Prupe.8G050800_v2.0.a1

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014147
Physical Location & Seq
Reverse (-)
5522514 .. 5525254
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G050800.1

Sequence Viewer

Length: 1461 bp
ATGGCACTGAAGAGCACCGCTACAGCCACAGCTTCATCTTCATCCTCTTCACTGTGCTCTGTTCCTACTCTCTTCTTCGCCTTCACTCTCCTCTGCACTCTCTCTTTTTCTCTCTTCTTCCTCTTCAATCCTCTTTCTTCTCCTTCTTCCTCATCCTCGATTTACCGAAACGCCTTTCACTCTCCCCAAAATTCTATCCAAGTCTTCGTCGCAGACCTCCCCAGATCCCTCAACTATGGCCTCCTCGACAAGTACTGGGCTTCCGGGCCCGATTCCCGGTTGGGTAGCGGTGCGGACCACGAAATCCCGAAGACCCAATTGCCCAAAAGCCTTGAATTTCCGCCATATCCTGAGAATCCATTGATCAAACAATACAGTGCCGAGTACTGGATTTTGGGGGACCTGATGACCCCGCAGGCTCAGAGAACTGCGTCGTTTGCCCAGAGGGTTTTCAGTGCTGCCGAAGCAGAGGTCGTTTTCGTGCCCTTTTTTGCGACTTTGAGCGCTGAATTGCAGCTGGCTACGGCTAAAGGAGCGTTCAGGAAGAAGGCTGGGAATGGGGACTATGAGAGGCAGAGGCAAGTAGTTGACTTTGTGAAGAACACCGAGGCTTGGAAAAGATCAGGTGGAAGAGACCATGTGTTTGTGCTCACTGACCCAGTGGCAATGTGGCACGTTAGAGCAGAGATAGCCCCGGCAGTCCTCCTAGTTGTAGATTTTGGAGGGTGGTACAGGCTCGAATCCAAGTCATCGAATGGTAACTCGTCAGATGTGATTCAGCACGCACAAGTTTCACTGCTCAAAGATGTAATTGTGCCCTACACCCATCTACTTCCTAGATTGCAACTGACAGAAAACAAGAAGCGGCAGACTCTACTTTATTTCAAAGGAGCTAAACATAGACATCGGGGAGGCTTAGTTCGAGAAAAATTGTGGGACCTGTTGGTTAATGAACCGGATGTTATTATGGAAGAAGGATTCCCTAACGCTACTGGGAGGGAGCAGTCCATAAAAGGGATGAGAACATCAAAGTTTTGCTTGCACCCAGCTGGGGACACTCCCACTTCATGCCGGCTTTTTGATGCCATTCAAAGTCTTTGTATACCTGTTATTGTCAGTGACAACATAGAGCTTCCTTTTGAAGGGATTGTAGATTATTCAGAATTTTCAGTTTTTGTGGCAGTTGATGATGCATTGAAACCAAACTGGGTTGTGAGCCATCTTAGAACCTTTCCTAAAGAGCAAAGAGATAGATTTCGTCGGAAAATGGCTCAGTTTCAGCCCTTGTTTGAGTATGACAATGGTCATCCTGGTGGCATCGGGCCAATTCCACCAGACGGTGCAGTGAACCACGTGTGGAAAAAGGTTTACCAGAAGCTGCCCATGATTAAGGAAGCAATCATTCGTGAAAGGAGAAAACCTCCTGGTGTATCAGTTCCACCACGCTGTCACTGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

487

Amino Acids

54.45

Weight (kDa)

