pycom05g03140

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014147
Physical Location & Seq
Reverse (-)
3650390 .. 3651983
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03140.3

Sequence Viewer

Length: 855 bp
ATGTGTTTGTGCTTACTGGTTGTGTTAAAACTTGAAGCATTTTTGGCAGACCCAGTGGCAATGTGGCACGTTCGAGCAGAGATTGCCCCGGCGGTTCTTCTAGTTGTGGATTTTGGAGGGTGGTACAGACTCGAATCGAAGTCATCAAATGGCAACTCATCAGATGTGATTCAGCACACACAGGTGTCACTACTCAAAGATGTCATTGTGCCCTACACCCATCTACTTCCTCGATTGCAACTGACAGAAAACAAGAAGCGTCATACTCTACTTTATTTCAAAGGAGCTAAACATAGGCACCGGGGGGGCTTAGTTCGAGAAAAATTGTGGGACTTGTTGGTTAATGAGCCCGATGTTATCATGGAAGAAGGCTTCCCTAACGCCACTGGGAGGGAGCAATCCATAAAAGGGATGAGAACTTCAGAGTTTTGCTTGCATCCAGCTGGGGACACTCCCACTTCATGTCGGCTGTTCGATGCGATTCAAAGTCTCTGTATACCCGTTATTGTCAGTGACAACATAGAACTTCCTTTTGAAGGAATGGTAGATTATTCCGAGTTTTCAGTTTTTGTGGCAGTTGATGATGCATTGAAAACGAACTGGATTGTGAGCCATCTTAGGACCTTTACTAGAGAGCAGAGGACTAGATTTCGTCGGAAAATGGCACAGTTTCAGCCCATGTTTGAGTATGACAATGGTCATCCTGGTGGCATCGGGCCAATTCCTCCCGACGGTGCAGTGAACCACATGTGGAAAAAGGTTCATCAAAAGTTGCCAATGATTAAGGAATCAATCGTTCGTGAAAGGAGAAAACCTCCCGGTGTTTCAGTTCCACGCCGTTGCCACTGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

285

Amino Acids

32.39

Weight (kDa)

