Rh6CG187600

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014147
Physical Location & Seq
Forward (+)
30477146 .. 30477640
495 bp
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UTR
Exon/CDS
Intron
Rh6CG187600.1

Sequence Viewer

Length: 495 bp
ATGGAGGAAGGCTTCCCTAATGCCACTGGGAGGGAGCAATCGATAAAAGGGATGAGAACATCAGAGTTTTGCTTGCACCCAGCTGGGGACACTCCCACTTCATGCCGGCTTTTTGATGCCATTCAAAGTCTTTGTATACCTGTTATTGTCAGCGACAACATAGAGCTTCCTTTTGAAGGAATGATTGATTATTCAGAATTTTCAGTTTTTGTTGCAGTTAGTGATGCATTGAGACCAAACTGGCTTATGGGTCATCTTAAGAGCTTTTCAAAAGCGGAGAGGGATAGATTTCGTCAGAAAATGGCTCAGCTACAGCCTGTGTTTCAGTATGACAATGGCCATCCTGGAGCCATCGGGCCAGTTTCTCCTGATGGTGCAGTGAACCACATCTGGAAAAAGGTTTACCAAAAGCTGCCAATGATTAAGGAAGCAATCCTTCGTGAAAGGAGAAAACCTACTGGTGTATCAGTTCCACGCCGTTGTCATTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

164

Amino Acids

18.51

Weight (kDa)

8.64

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 9 - 83 7.6e-30 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34270
fragaria_vesca FvH4_2g12430
malus_domestica MD05G1038500.v1.1 MD10G1044300.v1.1
prunus_persica Prupe.8G050800_v2.0.a1
pyrus_communis pycom05g03140 pycom10g03090
rosa_chinensis RchiOBHm_Chr6g0272591
rosa_laevigata RLG00000013663
rosa_multiflora Rmu_sc0003080.1_g000005
rosa_roxburghii Rroxscaffold_7G00196090
rosa_rugosa Rorug06G0070100
rosa_samantha Rh6AG186500 Rh6BG189800 Rh6CG187600 Rh6DG179500
rosa_wichuraiana Rw6G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 3 cut(s) 30, 85, 176
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 125, 176, 270
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 5 cut(s) 83, 166, 264, 310, 412
AluI AGCT 5 cut(s) 83, 166, 264, 310, 412
Alw26I GTCTC 1 cut(s) 226
AoxI GGCC 2 cut(s) 337, 356
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BalI TGGCCA 1 cut(s) 339
BbvI GCAGC 1 cut(s) 399
BccI CCATC 3 cut(s) 348, 359, 365
BceAI ACGGC 1 cut(s) 462
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 413
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 414
Bme1390I CCNGG 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 345
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 106, 214
BmuI ACTGGG 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 226
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 85, 176
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 4 cut(s) 31, 245, 359, 463
BseBI CCWGG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 41
BseGI GGATG 2 cut(s) 57, 340
BseLI CCNNNNNNNGG 3 cut(s) 30, 85, 176
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 4 cut(s) 31, 245, 359, 463
BseXI GCAGC 1 cut(s) 399
BseYI CCCAGC 2 cut(s) 79, 83
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 2 cut(s) 339, 358
BshVI ATCGAT 1 cut(s) 41
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 30, 85, 176
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 2 cut(s) 339, 358
Bso31I GGTCTC 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 488
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 339, 358
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 488
BsrI ACTGG 4 cut(s) 31, 245, 359, 463
BssAI RCCGGY 1 cut(s) 105
BssNAI GTATAC 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 345
BstAFI CTTAAG 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 74, 107
BstDEI CTNAG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 57, 340
BstMAI GTCTC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 399
BstZ17I GTATAC 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 2 cut(s) 339, 358
BsuTUI ATCGAT 1 cut(s) 41
BtsCI GGATG 2 cut(s) 57, 340
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 24, 384
Cac8I GCNNGC 2 cut(s) 74, 107
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 356
ClaI ATCGAT 1 cut(s) 41
Csp6I GTAC 1 cut(s) 489
CviAII CATG 2 cut(s) 102, 492
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 2 cut(s) 105, 495
FaiI YATR 6 cut(s) 103, 137, 161, 248, 330, 493
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 101, 491
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 2 cut(s) 64, 327
Fsp4HI GCNGC 1 cut(s) 413
GluI GCNGC 1 cut(s) 413
GsaI CCCAGC 2 cut(s) 83, 87
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 2 cut(s) 339, 358
HapII CCGG 1 cut(s) 106
Hin1II CATG 2 cut(s) 105, 495
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 137, 382, 403
Hpy188I TCNGA 3 cut(s) 64, 196, 297
Hpy188III TCNNGA 3 cut(s) 368, 391, 440
Hpy8I GTNNAC 3 cut(s) 137, 382, 403
HpyAV CCTTC 2 cut(s) 170, 446
HpyCH4V TGCA 4 cut(s) 76, 215, 227, 377
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 2 cut(s) 105, 495
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 34, 347
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 2 cut(s) 106, 214
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 339
MnlI CCTC 2 cut(s) 24, 273
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 339
MseI TTAA 2 cut(s) 258, 423
Msp20I TGGCCA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
NaeI GCCGGC 1 cut(s) 107
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 2 cut(s) 105, 495
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 229
PdiI GCCGGC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 343
PspFI CCCAGC 2 cut(s) 79, 83
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 258, 423
SatI GCNGC 1 cut(s) 413
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 345
SetI ASST 8 cut(s) 85, 142, 168, 266, 312, 402, 414, 457
SfaNI GCATC 2 cut(s) 106, 214
SfcI CTRYAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 343
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 488
Tru1I TTAA 2 cut(s) 258, 423
Tru9I TTAA 2 cut(s) 258, 423
TscAI CASTG 2 cut(s) 31, 384
TseI GCWGC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 2 cut(s) 31, 384
Vha464I CTTAAG 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.