9.07

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34270
fragaria_vesca FvH4_2g12430
malus_domestica MD05G1038500.v1.1 MD10G1044300.v1.1
prunus_persica Prupe.8G050800_v2.0.a1
pyrus_communis pycom05g03140 pycom10g03090
rosa_chinensis RchiOBHm_Chr6g0272591
rosa_laevigata RLG00000013663
rosa_multiflora Rmu_sc0003080.1_g000005
rosa_roxburghii Rroxscaffold_7G00196090
rosa_rugosa Rorug06G0070100
rosa_samantha Rh6AG186500 Rh6BG189800 Rh6CG187600 Rh6DG179500
rosa_wichuraiana Rw6G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1102
AciI CCGC 6 cut(s) 18, 288, 293, 341, 413, 865
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 3 cut(s) 190, 335, 1163
AcuI CTGAAG 1 cut(s) 29
AcvI CACGTG 1 cut(s) 1354
AfaI GTAC 4 cut(s) 254, 386, 731, 1456
AfeI AGCGCT 1 cut(s) 505
AfiI CCNNNNNNNGG 7 cut(s) 276, 387, 612, 1014, 1051, 1142, 1337
AflIII ACRYGT 1 cut(s) 1353
AgsI TTSAA 6 cut(s) 127, 335, 886, 1091, 1142, 1198
AjnI CCWGG 2 cut(s) 1309, 1423
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
AluBI AGCT 6 cut(s) 32, 517, 893, 1049, 1132, 1378
AluI AGCT 6 cut(s) 32, 517, 893, 1049, 1132, 1378
Alw21I GWGCWC 3 cut(s) 17, 59, 651
Alw26I GTCTC 1 cut(s) 627
AlwI GGATC 1 cut(s) 219
AlwNI CAGNNNCTG 1 cut(s) 1378
Aor51HI AGCGCT 1 cut(s) 505
AoxI GGCC 3 cut(s) 238, 266, 1322
ApaI GGGCCC 1 cut(s) 270
ApeKI GCWGC 3 cut(s) 458, 514, 1378
ApoI RAATTY 3 cut(s) 190, 335, 1163
ArsI GACNNNNNNTTYG 4 cut(s) 456, 488, 626, 658
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 6 cut(s) 266, 267, 295, 400, 937, 1322
AsuC2I CCSGG 3 cut(s) 265, 277, 695
AvaII GGWCC 3 cut(s) 295, 400, 937
BaeGI GKGCMC 3 cut(s) 270, 486, 819
BanII GRGCYC 1 cut(s) 270
BbrPI CACGTG 1 cut(s) 1354
BbsI GAAGAC 2 cut(s) 196, 317
Bbv12I GWGCWC 3 cut(s) 17, 59, 651
BbvI GCAGC 3 cut(s) 445, 526, 1365
BccI CCATC 2 cut(s) 834, 1227
BceAI ACGGC 1 cut(s) 540
BciT130I CCWGG 2 cut(s) 1311, 1425
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 3 cut(s) 265, 277, 695
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 2 cut(s) 707, 837
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 507
BisI GCNGC 4 cut(s) 459, 515, 866, 1379
BlsI GCNGC 4 cut(s) 460, 516, 867, 1380
BmcAI AGTACT 2 cut(s) 254, 386
Bme1390I CCNGG 5 cut(s) 265, 277, 695, 1311, 1425
Bme18I GGWCC 3 cut(s) 295, 400, 937
BmgT120I GGNCC 6 cut(s) 266, 267, 295, 400, 937, 1322
BmiI GGNNCC 3 cut(s) 268, 401, 938
BmrFI CCNGG 5 cut(s) 265, 277, 695, 1311, 1425
BmrI ACTGGG 4 cut(s) 265, 653, 1002, 1216
BmsI GCATC 3 cut(s) 1072, 1180, 1326
BmuI ACTGGG 4 cut(s) 265, 653, 1002, 1216
BoxI GACNNNNGTC 1 cut(s) 1302
BpiI GAAGAC 2 cut(s) 196, 317
BplI GAGNNNNNCTC 2 cut(s) 1405, 1437
BpuMI CCSGG 3 cut(s) 265, 277, 695
BsaAI YACGTR 1 cut(s) 1354
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 606, 693
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 7 cut(s) 276, 387, 612, 1014, 1051, 1142, 1337
