstMBI GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
BstMWI GCNNNNNNNGC 2 cut(s) 23, 1351
BstNI CCWGG 1 cut(s) 930
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 928
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 2 cut(s) 197, 401
BstYI RGATCY 2 cut(s) 197, 401
BstZ17I GTATAC 1 cut(s) 257
Bsu15I ATCGAT 1 cut(s) 1125
BsuTUI ATCGAT 1 cut(s) 1125
BtsCI GGATG 4 cut(s) 701, 784, 1015, 1074
BtsI GCAGTG 1 cut(s) 1377
BtsIMutI CAGTG 3 cut(s) 268, 352, 1377
BveI ACCTGC 1 cut(s) 1388
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 866
Cfr13I GGNCC 3 cut(s) 231, 625, 1295
ClaI ATCGAT 1 cut(s) 1125
CseI GACGC 2 cut(s) 15, 443
Csp6I GTAC 2 cut(s) 316, 355
CviAII CATG 5 cut(s) 364, 644, 940, 1041, 1280
CviQI GTAC 2 cut(s) 316, 355
DdeI CTNAG 9 cut(s) 9, 186, 351, 714, 741, 825, 867, 1000, 1132
DpnI GATC 8 cut(s) 14, 199, 273, 335, 362, 403, 592, 606
DpnII GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
DraI TTTAAA 1 cut(s) 859
DrdI GACNNNNNNGTC 1 cut(s) 917
DseDI GACNNNNNNGTC 1 cut(s) 917
Eam1104I CTCTTC 4 cut(s) 86, 99, 104, 241
EarI CTCTTC 4 cut(s) 86, 99, 104, 241
Ecl136II GAGCTC 1 cut(s) 1105
Eco24I GRGCYC 1 cut(s) 1107
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 3 cut(s) 231, 625, 1295
Eco53kI GAGCTC 1 cut(s) 1105
EcoICRI GAGCTC 1 cut(s) 1105
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 1 cut(s) 928
EcoT22I ATGCAT 2 cut(s) 1076, 1168
EcoT38I GRGCYC 1 cut(s) 1107
Esp3I CGTCTC 3 cut(s) 94, 829, 1052
FaeI CATG 5 cut(s) 367, 647, 943, 1044, 1283
FaqI GGGAC 2 cut(s) 742, 923
FatI CATG 5 cut(s) 363, 643, 939, 1040, 1279
FauNDI CATATG 1 cut(s) 1328
FbaI TGATCA 2 cut(s) 333, 604
FblI GTMKAC 2 cut(s) 29, 256
FokI GGATG 4 cut(s) 708, 791, 1002, 1061
FriOI GRGCYC 1 cut(s) 1107
FspBI CTAG 4 cut(s) 33, 374, 732, 810
GlaI GCGC 1 cut(s) 865
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 867
HgaI GACGC 2 cut(s) 15, 443
HhaI GCGC 1 cut(s) 866
Hin1I GRCGYC 2 cut(s) 26, 838
Hin1II CATG 5 cut(s) 367, 647, 943, 1044, 1283
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 5 cut(s) 248, 428, 710, 748, 1321
HphI GGTGA 6 cut(s) 266, 288, 375, 1037, 1330, 1372
Hpy166II GTNNAC 2 cut(s) 30, 257
Hpy188I TCNGA 8 cut(s) 138, 433, 828, 896, 1003, 1135, 1199, 1210
Hpy188III TCNNGA 4 cut(s) 245, 568, 602, 650
Hpy8I GTNNAC 2 cut(s) 30, 257
Hpy99I CGWCG 2 cut(s) 89, 469
HpyAV CCTTC 9 cut(s) 63, 857, 941, 963, 1194, 1213, 1330, 1342, 1357
HpyCH4III ACNGT 4 cut(s) 167, 315, 347, 978
HpyCH4IV ACGT 4 cut(s) 253, 467, 609, 838
HpyCH4V TGCA 5 cut(s) 476, 635, 962, 1074, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 1351
HpyF3I CTNAG 9 cut(s) 9, 186, 351, 714, 741, 825, 867, 1000, 1132
HpySE526I ACGT 4 cut(s) 253, 467, 609, 838
Hsp92I GRCGYC 2 cut(s) 26, 838
Hsp92II CATG 5 cut(s) 367, 647, 943, 1044, 1283
HspAI GCGC 1 cut(s) 864
Ksp22I TGATCA 2 cut(s) 333, 604
Kzo9I GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
LmnI GCTCC 2 cut(s) 484, 1110