8.95

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34270
fragaria_vesca FvH4_2g12430
malus_domestica MD05G1038500.v1.1 MD10G1044300.v1.1
prunus_persica Prupe.8G050800_v2.0.a1
pyrus_communis pycom05g03140 pycom10g03090
rosa_chinensis RchiOBHm_Chr6g0272591
rosa_laevigata RLG00000013663
rosa_multiflora Rmu_sc0003080.1_g000005
rosa_roxburghii Rroxscaffold_7G00196090
rosa_rugosa Rorug06G0070100
rosa_samantha Rh6AG186500 Rh6BG189800 Rh6CG187600 Rh6DG179500
rosa_wichuraiana Rw6G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 496
AciI CCGC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 2 cut(s) 125, 850
AfiI CCNNNNNNNGG 4 cut(s) 390, 408, 536, 731
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 5 cut(s) 35, 280, 485, 536, 592
AjnI CCWGG 1 cut(s) 703
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 2 cut(s) 287, 443
AluI AGCT 2 cut(s) 287, 443
Alw26I GTCTC 1 cut(s) 494
AoxI GGCC 1 cut(s) 716
AspS9I GGNCC 2 cut(s) 621, 716
AsuC2I CCSGG 3 cut(s) 89, 302, 819
AvaII GGWCC 1 cut(s) 621
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 351
BccI CCATC 2 cut(s) 228, 621
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 1 cut(s) 705
BcnI CCSGG 3 cut(s) 89, 302, 819
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 101, 630, 645
Bme1390I CCNGG 4 cut(s) 89, 302, 705, 819
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 2 cut(s) 621, 716
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 4 cut(s) 89, 302, 705, 819
BmrI ACTGGG 2 cut(s) 47, 396
BmsI GCATC 4 cut(s) 445, 466, 574, 720
BmuI ACTGGG 2 cut(s) 47, 396
BoxI GACNNNNGTC 1 cut(s) 696
BplI GAGNNNNNCTC 2 cut(s) 799, 831
BpuMI CCSGG 3 cut(s) 89, 302, 819
BsaAI YACGTR 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 87, 301
Bsc4I CCNNNNNNNGG 4 cut(s) 390, 408, 536, 731
Bse1I ACTGG 4 cut(s) 21, 53, 391, 605
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 87, 301
BseGI GGATG 3 cut(s) 417, 436, 700
BseLI CCNNNNNNNGG 4 cut(s) 390, 408, 536, 731
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 4 cut(s) 21, 53, 391, 605
BseSI GKGCMC 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 756
BshFI GGCC 1 cut(s) 718
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 89, 301, 819
BslFI GGGAC 2 cut(s) 344, 461
BslI CCNNNNNNNGG 4 cut(s) 390, 408, 536, 731
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 344, 461
BsnI GGCC 1 cut(s) 718
Bsp1286I GDGCHC 2 cut(s) 213, 351
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 4 cut(s) 21, 53, 391, 605
BssECI CCNNGG 2 cut(s) 87, 301
BssNAI GTATAC 1 cut(s) 497
Bst1107I GTATAC 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 3 cut(s) 669, 734, 848
BstAPI GCANNNNNTGC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 852
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 310, 617
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 417, 436, 700
BstMAI GTCTC 1 cut(s) 494
BstMWI GCNNNNNNNGC 2 cut(s) 44, 83
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 751
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 4 cut(s) 87, 300, 703, 817
BstSLI GKGCMC 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 497
BsuRI GGCC 1 cut(s) 718
BtsCI GGATG 3 cut(s) 417, 436, 700
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 5 cut(s) 60, 384, 517, 744, 844
Cac8I GCNNGC 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 621, 716
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 124, 849
CviAII CATG 4 cut(s) 361, 462, 679, 748
CviJI RGCY 9 cut(s) 287, 309, 349, 372, 443, 469, 612, 676, 718
CviKI_1 RGCY 9 cut(s) 287, 309, 349, 372, 443, 469, 612, 676, 718
CviQI GTAC 2 cut(s) 124, 849
DdeI CTNAG 2 cut(s) 310, 617
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 621
Eco57I CTGAAG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 4 cut(s) 364, 465, 682, 751
FaqI GGGAC 2 cut(s) 344, 461
FatI CATG 4 cut(s) 360, 461, 678, 747
FblI GTMKAC 1 cut(s) 496
FokI GGATG 3 cut(s) 423, 424, 687
FriOI GRGCYC 1 cut(s) 351
FspBI CTAG 3 cut(s) 101, 630, 645
GsaI CCCAGC 1 cut(s) 447
HaeIII GGCC 1 cut(s) 718
HapII CCGG 3 cut(s) 89, 301, 819
HgaI GACGC 1 cut(s) 248
Hin1II CATG 4 cut(s) 364, 465, 682, 751
HinfI GANTC 5 cut(s) 129, 134, 169, 481, 788
HpaII CCGG 3 cut(s) 89, 301, 819
Hpy166II GTNNAC 2 cut(s) 497, 742
Hpy188I TCNGA 4 cut(s) 163, 424, 556, 657
Hpy188III TCNNGA 3 cut(s) 317, 728, 800
Hpy8I GTNNAC 2 cut(s) 497, 742
Hpy99I CGWCG 2 cut(s) 657, 734
HpyAV CCTTC 2 cut(s) 362, 530
HpyCH4III ACNGT 3 cut(s) 669, 734, 848
HpyCH4IV ACGT 2 cut(s) 69, 851
HpyCH4V TGCA 4 cut(s) 238, 436, 587, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 83
HpyF3I CTNAG 2 cut(s) 310, 617
HpySE526I ACGT 2 cut(s) 69, 851
Hsp92II CATG 4 cut(s) 364, 465, 682, 751
LmnI GCTCC 2 cut(s) 284, 394
LweI GCATC 4 cut(s) 445, 466, 574, 720
MaeI CTAG 3 cut(s) 101, 630, 645
MaeII ACGT 2 cut(s) 69, 851
MaeIII GTNAC 2 cut(s) 186, 512
MboII GAAGA 2 cut(s) 89, 377
MhlI GDGCHC 2 cut(s) 213, 351
MluCI AATT 2 cut(s) 323, 720
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 635
MnlI CCTC 6 cut(s) 110, 240, 384, 633, 735, 825
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 3 cut(s) 26, 342, 783
MslI CAYNNNNRTG 2 cut(s) 182, 705
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 89, 301, 819
MspR9I CCNGG 4 cut(s) 89, 302, 705, 819
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 2 cut(s) 44, 83
NciI CCSGG 3 cut(s) 89, 302, 819
NlaIII CATG 4 cut(s) 364, 465, 682, 751
NlaIV GGNNCC 1 cut(s) 299
NmuCI GTSAC 2 cut(s) 186, 512
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 1 cut(s) 751
OliI CACNNNNGTG 1 cut(s) 182
PciI ACATGT 1 cut(s) 747
PfeI GAWTC 4 cut(s) 134, 169, 481, 788
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 852
PpuMI RGGWCCY 1 cut(s) 621
PscI ACATGT 1 cut(s) 747
PshAI GACNNNNGTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 2 cut(s) 621, 716
PspPPI RGGWCCY 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 2 cut(s) 125, 850
RsaNI GTAC 2 cut(s) 124, 849
RseI CAYNNNNRTG 2 cut(s) 182, 705
SaqAI TTAA 3 cut(s) 26, 342, 783
Sau96I GGNCC 2 cut(s) 621, 716
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 4 cut(s) 89, 302, 705, 819
SduI GDGCHC 2 cut(s) 213, 351
SetI ASST 8 cut(s) 72, 186, 289, 445, 626, 762, 817, 854
SfaNI GCATC 4 cut(s) 445, 466, 574, 720
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 182, 705
Sse9I AATT 2 cut(s) 323, 720
SsiI CCGC 1 cut(s) 92
SspMI CTAG 3 cut(s) 101, 630, 645
StyD4I CCNGG 4 cut(s) 87, 300, 703, 817
TaaI ACNGT 3 cut(s) 669, 734, 848
TaiI ACGT 2 cut(s) 72, 854
TaqI TCGA 6 cut(s) 73, 132, 137, 232, 316, 474
TasI AATT 2 cut(s) 323, 720
TfiI GAWTC 4 cut(s) 134, 169, 481, 788
Tru1I TTAA 3 cut(s) 26, 342, 783
Tru9I TTAA 3 cut(s) 26, 342, 783
TscAI CASTG 5 cut(s) 60, 391, 517, 744, 851
TseFI GTSAC 2 cut(s) 186, 512
Tsp45I GTSAC 2 cut(s) 186, 512
TspDTI ATGAA 2 cut(s) 450, 752
TspRI CASTG 5 cut(s) 60, 391, 517, 744, 851
VpaK11BI GGWCC 1 cut(s) 621
XagI CCTNNNNNAGG 1 cut(s) 534
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 496
XspI CTAG 3 cut(s) 101, 630, 645
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.