Bse118I RCCGGY 1 cut(s) 1071
Bse1I ACTGG 5 cut(s) 260, 392, 659, 997, 1211
Bse3DI GCAATG 1 cut(s) 672
BseBI CCWGG 2 cut(s) 1311, 1425
BseDI CCNNGG 2 cut(s) 606, 693
BseGI GGATG 5 cut(s) 41, 152, 964, 1023, 1306
BseLI CCNNNNNNNGG 7 cut(s) 276, 387, 612, 1014, 1051, 1142, 1337
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 3 cut(s) 342, 434, 1286
BseNI ACTGG 5 cut(s) 260, 392, 659, 997, 1211
BseRI GAGGAG 2 cut(s) 80, 233
BseSI GKGCMC 3 cut(s) 270, 486, 819
BseXI GCAGC 3 cut(s) 445, 526, 1365
BseYI CCCAGC 3 cut(s) 551, 1045, 1049
BsgI GTGCAG 2 cut(s) 79, 1362
BshFI GGCC 3 cut(s) 240, 268, 1324
BsiHKAI GWGCWC 3 cut(s) 17, 59, 651
BsiSI CCGG 5 cut(s) 264, 277, 695, 956, 1072
BslFI GGGAC 4 cut(s) 413, 575, 950, 1067
BslI CCNNNNNNNGG 7 cut(s) 276, 387, 612, 1014, 1051, 1142, 1337
BsmAI GTCTC 1 cut(s) 627
BsmFI GGGAC 4 cut(s) 413, 575, 950, 1067
BsnI GGCC 3 cut(s) 240, 268, 1324
Bso31I GGTCTC 1 cut(s) 627
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 6 cut(s) 17, 59, 270, 486, 651, 819
Bsp143I GATC 3 cut(s) 224, 363, 620
BspACI CCGC 6 cut(s) 18, 288, 293, 341, 413, 865
BspANI GGCC 3 cut(s) 240, 268, 1324
BspCNI CTCAG 3 cut(s) 343, 433, 1285
BspLI GGNNCC 3 cut(s) 268, 401, 938
BspPI GGATC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 1071
BsrI ACTGG 5 cut(s) 260, 392, 659, 997, 1211
BssAI RCCGGY 1 cut(s) 1071
BssECI CCNNGG 2 cut(s) 606, 693
BssMI GATC 3 cut(s) 224, 363, 620
BssNAI GTATAC 1 cut(s) 1103
Bst1107I GTATAC 1 cut(s) 1103
Bst2UI CCWGG 2 cut(s) 1311, 1425
Bst4CI ACNGT 4 cut(s) 54, 377, 1340, 1454
Bst6I CTCTTC 6 cut(s) 5, 52, 77, 119, 128, 625
BstBAI YACGTR 1 cut(s) 1354
BstC8I GCNNGC 5 cut(s) 417, 519, 783, 1040, 1073
BstDEI CTNAG 5 cut(s) 351, 420, 916, 1223, 1272
BstENI CCTNNNNNAGG 1 cut(s) 1140
BstF5I GGATG 5 cut(s) 41, 152, 964, 1023, 1306
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 3 cut(s) 227, 366, 623
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 3 cut(s) 224, 363, 620
BstMWI GCNNNNNNNGC 4 cut(s) 437, 464, 533, 689
BstNI CCWGG 2 cut(s) 1311, 1425
BstPAI GACNNNNGTC 1 cut(s) 1302
BstSCI CCNGG 5 cut(s) 263, 275, 693, 1309, 1423
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 3 cut(s) 270, 486, 819
BstV1I GCAGC 3 cut(s) 445, 526, 1365
BstV2I GAAGAC 2 cut(s) 196, 317
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 1103
BsuRI GGCC 3 cut(s) 240, 268, 1324
BtsCI GGATG 5 cut(s) 41, 152, 964, 1023, 1306
BtsI GCAGTG 2 cut(s) 794, 1350
Cac8I GCNNGC 5 cut(s) 417, 519, 783, 1040, 1073
CaiI CAGNNNCTG 1 cut(s) 1378
CfoI GCGC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 1071
Cfr13I GGNCC 6 cut(s) 266, 267, 295, 400, 937, 1322
CseI GACGC 1 cut(s) 420
Csp6I GTAC 4 cut(s) 253, 385, 730, 1455
CviAII CATG 3 cut(s) 638, 1068, 1384
CviQI GTAC 4 cut(s) 253, 385, 730, 1455
DdeI CTNAG 5 cut(s) 351, 420, 916, 1223, 1272