LweI GCATC 4 cut(s) 26, 1045, 1083, 1153
MaeI CTAG 4 cut(s) 33, 374, 732, 810
MaeII ACGT 4 cut(s) 253, 467, 609, 838
MaeIII GTNAC 3 cut(s) 263, 524, 1025
MalI GATC 8 cut(s) 14, 199, 273, 335, 362, 403, 592, 606
MboI GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
MflI RGATCY 2 cut(s) 197, 401
MhlI GDGCHC 1 cut(s) 1107
MluCI AATT 4 cut(s) 48, 112, 396, 1136
Mph1103I ATGCAT 2 cut(s) 1076, 1168
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 6 cut(s) 119, 470, 774, 858, 890, 1169
MslI CAYNNNNRTG 5 cut(s) 648, 1079, 1177, 1284, 1417
MspA1I CMGCKG 1 cut(s) 1022
MspR9I CCNGG 1 cut(s) 930
MvaI CCWGG 1 cut(s) 930
MwoI GCNNNNNNNGC 2 cut(s) 23, 1351
NdeI CATATG 1 cut(s) 1328
NdeII GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
NlaIII CATG 5 cut(s) 367, 647, 943, 1044, 1283
NlaIV GGNNCC 3 cut(s) 6, 627, 1353
NmuCI GTSAC 2 cut(s) 263, 1025
NsiI ATGCAT 2 cut(s) 1076, 1168
NspI RCATGY 1 cut(s) 647
PaqCI CACCTGC 1 cut(s) 1388
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 5 cut(s) 248, 428, 710, 748, 1321
Ppu21I YACGTR 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 1107
Psp6I CCWGG 1 cut(s) 928
PspGI CCWGG 1 cut(s) 928
PspN4I GGNNCC 3 cut(s) 6, 627, 1353
PspPI GGNCC 3 cut(s) 231, 625, 1295
PsuI RGATCY 2 cut(s) 197, 401
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 2 cut(s) 317, 356
RsaNI GTAC 2 cut(s) 316, 355
RseI CAYNNNNRTG 5 cut(s) 648, 1079, 1177, 1284, 1417
SacI GAGCTC 1 cut(s) 1107
SaqAI TTAA 6 cut(s) 119, 470, 774, 858, 890, 1169
Sau3AI GATC 8 cut(s) 12, 197, 271, 333, 360, 401, 590, 604
Sau96I GGNCC 3 cut(s) 231, 625, 1295
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 930
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 4 cut(s) 26, 1045, 1083, 1153
SinI GGWCC 3 cut(s) 231, 625, 1295
SmiMI CAYNNNNRTG 5 cut(s) 648, 1079, 1177, 1284, 1417
SmlI CTYRAG 1 cut(s) 759
SmoI CTYRAG 1 cut(s) 759
Sse9I AATT 4 cut(s) 48, 112, 396, 1136
SsiI CCGC 1 cut(s) 1316
SspMI CTAG 4 cut(s) 33, 374, 732, 810
SstI GAGCTC 1 cut(s) 1107
StyD4I CCNGG 1 cut(s) 928
TaaI ACNGT 4 cut(s) 167, 315, 347, 978
TaiI ACGT 4 cut(s) 256, 470, 612, 841
TaqI TCGA 4 cut(s) 219, 980, 1125, 1417
TasI AATT 4 cut(s) 48, 112, 396, 1136
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 5 cut(s) 248, 428, 710, 748, 1321
Tru1I TTAA 6 cut(s) 119, 470, 774, 858, 890, 1169
Tru9I TTAA 6 cut(s) 119, 470, 774, 858, 890, 1169
TscAI CASTG 3 cut(s) 268, 352, 1377
TseFI GTSAC 2 cut(s) 263, 1025
Tsp45I GTSAC 2 cut(s) 263, 1025
TspDTI ATGAA 1 cut(s) 1029
TspGWI ACGGA 2 cut(s) 638, 1396
TspRI CASTG 3 cut(s) 268, 352, 1377
VpaK11BI GGWCC 3 cut(s) 231, 625, 1295
XapI RAATTY 1 cut(s) 1136
XceI RCATGY 1 cut(s) 647
XmiI GTMKAC 2 cut(s) 29, 256
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 4 cut(s) 33, 374, 732, 810
ZraI GACGTC 1 cut(s) 839
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 2 cut(s) 1076, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.