DpnI GATC 3 cut(s) 226, 365, 622
DpnII GATC 3 cut(s) 224, 363, 620
Eam1104I CTCTTC 6 cut(s) 5, 52, 77, 119, 128, 625
EarI CTCTTC 6 cut(s) 5, 52, 77, 119, 128, 625
EciI GGCGGA 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 627
Eco47I GGWCC 3 cut(s) 295, 400, 937
Eco47III AGCGCT 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 29
Eco72I CACGTG 1 cut(s) 1354
EcoNI CCTNNNNNAGG 1 cut(s) 1140
EcoO109I RGGNCCY 2 cut(s) 400, 937
EcoRII CCWGG 2 cut(s) 1309, 1423
EcoT22I ATGCAT 1 cut(s) 1195
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 3 cut(s) 641, 1071, 1387
FalI AAGNNNNNCTT 2 cut(s) 1022, 1054
FaqI GGGAC 4 cut(s) 413, 575, 950, 1067
FatI CATG 3 cut(s) 637, 1067, 1383
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 1102
Fnu4HI GCNGC 4 cut(s) 459, 515, 866, 1379
FokI GGATG 5 cut(s) 28, 139, 971, 1030, 1293
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 4 cut(s) 459, 515, 866, 1379
FspBI CTAG 2 cut(s) 707, 837
GlaI GCGC 1 cut(s) 505
GluI GCNGC 4 cut(s) 459, 515, 866, 1379
GsaI CCCAGC 3 cut(s) 555, 1049, 1053
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 3 cut(s) 240, 268, 1324
HapII CCGG 5 cut(s) 264, 277, 695, 956, 1072
HgaI GACGC 1 cut(s) 420
HhaI GCGC 1 cut(s) 506
Hin1II CATG 3 cut(s) 641, 1071, 1387
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 6 cut(s) 272, 355, 740, 775, 871, 978
HpaII CCGG 5 cut(s) 264, 277, 695, 956, 1072
Hpy166II GTNNAC 4 cut(s) 589, 1103, 1348, 1369
Hpy188I TCNGA 4 cut(s) 423, 769, 1162, 1263
Hpy188III TCNNGA 5 cut(s) 307, 350, 541, 923, 1406
Hpy8I GTNNAC 4 cut(s) 589, 1103, 1348, 1369
Hpy99I CGWCG 3 cut(s) 212, 436, 1263
HpyAV CCTTC 5 cut(s) 91, 153, 541, 968, 1136
HpyCH4III ACNGT 4 cut(s) 54, 377, 1340, 1454
HpyCH4IV ACGT 2 cut(s) 675, 1353
HpyCH4V TGCA 6 cut(s) 96, 514, 844, 1042, 1193, 1343
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 464, 533, 689
HpyF3I CTNAG 5 cut(s) 351, 420, 916, 1223, 1272
HpySE526I ACGT 2 cut(s) 675, 1353
Hsp92II CATG 3 cut(s) 641, 1071, 1387
HspAI GCGC 1 cut(s) 504
KroI GCCGGC 1 cut(s) 1071
KroNI GCCGGC 1 cut(s) 1073
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 3 cut(s) 224, 363, 620
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 3 cut(s) 533, 890, 1000
Lsp1109I GCAGC 3 cut(s) 445, 526, 1365
LweI GCATC 3 cut(s) 1072, 1180, 1326
MaeI CTAG 2 cut(s) 707, 837
MaeII ACGT 2 cut(s) 675, 1353
MaeIII GTNAC 3 cut(s) 758, 1118, 1448
MalI GATC 3 cut(s) 226, 365, 622
MboI GATC 3 cut(s) 224, 363, 620
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 6 cut(s) 17, 59, 270, 486, 651, 819
MluCI AATT 8 cut(s) 190, 317, 335, 509, 810, 929, 1163, 1326
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 1 cut(s) 1241
Mph1103I ATGCAT 1 cut(s) 1195
MroNI GCCGGC 1 cut(s) 1071
MseI TTAA 2 cut(s) 948, 1389
MslI CAYNNNNRTG 1 cut(s) 1311
MspA1I CMGCKG 2 cut(s) 517, 1049
MspI CCGG 5 cut(s) 264, 277, 695, 956, 1072
MspR9I CCNGG 5 cut(s) 265, 277, 695, 1311, 1425
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 2 cut(s) 1311, 1425
MwoI GCNNNNNNNGC 4 cut(s) 437, 464, 533, 689
NaeI GCCGGC 1 cut(s) 1073
NciI CCSGG 3 cut(s) 265, 277, 695
NdeII GATC 3 cut(s) 224, 363, 620
NgoMIV GCCGGC 1 cut(s) 1071
NlaIII CATG 3 cut(s) 641, 1071, 1387
NlaIV GGNNCC 3 cut(s) 268, 401, 938
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 1118, 1448
NsiI ATGCAT 1 cut(s) 1195
PciSI GCTCTTC 1 cut(s) 5
PdiI GCCGGC 1 cut(s) 1073
PfeI GAWTC 5 cut(s) 272, 355, 740, 775, 978
PkrI GCNGC 4 cut(s) 460, 516, 867, 1380
PleI GAGTC 1 cut(s) 865
PmaCI CACGTG 1 cut(s) 1354
PmlI CACGTG 1 cut(s) 1354
PpsI GAGTC 1 cut(s) 865
Ppu21I YACGTR 1 cut(s) 1354
PpuMI RGGWCCY 2 cut(s) 400, 937
PshAI GACNNNNGTC 1 cut(s) 1302
Psp5II RGGWCCY 2 cut(s) 400, 937
Psp6I CCWGG 2 cut(s) 1309, 1423
PspCI CACGTG 1 cut(s) 1354
PspFI CCCAGC 3 cut(s) 551, 1045, 1049
PspGI CCWGG 2 cut(s) 1309, 1423
PspN4I GGNNCC 3 cut(s) 268, 401, 938
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 6 cut(s) 266, 267, 295, 400, 937, 1322
PspPPI RGGWCCY 2 cut(s) 400, 937
PstNI CAGNNNCTG 1 cut(s) 1378
PsuI RGATCY 1 cut(s) 224
PvuII CAGCTG 2 cut(s) 517, 1049
RsaI GTAC 4 cut(s) 254, 386, 731, 1456
RsaNI GTAC 4 cut(s) 253, 385, 730, 1455
RseI CAYNNNNRTG 1 cut(s) 1311
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 2 cut(s) 948, 1389
SatI GCNGC 4 cut(s) 459, 515, 866, 1379
Sau3AI GATC 3 cut(s) 224, 363, 620
Sau96I GGNCC 6 cut(s) 266, 267, 295, 400, 937, 1322
ScaI AGTACT 2 cut(s) 254, 386
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 5 cut(s) 265, 277, 695, 1311, 1425
SduI GDGCHC 6 cut(s) 17, 59, 270, 486, 651, 819
SfaNI GCATC 3 cut(s) 1072, 1180, 1326
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 3 cut(s) 295, 400, 937
SmiMI CAYNNNNRTG 1 cut(s) 1311
Sse9I AATT 8 cut(s) 190, 317, 335, 509, 810, 929, 1163, 1326
SsiI CCGC 6 cut(s) 18, 288, 293, 341, 413, 865
SspMI CTAG 2 cut(s) 707, 837
StyD4I CCNGG 5 cut(s) 263, 275, 693, 1309, 1423
TaaI ACNGT 4 cut(s) 54, 377, 1340, 1454
TaiI ACGT 2 cut(s) 678, 1356
TaqI TCGA 5 cut(s) 158, 246, 738, 752, 922
TasI AATT 8 cut(s) 190, 317, 335, 509, 810, 929, 1163, 1326
TatI WGTACW 3 cut(s) 252, 384, 1454
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 272, 355, 740, 775, 978
Tru1I TTAA 2 cut(s) 948, 1389
Tru9I TTAA 2 cut(s) 948, 1389
TseFI GTSAC 2 cut(s) 1118, 1448
TseI GCWGC 3 cut(s) 458, 514, 1378
Tsp45I GTSAC 2 cut(s) 1118, 1448
TspDTI ATGAA 4 cut(s) 24, 30, 966, 1056
VpaK11BI GGWCC 3 cut(s) 295, 400, 937
XagI CCTNNNNNAGG 1 cut(s) 1140
XapI RAATTY 3 cut(s) 190, 335, 1163
XcmI CCANNNNNNNNNTGG 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 1102
XspI CTAG 2 cut(s) 707, 837
ZrmI AGTACT 2 cut(s) 254, 386
Zsp2I ATGCAT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.